#if !defined(__PETSCMOAB_H) #define __PETSCMOAB_H #include /*I "petscvec.h" I*/ #include /*I "petscmat.h" I*/ #include /*I "petscdm.h" I*/ #include #include /*I "moab/Core.hpp" I*/ #include /*I "moab/ParallelComm.hpp" I*/ /* The MBERR macro is used to save typing. It checks a MOAB error code * (rval) and calls SETERRQ if not MB_SUCCESS. A message (msg) can * also be passed in. */ #define MBERR(msg,rval) do{if(rval != moab::MB_SUCCESS) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s",(PetscErrorCode)rval,msg);} while(0) #define MBERRNM(rval) do{if(rval != moab::MB_SUCCESS) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i)",rval);} while(0) #define MBERRV(mbif,rval) do{if(rval != moab::MB_SUCCESS) { std::string emsg; mbif->get_last_error(emsg); SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s",(PetscErrorCode)rval,emsg.c_str());} } while(0) #define MBERRVM(mbif,msg,rval) do{if(rval != moab::MB_SUCCESS) { std::string emsg; mbif->get_last_error(emsg); SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s :: %s",(PetscErrorCode)rval,msg,emsg.c_str());} } while(0) /* define enums for options to read and write MOAB files in parallel */ typedef enum {READ_PART,READ_DELETE,BCAST_DELETE} MoabReadMode; static const char *const MoabReadModes[] = {"READ_PART","READ_DELETE","BCAST_DELETE","MoabReadMode","",0}; typedef enum {WRITE_PART,FORMAT} MoabWriteMode; static const char *const MoabWriteModes[] = {"WRITE_PART","FORMAT","MoabWriteMode","",0}; PETSC_EXTERN PetscErrorCode DMMoabCreate(MPI_Comm comm, DM *moab); PETSC_EXTERN PetscErrorCode DMMoabCreateMoab(MPI_Comm comm, moab::Interface *mbiface, moab::ParallelComm *pcomm, moab::Tag *ltog_tag, moab::Range *range, DM *moab); PETSC_EXTERN PetscErrorCode DMMoabOutput(DM,const char*,const char*); PETSC_EXTERN PetscErrorCode DMMoabSetParallelComm(DM dm,moab::ParallelComm *pcomm); PETSC_EXTERN PetscErrorCode DMMoabGetParallelComm(DM dm,moab::ParallelComm **pcomm); PETSC_EXTERN PetscErrorCode DMMoabSetInterface(DM dm,moab::Interface *iface); PETSC_EXTERN PetscErrorCode DMMoabGetInterface(DM dm,moab::Interface **iface); PETSC_EXTERN PetscErrorCode DMMoabSetLocalVertices(DM dm,moab::Range *range); PETSC_EXTERN PetscErrorCode DMMoabGetAllVertices(DM dm,moab::Range *local); PETSC_EXTERN PetscErrorCode DMMoabGetLocalVertices(DM dm,const moab::Range **owned,const moab::Range **ghost); PETSC_EXTERN PetscErrorCode DMMoabSetLocalElements(DM dm,moab::Range *range); PETSC_EXTERN PetscErrorCode DMMoabGetLocalElements(DM dm,const moab::Range **range); PETSC_EXTERN PetscErrorCode DMMoabSetLocalToGlobalTag(DM dm,moab::Tag ltogtag); PETSC_EXTERN PetscErrorCode DMMoabGetLocalToGlobalTag(DM dm,moab::Tag *ltog_tag); PETSC_EXTERN PetscErrorCode DMMoabSetBlockSize(DM dm,PetscInt bs); PETSC_EXTERN PetscErrorCode DMMoabGetBlockSize(DM dm,PetscInt *bs); PETSC_EXTERN PetscErrorCode DMMoabGetDimension(DM dm,PetscInt *dim); PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryEntities(DM dm,moab::Range *bdvtx,moab::Range* bdfaces,moab::Range* bdelems); PETSC_EXTERN PetscErrorCode DMMoabGetMaterialBlock(DM dm,const moab::EntityHandle ehandle, PetscInt *mat); PETSC_EXTERN PetscErrorCode DMMoabGetSize(DM dm,PetscInt*,PetscInt*); PETSC_EXTERN PetscErrorCode DMMoabGetLocalSize(DM dm,PetscInt*,PetscInt*,PetscInt*,PetscInt*); PETSC_EXTERN