| #
bfcb38ea
|
| 27-May-2019 |
Patrick Sanan <patrick.sanan@gmail.com> |
Man pages: remove .keywords: fields
This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be unif
Man pages: remove .keywords: fields
This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be uniformly used or maintained.
Thus, remove all .keywords: fields, and a following blank line, if present.
This is accomplished with GNU sed (gsed on OS X), with the following commands.
*Warning* that this type of command can corrupt a .git directory,
so be cautious in reusing or modifying these commands. They first look
for and delete matching lines with a following line consisting of only whitespace,
and then delete any remaining matching lines.
find src/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find src/ -type f -exec gsed -i '/keywords:/d' {} +
find include/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find include/ -type f -exec gsed -i '/keywords:/d' {} +
Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed
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| #
268263ee
|
| 18-May-2019 |
Hong Zhang <hongzhang@anl.gov> |
Merged in hongzh/improve-tstrajectory-folder (pull request #1673)
Generate unique folder names for TSTrajectory
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Emil Constantinescu <emcon
Merged in hongzh/improve-tstrajectory-folder (pull request #1673)
Generate unique folder names for TSTrajectory
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Emil Constantinescu <emconsta@mcs.anl.gov>
Approved-by: Stefano Zampini <stefano.zampini@gmail.com>
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| #
8a10d460
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| 13-May-2019 |
Hong Zhang <hongzhang@anl.gov> |
Generate unique folder names for TSTrajectory
- Added PetscMkdtemp()
- Removed -ts_trajectory_dirname in tests
- The changes are also applied to trajmemory.c
Funded-by:
Project: FASTMATH adjoint
Ti
Generate unique folder names for TSTrajectory
- Added PetscMkdtemp()
- Removed -ts_trajectory_dirname in tests
- The changes are also applied to trajmemory.c
Funded-by:
Project: FASTMATH adjoint
Time: 6.5 hours
Reported-by:
Thanks-to:
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|
| #
7e33834a
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| 10-May-2019 |
Hong Zhang <hongzhang@anl.gov> |
Merged in hongzh/ts-adjoint2 (pull request #1562)
Second-order adjoint ODE solvers
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
|
| #
9ffb3502
|
| 30-Apr-2019 |
Hong Zhang <hongzhang@anl.gov> |
TSAdjoint: set TSTrajectory not to use TSHistory
Funded-by:
Project: FASTMath adjoint
Time: 0.5 hours
Reported-by:
Thanks-to:
|
| #
881c1a9b
|
| 22-Apr-2019 |
Hong Zhang <hongzhang@anl.gov> |
TSAdjoint: add check for checkpointing settings
- Error out when -ts_trajectory_type basic and -ts_trajectory_solution_only are used together
- The basic type simply saves everything to disk and doe
TSAdjoint: add check for checkpointing settings
- Error out when -ts_trajectory_type basic and -ts_trajectory_solution_only are used together
- The basic type simply saves everything to disk and does not recompute stage values needed by TSAdjoint
- Ugly workaround. Erroring out from TSTrajectory could be better
Funded-by:
Project: FASTMath adjoint
Time: 2.0 hours
Reported-by:
Thanks-to:
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|
| #
ac1a7491
|
| 22-Apr-2019 |
Hong Zhang <hongzhang@anl.gov> |
Fix TSTrajectory problems caused by rebasing to master
This fix is related to the Commit f3334a0
- Add an option to disable the usage of TSHistory
Funded-by:
Project: FASTMath adjoint
Time: 5.0 ho
Fix TSTrajectory problems caused by rebasing to master
This fix is related to the Commit f3334a0
- Add an option to disable the usage of TSHistory
Funded-by:
Project: FASTMath adjoint
Time: 5.0 hours
Reported-by:
Thanks-to:
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|
| #
8000f006
|
| 15-Mar-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
|
| #
553225e2
|
| 14-Mar-2019 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/jczhang/vecscat-in-sf' [PR #1396]
|
| #
8860a134
|
| 12-Mar-2019 |
Junchao Zhang <jczhang@mcs.anl.gov> |
Use new vector read-lock function names
The new one are VecLockReadPush, VecLockReadPop, VecSetErrorIfLocked
|
| #
b0f52d29
|
| 28-Jan-2019 |
Joseph Pusztay <josephpusztay@Josephs-MacBook-Pro.local> |
Merge branch 'master' into jpusztay/feature-swarm-symplectic-example
|
| #
a1a5ab92
|
| 28-Jan-2019 |
Joseph Pusztay <josephpusztay@Josephs-MacBook-Pro.local> |
Merge branch 'master' into jpusztay/feature-swarm-symplectic-example
|
| #
940dfb0a
|
| 28-Jan-2019 |
Joseph Pusztay <josephpu@buffalo.edu> |
Merged petsc/petsc into master
|
| #
30faf514
|
| 27-Jan-2019 |
m_diehl <m.diehl@mpie.de> |
Merged petsc/petsc into master
|
| #
ddad275a
|
| 21-Jan-2019 |
Patrick Farrell <patrick@pefarrell.org> |
Merge branch 'master' into knepley/feature-snes-patch
|
| #
c9141704
|
| 27-Dec-2018 |
Pierre Jolivet <pierre.jolivet@enseeiht.fr> |
Merged petsc/petsc into master
|
| #
66b342c2
|
| 26-Dec-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
|
| #
4b14c85e
|
| 26-Dec-2018 |
Karl Rupp <me@karlrupp.net> |
Merge branch 'stefano_zampini/fix-tsevent' [PR #1281]
* stefano_zampini/fix-tsevent:
The main contribution of this PR is this bugfix
https://bitbucket.org/petsc/petsc/commits/ad508104d570adaf8bb073
Merge branch 'stefano_zampini/fix-tsevent' [PR #1281]
* stefano_zampini/fix-tsevent:
The main contribution of this PR is this bugfix
https://bitbucket.org/petsc/petsc/commits/ad508104d570adaf8bb073d40bdaa5b6829df64e?at=stefano_zampini/fix-tsevent
The other commits serve the purpose of testing the code.
