// Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. // // SPDX-License-Identifier: BSD-2-Clause // // This file is part of CEED: http://github.com/ceed /// @file /// Command line option processing for Navier-Stokes example using PETSc #include #include #include "../navierstokes.h" // Register problems to be available on the command line PetscErrorCode RegisterProblems_NS(AppCtx app_ctx) { app_ctx->problems = NULL; PetscFunctionBeginUser; PetscCall(PetscFunctionListAdd(&app_ctx->problems, "density_current", NS_DENSITY_CURRENT)); PetscCall(PetscFunctionListAdd(&app_ctx->problems, "euler_vortex", NS_EULER_VORTEX)); PetscCall(PetscFunctionListAdd(&app_ctx->problems, "shocktube", NS_SHOCKTUBE)); PetscCall(PetscFunctionListAdd(&app_ctx->problems, "advection", NS_ADVECTION)); PetscCall(PetscFunctionListAdd(&app_ctx->problems, "advection2d", NS_ADVECTION2D)); PetscCall(PetscFunctionListAdd(&app_ctx->problems, "blasius", NS_BLASIUS)); PetscCall(PetscFunctionListAdd(&app_ctx->problems, "channel", NS_CHANNEL)); PetscCall(PetscFunctionListAdd(&app_ctx->problems, "gaussian_wave", NS_GAUSSIAN_WAVE)); PetscCall(PetscFunctionListAdd(&app_ctx->problems, "newtonian", NS_NEWTONIAN_IG)); PetscFunctionReturn(PETSC_SUCCESS); } // Process general command line options PetscErrorCode ProcessCommandLineOptions(MPI_Comm comm, AppCtx app_ctx, SimpleBC bc) { PetscBool ceed_flag = PETSC_FALSE; PetscBool problem_flag = PETSC_FALSE; PetscBool option_set = PETSC_FALSE; PetscFunctionBeginUser; PetscOptionsBegin(comm, NULL, "Navier-Stokes in PETSc with libCEED", NULL); PetscCall(PetscOptionsString("-ceed", "CEED resource specifier", NULL, app_ctx->ceed_resource, app_ctx->ceed_resource, sizeof(app_ctx->ceed_resource), &ceed_flag)); app_ctx->test_type = TESTTYPE_NONE; PetscCall(PetscOptionsEnum("-test_type", "Type of test to run", NULL, TestTypes, (PetscEnum)(app_ctx->test_type), (PetscEnum *)&app_ctx->test_type, NULL)); app_ctx->test_tol = 1E-11; PetscCall(PetscOptionsScalar("-compare_final_state_atol", "Test absolute tolerance", NULL, app_ctx->test_tol, &app_ctx->test_tol, NULL)); PetscCall(PetscOptionsString("-compare_final_state_filename", "Test filename", NULL, app_ctx->test_file_path, app_ctx->test_file_path, sizeof(app_ctx->test_file_path), NULL)); PetscCall(PetscOptionsFList("-problem", "Problem to solve", NULL, app_ctx->problems, app_ctx->problem_name, app_ctx->problem_name, sizeof(app_ctx->problem_name), &problem_flag)); app_ctx->viz_refine = 0; PetscCall(PetscOptionsInt("-viz_refine", "Regular refinement levels for visualization", NULL, app_ctx->viz_refine, &app_ctx->viz_refine, NULL)); app_ctx->checkpoint_interval = 10; app_ctx->checkpoint_vtk = PETSC_FALSE; PetscCall(PetscOptionsDeprecated("-output_freq", "-checkpoint_interval", "libCEED 0.11.1", "Use -checkpoint_vtk true to include VTK output")); PetscCall(PetscOptionsInt("-output_freq", "Frequency of output, in number of steps", NULL, app_ctx->checkpoint_interval, &app_ctx->checkpoint_interval, &option_set)); if (option_set) app_ctx->checkpoint_vtk = PETSC_TRUE; PetscCall(PetscOptionsInt("-checkpoint_interval", "Frequency of output, in