PetscErrorCode DMMoabGetOffset(DM dm,PetscInt*); PETSC_EXTERN PetscErrorCode DMMoabVecGetArrayRead(DM,Vec,void*); PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArrayRead(DM,Vec,void*); PETSC_EXTERN PetscErrorCode DMMoabVecGetArray(DM,Vec,void*); PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArray(DM,Vec,void*); PETSC_EXTERN PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag,const moab::Range *range,PetscBool serial, PetscBool destroy_tag,Vec *X); PETSC_EXTERN PetscErrorCode DMMoabGetVecTag(Vec vec,moab::Tag *tag); PETSC_EXTERN PetscErrorCode DMMoabGetVecRange(Vec vec,moab::Range *range); PETSC_EXTERN PetscErrorCode DMMoabSetFieldVector(DM, PetscInt, Vec); PETSC_EXTERN PetscErrorCode DMMoabSetGlobalFieldVector(DM, Vec); PETSC_EXTERN PetscErrorCode DMMoabGetFieldName(DM dm, PetscInt field, const char **fieldName); PETSC_EXTERN PetscErrorCode DMMoabSetFieldName(DM dm, PetscInt field, const char *fieldName); PETSC_EXTERN PetscErrorCode DMMoabSetFieldNames(DM dm,PetscInt nfields,const char* fields[]); PETSC_EXTERN PetscErrorCode DMMoabGetFieldDof(DM dm,moab::EntityHandle point, PetscInt field,PetscInt* dof); PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofs(DM dm,PetscInt npoints,const moab::EntityHandle* points, PetscInt field,PetscInt* dof); PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofsLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points, PetscInt field,PetscInt* dof); PETSC_EXTERN PetscErrorCode DMMoabGetDofs(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof); PETSC_EXTERN PetscErrorCode DMMoabGetDofsLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof); PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlocked(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof); PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlockedLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof); PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlocked(DM dm,PetscInt** dof); PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlockedLocal(DM dm,PetscInt** dof); /* discretization and assembly specific DMMoab interface functions */ PETSC_EXTERN PetscErrorCode DMMoabGetElementConnectivity(DM dm,moab::EntityHandle ehandle,PetscInt* nconn,const moab::EntityHandle **conn); PETSC_EXTERN PetscErrorCode DMMoabGetVertexConnectivity(DM dm,moab::EntityHandle ehandle,PetscInt* nconn, moab::EntityHandle **conn); PETSC_EXTERN PetscErrorCode DMMoabRestoreVertexConnectivity(DM dm,moab::EntityHandle ehandle,PetscInt* nconn, moab::EntityHandle **conn); PETSC_EXTERN PetscErrorCode DMMoabGetVertexCoordinates(DM dm,PetscInt nconn,const moab::EntityHandle *conn,PetscReal *vpos); PETSC_EXTERN PetscErrorCode DMMoabIsEntityOnBoundary(DM dm,const moab::EntityHandle ent,PetscBool* ent_on_boundary); PETSC_EXTERN PetscErrorCode DMMoabCheckBoundaryVertices(DM dm,PetscInt nconn,const moab::EntityHandle *cnt,PetscBool* isbdvtx); PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryMarkers(DM dm,const moab::Range **bdvtx,const moab::Range** bdelems,const moab::Range** bdfaces); /* DM utility creation interface */ PETSC_EXTERN PetscErrorCode DMMoabCreateBoxMesh(MPI_Comm,PetscInt,PetscBool,const PetscReal*,PetscInt,PetscInt,DM*); PETSC_EXTERN PetscErrorCode DMMoabLoadFromFile(MPI_Comm,PetscInt,const char*,const char*,DM*); #endif