/* A star forest (SF) describes a communication pattern */ #if !defined(__PETSCSF_H) #define __PETSCSF_H #include PETSC_EXTERN PetscClassId PETSCSF_CLASSID; /*S PetscSF - PETSc object for communication using star forests Level: intermediate Concepts: star forest .seealso: PetscSFCreate() S*/ typedef struct _p_PetscSF* PetscSF; /*S PetscSFNode - specifier of owner and index Level: beginner Concepts: indexing, stride, distribution .seealso: PetscSFSetGraph() S*/ typedef struct { PetscInt rank; /* Rank of owner */ PetscInt index; /* Index of node on rank */ } PetscSFNode; /*E PetscSFSynchronizationType - Type of synchronization for PetscSF $ PETSCSF_SYNCHRONIZATION_FENCE - simplest model, synchronizing across communicator $ PETSCSF_SYNCHRONIZATION_LOCK - passive model, less synchronous, requires less setup than PETSCSF_SYNCHRONIZATION_ACTIVE, but may require more handshakes $ PETSCSF_SYNCHRONIZATION_ACTIVE - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_SYNCHRONIZATION_LOCK) Level: beginner .seealso: PetscSFSetSynchronizationType() E*/ typedef enum {PETSCSF_SYNCHRONIZATION_FENCE,PETSCSF_SYNCHRONIZATION_LOCK,PETSCSF_SYNCHRONIZATION_ACTIVE} PetscSFSynchronizationType; PETSC_EXTERN const char *const PetscSFSynchronizationTypes[]; #if !defined(PETSC_HAVE_MPI_WIN_CREATE) /* The intent here is to be able to compile even without a complete MPI. */ typedef struct MPI_Win_MISSING *MPI_Win; #endif PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(const char*); PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void); PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF*); PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF*); PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF,PetscViewer); PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF); PETSC_EXTERN PetscErrorCode PetscSFSetSynchronizationType(PetscSF,PetscSFSynchronizationType); PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF,PetscBool); PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF,PetscInt,PetscInt,const PetscInt*,PetscCopyMode,const PetscSFNode*,PetscCopyMode); PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote); PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF,PetscInt nroots,const PetscInt *selected,PetscSF *newsf); PETSC_EXTERN PetscErrorCode PetscSFCreateArray(PetscSF,MPI_Datatype,void*,void*); PETSC_EXTERN PetscErrorCode PetscSFDestroyArray(PetscSF,MPI_Datatype,void*,void*); PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF); PETSC_EXTERN PetscErrorCode PetscSFGetRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscMPIInt**,const PetscMPIInt**); PETSC_EXTERN PetscErrorCode PetscSFGetDataTypes(PetscSF,MPI_Datatype,const MPI_Datatype**,const MPI_Datatype**); PETSC_EXTERN PetscErrorCode PetscSFGetWindow(PetscSF,MPI_Datatype,void*,PetscBool,PetscMPIInt,PetscMPIInt,PetscMPIInt,MPI_Win*); PETSC_EXTERN PetscErrorCode PetscSFFindWindow(PetscSF,MPI_Datatype,const void*,MPI_Win*); PETSC_EXTERN PetscErrorCode PetscSFRestoreWindow(PetscSF,MPI_Datatype,const void*,PetscBool,PetscMPIInt,MPI_Win*); PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF,MPI_Group*,MPI_Group*); PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF,PetscSF*); PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF,PetscSF*); /* broadcasts rootdata to leafdata */ PETSC_EXTERN PetscErrorCode PetscSFBcastBegin(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata); PETSC_EXTERN PetscErrorCode PetscSFBcastEnd(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata); /* Reduce leafdata into rootdata using provided operation */ PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op); PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op); /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */ PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op); PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op); /* Compute the degree of every root vertex (number of leaves in its star) */ PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF,const PetscInt **degree); PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF,const PetscInt **degree); /* Concatenate data from all leaves into roots */ PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata); PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata); /* Distribute distinct values to each leaf from roots */ PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata); PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata); #endif