number of steps", NULL, app_ctx->checkpoint_interval, &app_ctx->checkpoint_interval, NULL)); PetscCall(PetscOptionsBool("-checkpoint_vtk", "Include VTK (*.vtu) output at each binary checkpoint", NULL, app_ctx->checkpoint_vtk, &app_ctx->checkpoint_vtk, NULL)); PetscCall(PetscOptionsBool("-output_add_stepnum2bin", "Add step number to the binary outputs", NULL, app_ctx->add_stepnum2bin, &app_ctx->add_stepnum2bin, NULL)); PetscCall(PetscStrncpy(app_ctx->output_dir, ".", 2)); PetscCall(PetscOptionsString("-output_dir", "Output directory", NULL, app_ctx->output_dir, app_ctx->output_dir, sizeof(app_ctx->output_dir), NULL)); app_ctx->cont_steps = 0; PetscCall(PetscOptionsInt("-continue", "Continue from previous solution", NULL, app_ctx->cont_steps, &app_ctx->cont_steps, NULL)); PetscCall(PetscStrcpy(app_ctx->cont_file, "[output_dir]/ns-solution.bin")); PetscCall(PetscOptionsString("-continue_filename", "Filename to get initial condition from", NULL, app_ctx->cont_file, app_ctx->cont_file, sizeof(app_ctx->cont_file), &option_set)); if (!option_set) PetscCall(PetscSNPrintf(app_ctx->cont_file, sizeof app_ctx->cont_file, "%s/ns-solution.bin", app_ctx->output_dir)); if (option_set && app_ctx->cont_steps == 0) app_ctx->cont_steps = -1; // Read time from file PetscCall(PetscStrcpy(app_ctx->cont_time_file, "[output_dir]/ns-time.bin")); PetscCall(PetscOptionsString("-continue_time_filename", "Filename to get initial condition time from", NULL, app_ctx->cont_time_file, app_ctx->cont_time_file, sizeof(app_ctx->cont_time_file), &option_set)); if (!option_set) PetscCall(PetscSNPrintf(app_ctx->cont_time_file, sizeof app_ctx->cont_time_file, "%s/ns-time.bin", app_ctx->output_dir)); app_ctx->degree = 1; PetscCall(PetscOptionsInt("-degree", "Polynomial degree of finite elements", NULL, app_ctx->degree, &app_ctx->degree, NULL)); app_ctx->q_extra = 0; PetscCall(PetscOptionsInt("-q_extra", "Number of extra quadrature points", NULL, app_ctx->q_extra, &app_ctx->q_extra, NULL)); { PetscBool option_set; char amat_type[256] = ""; PetscCall(PetscOptionsFList("-amat_type", "Set the type of Amat distinct from Pmat (-dm_mat_type)", NULL, MatList, amat_type, amat_type, sizeof(amat_type), &option_set)); if (option_set) PetscCall(PetscStrallocpy(amat_type, (char **)&app_ctx->amat_type)); } PetscCall(PetscOptionsBool("-pmat_pbdiagonal", "Assemble only point-block diagonal for Pmat", NULL, app_ctx->pmat_pbdiagonal, &app_ctx->pmat_pbdiagonal, NULL)); // Provide default ceed resource if not specified if (!ceed_flag) { const char *ceed_resource = "/cpu/self"; strncpy(app_ctx->ceed_resource, ceed_resource, 10); } // If we request a GPU, make sure PETSc has initialized its device (which is // MPI-aware in case multiple devices are available) before CeedInit so that // PETSc and libCEED agree about which device to use. if (strncmp(app_ctx->ceed_resource, "/gpu", 4) == 0) PetscCall(PetscDeviceInitialize(PETSC_DEVICE_DEFAULT())); // Provide default problem if not specified if (!problem_flag) { const char *problem_name = "density_current"; strncpy(app_ctx->problem_name, problem_name, 16); } // Wall Boundary Conditions