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|
| #
2c2595ff
|
| 20-Dec-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/fix-plex-partition-parallel
* master: (414 commits)
very small updates to users manual
syntax is define(XXX) in examples tests not defined(XXX)
Increase patc
Merge branch 'master' into knepley/fix-plex-partition-parallel
* master: (414 commits)
very small updates to users manual
syntax is define(XXX) in examples tests not defined(XXX)
Increase patchlevel to 3.10.3
petsc4py: updat to latest maint snapshot with SNESTEST updates
Fix link for CUDA example in PETSc from GPUs.html page Minor fixes to installation instructions
Mat: Fixed types in Pardiso interface
Converted example comment to latex
This example crashes (for unknown reasons, probably related to the handling of extended derived types passed as arguments) with the PGI Fortran compiler
Remove outdated requires: from top of several examples
remove outdated test requires: command from top of source file
Fix the documentation for -ksp_gmres_cgs_refinement_type
Commit f20c2d659b168217cb455989f28afe052d71a64c broke lex.py so the users manual was no longer being built. There reverted the changes to lex.py
Plex: Add PetscPartitioner to fort list Suggested-by: Jiaoyan Li <Jiaoyan.Li@inl.gov>
Doc: Fix spelling Suggested-by: Manuel Colera Rico <m.colera@upm.es>
Mat ex88: check in double or quad precision only
Fix error with PetscComplex when PETSc is compiled with C and used in C++
configure: fix typo endwith -> endswith
Sys ex23: Migrated to ts_max_time in yaml file as well.
AO ex5: Fixed missing CHKERRQ();
Mat test ex88: add tests for MatMultAdd and MatMultTranposeAdd
...
Conflicts:
src/dm/impls/plex/examples/tests/ex12.c
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|
| #
a17281ae
|
| 17-Dec-2018 |
Stefano Zampini <stefano.zampini@gmail.com> |
TSTrajectorySetDirname : don't error if the string is the same
|
| #
34d8b122
|
| 09-Dec-2018 |
Patrick Farrell <patrick@pefarrell.org> |
Merge branch 'master' into knepley/feature-snes-patch
Not sure if this has done the right thing because there are no tests
yet. Also, the fortran stubs break (it doesn't know what to do with
SNESCo
Merge branch 'master' into knepley/feature-snes-patch
Not sure if this has done the right thing because there are no tests
yet. Also, the fortran stubs break (it doesn't know what to do with
SNESCompositeType), and I don't know how to fix it.
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|
| #
f35fe2a5
|
| 06-Dec-2018 |
Joseph Pusztay <josephpu@buffalo.edu> |
Merged petsc/petsc into master
|
| #
83c10b7e
|
| 04-Dec-2018 |
Pierre Jolivet <pierre.jolivet@enseeiht.fr> |
Merged petsc/petsc into master
|
| #
11973451
|
| 02-Dec-2018 |
Karl Rupp <me@karlrupp.net> |
Merge branch 'stefano_zampini/cherrypick-from-continuous-adjoint' [PR #1250]
* stefano_zampini/cherrypick-from-continuous-adjoint:
Few improvements from the continuous adjoint branch
This branch ext
Merge branch 'stefano_zampini/cherrypick-from-continuous-adjoint' [PR #1250]
* stefano_zampini/cherrypick-from-continuous-adjoint:
Few improvements from the continuous adjoint branch
This branch extracts few things that are in the continuous adjoint branch that should go into PETSc
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|
| #
fe8322ad
|
| 28-Nov-2018 |
Stefano Zampini <stefano.zampini@gmail.com> |
TSTrajectory: Few improvements to the interface
Added TSTrajectoryGet{UpdatedHistory|}Vecs() to get (possibly interpolating) data at specific time
Update output for TSTrajectoryMonitor
|