/* A star forest (SF) describes a communication pattern */ #if !defined(__PETSCSF_H) #define __PETSCSF_H #include PETSC_EXTERN PetscClassId PETSCSF_CLASSID; /*S PetscSF - PETSc object for communication using star forests Level: intermediate Concepts: star forest .seealso: PetscSFCreate() S*/ typedef struct _p_PetscSF* PetscSF; /*J PetscSFType - String with the name of a PetscSF method or the creation function with an optional dynamic library name, for example http://www.mcs.anl.gov/petsc/lib.so:mysfcreate() Level: beginner .seealso: PetscSFSetType(), PetscSF J*/ typedef const char *PetscSFType; #define PETSCSFWINDOW "window" #define PETSCSFBASIC "basic" /*S PetscSFNode - specifier of owner and index Level: beginner Concepts: indexing, stride, distribution .seealso: PetscSFSetGraph() S*/ typedef struct { PetscInt rank; /* Rank of owner */ PetscInt index; /* Index of node on rank */ } PetscSFNode; /*E PetscSFWindowSyncType - Type of synchronization for PETSCSFWINDOW $ PETSCSF_WINDOW_SYNC_FENCE - simplest model, synchronizing across communicator $ PETSCSF_WINDOW_SYNC_LOCK - passive model, less synchronous, requires less setup than PETSCSF_WINDOW_SYNC_ACTIVE, but may require more handshakes $ PETSCSF_WINDOW_SYNC_ACTIVE - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_WINDOW_SYNC_LOCK) Level: advanced .seealso: PetscSFWindowSetSyncType(), PetscSFWindowGetSyncType() E*/ typedef enum {PETSCSF_WINDOW_SYNC_FENCE,PETSCSF_WINDOW_SYNC_LOCK,PETSCSF_WINDOW_SYNC_ACTIVE} PetscSFWindowSyncType; PETSC_EXTERN const char *const PetscSFWindowSyncTypes[]; /*E PetscSFDuplicateOption - Aspects to preserve when duplicating a PetscSF $ PETSCSF_DUPLICATE_CONFONLY - configuration only, user must call PetscSFSetGraph() $ PETSCSF_DUPLICATE_RANKS - communication ranks preserved, but different graph (allows simpler setup after calling PetscSFSetGraph()) $ PETSCSF_DUPLICATE_GRAPH - entire graph duplicated Level: beginner .seealso: PetscSFDuplicate() E*/ typedef enum {PETSCSF_DUPLICATE_CONFONLY,PETSCSF_DUPLICATE_RANKS,PETSCSF_DUPLICATE_GRAPH} PetscSFDuplicateOption; PETSC_EXTERN const char *const PetscSFDuplicateOptions[]; PETSC_EXTERN PetscFunctionList PetscSFunctionList; PETSC_EXTERN PetscErrorCode PetscSFRegisterDestroy(void); PETSC_EXTERN PetscErrorCode PetscSFRegisterAll(const char[]); PETSC_EXTERN PetscErrorCode PetscSFRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscSF)); /*MC PetscSFRegisterDynamic - Adds an implementation of the PetscSF communication protocol. Synopsis: #include "petscsf.h" PetscErrorCode PetscSFRegisterDynamic(const char *name_method,const char *path,const char *name_create,PetscErrorCode (*routine_create)(PetscSF)) Not collective Input Parameters: + name_impl - name of a new user-defined implementation . path - path (either absolute or relative) the library containing this solver . name_create - name of routine to create method context - routine_create - routine to create method context Notes: PetscSFRegisterDynamic() may be called multiple times to add several user-defined implementations. If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. Environmental variables such as ${PETSC_ARCH}, ${PETSC_DIR}, ${PETSC_LIB_DIR}, and others of the form ${any_environmental_variable} occuring in pathname will be replaced with appropriate values. Sample usage: .vb PetscSFRegisterDynamic("my_impl",/home/username/my_lib/lib/libg/solaris/mylib.a, "MyImplCreate",MyImplCreate); .ve Then, this implementation can be chosen with the procedural interface via $ PetscSFSetType(sf,"my_impl") or at runtime via the option $ -snes_type my_solver Level: advanced Note: If your function is not being put into a shared library then use PetscSFRegister() instead .keywords: PetscSF, register .seealso: PetscSFRegisterAll(), PetscSFRegisterDestroy() M*/ #if defined(PETSC_USE_DYNAMIC_LIBRARIES) #define PetscSFRegisterDynamic(a,b,c,d) PetscSFRegister(a,b,c,0) #else #define PetscSFRegisterDynamic(a,b,c,d) PetscSFRegister(a,b,c,d) #endif PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(const char*); PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void); PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF*); PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF*); PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF,PetscSFType); PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF,PetscViewer); PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF); PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF); PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF,PetscSFDuplicateOption,PetscSF*); PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF,PetscSFWindowSyncType); PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF,PetscSFWindowSyncType*); PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF,PetscBool); PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF,PetscInt,PetscInt,const PetscInt*,PetscCopyMode,const PetscSFNode*,PetscCopyMode); PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote); PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF,PetscInt*,PetscInt*); PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF,PetscInt nroots,const PetscInt *selected,PetscSF *newsf); PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF); PETSC_EXTERN PetscErrorCode PetscSFGetRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**,const PetscInt**); PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF,MPI_Group*,MPI_Group*); PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF,PetscSF*); PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF,PetscSF*); /* broadcasts rootdata to leafdata */ PETSC_EXTERN PetscErrorCode PetscSFBcastBegin(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); PETSC_EXTERN PetscErrorCode PetscSFBcastEnd(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); /* Reduce leafdata into rootdata using provided operation */ PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */ PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2); PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2); /* Compute the degree of every root vertex (number of leaves in its star) */ PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF,const PetscInt **degree); PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF,const PetscInt **degree); /* Concatenate data from all leaves into roots */ PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); /* Distribute distinct values to each leaf from roots */ PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata) PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); #endif