bc->num_wall = 16; PetscBool flg; PetscCall(PetscOptionsIntArray("-bc_wall", "Face IDs to apply wall BC", NULL, bc->walls, &bc->num_wall, NULL)); bc->num_comps = 5; PetscCall(PetscOptionsIntArray("-wall_comps", "An array of constrained component numbers", NULL, bc->wall_comps, &bc->num_comps, &flg)); // Slip Boundary Conditions for (PetscInt j = 0; j < 3; j++) { bc->num_slip[j] = 16; PetscBool flg; const char *flags[3] = {"-bc_slip_x", "-bc_slip_y", "-bc_slip_z"}; PetscCall(PetscOptionsIntArray(flags[j], "Face IDs to apply slip BC", NULL, bc->slips[j], &bc->num_slip[j], &flg)); if (flg) bc->user_bc = PETSC_TRUE; } // Error if wall and slip BCs are set on the same face if (bc->user_bc) { for (PetscInt c = 0; c < 3; c++) { for (PetscInt s = 0; s < bc->num_slip[c]; s++) { for (PetscInt w = 0; w < bc->num_wall; w++) { PetscCheck(bc->slips[c][s] != bc->walls[w], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Boundary condition already set on face %" PetscInt_FMT "!\n", bc->walls[w]); } } } } app_ctx->wall_forces.num_wall = bc->num_wall; PetscMalloc1(bc->num_wall, &app_ctx->wall_forces.walls); PetscCall(PetscArraycpy(app_ctx->wall_forces.walls, bc->walls, bc->num_wall)); // Inflow BCs bc->num_inflow = 16; PetscCall(PetscOptionsIntArray("-bc_inflow", "Face IDs to apply inflow BC", NULL, bc->inflows, &bc->num_inflow, NULL)); // Outflow BCs bc->num_outflow = 16; PetscCall(PetscOptionsIntArray("-bc_outflow", "Face IDs to apply outflow BC", NULL, bc->outflows, &bc->num_outflow, NULL)); // Freestream BCs bc->num_freestream = 16; PetscCall(PetscOptionsIntArray("-bc_freestream", "Face IDs to apply freestream BC", NULL, bc->freestreams, &bc->num_freestream, NULL)); // Statistics Options app_ctx->turb_spanstats_collect_interval = 1; PetscCall(PetscOptionsInt("-ts_monitor_turbulence_spanstats_collect_interval", "Number of timesteps between statistics collection", NULL, app_ctx->turb_spanstats_collect_interval, &app_ctx->turb_spanstats_collect_interval, NULL)); app_ctx->turb_spanstats_viewer_interval = -1; PetscCall(PetscOptionsInt("-ts_monitor_turbulence_spanstats_viewer_interval", "Number of timesteps between statistics viewer writing", NULL, app_ctx->turb_spanstats_viewer_interval, &app_ctx->turb_spanstats_viewer_interval, NULL)); PetscCall(PetscOptionsViewer("-ts_monitor_turbulence_spanstats_viewer", "Viewer for the statistics", NULL, &app_ctx->turb_spanstats_viewer, &app_ctx->turb_spanstats_viewer_format, &app_ctx->turb_spanstats_enable)); PetscCall(PetscOptionsViewer("-ts_monitor_wall_force", "Viewer for force on each (no-slip) wall", NULL, &app_ctx->wall_forces.viewer, &app_ctx->wall_forces.viewer_format, NULL)); // SGS Model Options app_ctx->sgs_model_type = SGS_MODEL_NONE; PetscCall(PetscOptionsEnum("-sgs_model_type", "Subgrid Stress Model type", NULL, SGSModelTypes, (PetscEnum)app_ctx->sgs_model_type, (PetscEnum *)&app_ctx->sgs_model_type, NULL)); PetscCall(PetscOptionsBool("-diff_filter_monitor", "Enable differential filtering TSMonitor", NULL, app_ctx->diff_filter_monitor, &app_ctx->diff_filter_monitor, NULL)); PetscOptionsEnd(); PetscFunctionReturn(PETSC_SUCCESS); }