/* A star forest (SF) describes a communication pattern */ #ifndef PETSCSF_H #define PETSCSF_H #include #include #include /* for Vec, VecScatter etc */ /* SUBMANSEC = PetscSF */ PETSC_EXTERN PetscClassId PETSCSF_CLASSID; #define PETSCSFBASIC "basic" #define PETSCSFNEIGHBOR "neighbor" #define PETSCSFALLGATHERV "allgatherv" #define PETSCSFALLGATHER "allgather" #define PETSCSFGATHERV "gatherv" #define PETSCSFGATHER "gather" #define PETSCSFALLTOALL "alltoall" #define PETSCSFWINDOW "window" /*E PetscSFPattern - Pattern of the PetscSF graph $ `PETSCSF_PATTERN_GENERAL` - A general graph. One sets the graph with PetscSFSetGraph() and usually does not use this enum directly. $ `PETSCSF_PATTERN_ALLGATHER` - A graph that every rank gathers all roots from all ranks (like `MPI_Allgather()`). One sets the graph with `PetscSFSetGraphWithPattern()`. $ `PETSCSF_PATTERN_GATHER` - A graph that rank 0 gathers all roots from all ranks (like `MPI_Gatherv()` with root=0). One sets the graph with `PetscSFSetGraphWithPattern()`. $ `PETSCSF_PATTERN_ALLTOALL` - A graph that every rank gathers different roots from all ranks (like `MPI_Alltoall()`). One sets the graph with `PetscSFSetGraphWithPattern()`. In an ALLTOALL graph, we assume each process has leaves and roots, with each leaf connecting to a remote root. Here is the size of the communicator. This does not mean one can not communicate multiple data items between a pair of processes. One just needs to create a new MPI datatype for the multiple data items, e.g., by `MPI_Type_contiguous`. Level: beginner .seealso: `PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()` E*/ typedef enum { PETSCSF_PATTERN_GENERAL = 0, PETSCSF_PATTERN_ALLGATHER, PETSCSF_PATTERN_GATHER, PETSCSF_PATTERN_ALLTOALL } PetscSFPattern; /*E PetscSFWindowSyncType - Type of synchronization for `PETSCSFWINDOW` $ `PETSCSF_WINDOW_SYNC_FENCE` - simplest model, synchronizing across communicator $ `PETSCSF_WINDOW_SYNC_LOCK` - passive model, less synchronous, requires less setup than PETSCSF_WINDOW_SYNC_ACTIVE, but may require more handshakes $ `PETSCSF_WINDOW_SYNC_ACTIVE` - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_WINDOW_SYNC_LOCK) Level: advanced .seealso: `PetscSFWindowSetSyncType()`, `PetscSFWindowGetSyncType()` E*/ typedef enum { PETSCSF_WINDOW_SYNC_FENCE, PETSCSF_WINDOW_SYNC_LOCK, PETSCSF_WINDOW_SYNC_ACTIVE } PetscSFWindowSyncType; PETSC_EXTERN const char *const PetscSFWindowSyncTypes[]; /*E PetscSFWindowFlavorType - Flavor for the creation of MPI windows for PETSCSFWINDOW $ `PETSCSF_WINDOW_FLAVOR_CREATE` - Use `MPI_Win_create()`, no reuse $ `PETSCSF_WINDOW_FLAVOR_DYNAMIC` - Use `MPI_Win_create_dynamic()` and dynamically attach pointers $ `PETSCSF_WINDOW_FLAVOR_ALLOCATE` - Use `MPI_Win_allocate()` $ `PETSCSF_WINDOW_FLAVOR_SHARED` - Use `MPI_Win_allocate_shared()` Level: advanced .seealso: `PetscSFWindowSetFlavorType()`, `PetscSFWindowGetFlavorType()` E*/ typedef enum { PETSCSF_WINDOW_FLAVOR_CREATE, PETSCSF_WINDOW_FLAVOR_DYNAMIC, PETSCSF_WINDOW_FLAVOR_ALLOCATE, PETSCSF_WINDOW_FLAVOR_SHARED } PetscSFWindowFlavorType; PETSC_EXTERN const char *const PetscSFWindowFlavorTypes[]; /*E PetscSFDuplicateOption - Aspects to preserve when duplicating a `PetscSF` $ `PETSCSF_DUPLICATE_CONFONLY` - configuration only, user must call `PetscSFSetGraph()` $ `PETSCSF_DUPLICATE_RANKS` - communication ranks preserved, but different graph (allows simpler setup after calling `PetscSFSetGraph()`) $ `PETSCSF_DUPLICATE_GRAPH` - entire graph duplicated Level: beginner .seealso: `PetscSFDuplicate()` E*/ typedef enum { PETSCSF_DUPLICATE_CONFONLY, PETSCSF_DUPLICATE_RANKS, PETSCSF_DUPLICATE_GRAPH } PetscSFDuplicateOption; PETSC_EXTERN const char *const PetscSFDuplicateOptions[]; PETSC_EXTERN PetscFunctionList PetscSFList; PETSC_EXTERN PetscErrorCode PetscSFRegister(const char[], PetscErrorCode (*)(PetscSF)); PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(void); PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void); PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm, PetscSF *); PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF *); PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF, PetscSFType); PETSC_EXTERN PetscErrorCode PetscSFGetType(PetscSF, PetscSFType *); PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF, PetscViewer); PETSC_EXTERN PetscErrorCode PetscSFViewFromOptions(PetscSF, PetscObject, const char[]); PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF); PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF); PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF, PetscSFDuplicateOption, PetscSF *); PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF, PetscSFWindowSyncType); PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF, PetscSFWindowSyncType *); PETSC_EXTERN PetscErrorCode PetscSFWindowSetFlavorType(PetscSF, PetscSFWindowFlavorType); PETSC_EXTERN PetscErrorCode PetscSFWindowGetFlavorType(PetscSF, PetscSFWindowFlavorType *); PETSC_EXTERN PetscErrorCode PetscSFWindowSetInfo(PetscSF, MPI_Info); PETSC_EXTERN PetscErrorCode PetscSFWindowGetInfo(PetscSF, MPI_Info *); PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF, PetscBool); PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF, PetscInt, PetscInt, PetscInt *, PetscCopyMode, PetscSFNode *, PetscCopyMode); PETSC_EXTERN PetscErrorCode PetscSFSetGraphWithPattern(PetscSF, PetscLayout, PetscSFPattern); PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF, PetscInt *, PetscInt *, const PetscInt **, const PetscSFNode **); PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF, PetscInt *, PetscInt *); PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF, PetscInt, const PetscInt *, PetscSF *); PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF, PetscInt, const PetscInt *, PetscSF *); PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF); PETSC_EXTERN PetscErrorCode PetscSFSetUpRanks(PetscSF, MPI_Group); PETSC_EXTERN PetscErrorCode PetscSFGetRootRanks(PetscSF, PetscInt *, const PetscMPIInt **, const PetscInt **, const PetscInt **, const PetscInt **); PETSC_EXTERN PetscErrorCode PetscSFGetLeafRanks(PetscSF, PetscInt *, const PetscMPIInt **, const PetscInt **, const PetscInt **); PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF, MPI_Group *, MPI_Group *); PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF, PetscSF *); PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF, PetscSF *); PETSC_EXTERN PetscErrorCode PetscSFConcatenate(MPI_Comm, PetscInt, PetscSF[], PetscBool, PetscInt[], PetscSF *); /* Build PetscSF from PetscLayout */ PETSC_EXTERN PetscErrorCode PetscSFSetGraphLayout(PetscSF, PetscLayout, PetscInt, PetscInt *, PetscCopyMode, const PetscInt *); PETSC_EXTERN PetscErrorCode PetscSFGetGraphLayout(PetscSF, PetscLayout *, PetscInt *, const PetscInt *[], PetscInt *[]); PETSC_EXTERN PetscErrorCode PetscSFCreateFromLayouts(PetscLayout, PetscLayout, PetscSF *); PETSC_EXTERN PetscErrorCode PetscSFCreateByMatchingIndices(PetscLayout, PetscInt, const PetscInt *, const PetscInt *, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscInt, PetscSF *, PetscSF *); /* PetscSection interoperability */ PETSC_EXTERN PetscErrorCode PetscSFSetGraphSection(PetscSF, PetscSection, PetscSection); PETSC_EXTERN PetscErrorCode PetscSFCreateRemoteOffsets(PetscSF, PetscSection, PetscSection, PetscInt **); PETSC_EXTERN PetscErrorCode PetscSFDistributeSection(PetscSF, PetscSection, PetscInt **, PetscSection); PETSC_EXTERN PetscErrorCode PetscSFCreateSectionSF(PetscSF, PetscSection, PetscInt[], PetscSection, PetscSF *); /* Reduce rootdata to leafdata using provided operation */ PETSC_EXTERN PetscErrorCode PetscSFBcastBegin(PetscSF, MPI_Datatype, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2); PETSC_EXTERN PetscErrorCode PetscSFBcastEnd(PetscSF, MPI_Datatype, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2); PETSC_EXTERN PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF, MPI_Datatype, PetscMemType, const void *, PetscMemType, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(6, 2); /* Reduce leafdata into rootdata using provided operation */ PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF, MPI_Datatype, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2); PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF, MPI_Datatype, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2); PETSC_EXTERN PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF, MPI_Datatype, PetscMemType, const void *, PetscMemType, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(6, 2); /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */ PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF, MPI_Datatype, void *, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(5, 2); PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF, MPI_Datatype, void *, const void *, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(5, 2); PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF, MPI_Datatype, PetscMemType, void *, PetscMemType, const void *, PetscMemType, void *, MPI_Op) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(6, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(8, 2); /* Compute the degree of every root vertex (number of leaves in its star) */ PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF, const PetscInt **); PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF, const PetscInt **); PETSC_EXTERN PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF, const PetscInt[], PetscInt *, PetscInt *[]); /* Concatenate data from all leaves into roots */ PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF, MPI_Datatype, const void *, void *) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2); PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF, MPI_Datatype, const void *, void *) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2); /* Distribute distinct values to each leaf from roots */ PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF, MPI_Datatype, const void *, void *) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2); PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF, MPI_Datatype, const void *, void *) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(3, 2) PETSC_ATTRIBUTE_MPI_POINTER_WITH_TYPE(4, 2); PETSC_EXTERN PetscErrorCode PetscSFCompose(PetscSF, PetscSF, PetscSF *); PETSC_EXTERN PetscErrorCode PetscSFComposeInverse(PetscSF, PetscSF, PetscSF *); #define MPIU_REPLACE MPI_REPLACE PETSC_DEPRECATED_MACRO("GCC warning \"MPIU_REPLACE macro is deprecated use MPI_REPLACE (since version 3.15)\"") PETSC_DEPRECATED_FUNCTION("Use PetscSFGetRootRanks (since v3.12)") static inline PetscErrorCode PetscSFGetRanks(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote) { return PetscSFGetRootRanks(sf, nranks, ranks, roffset, rmine, rremote); } PETSC_DEPRECATED_FUNCTION("Use PetscSFCreateEmbeddedRootSF (since v3.15)") static inline PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *esf) { return PetscSFCreateEmbeddedRootSF(sf, nselected, selected, esf); } PETSC_DEPRECATED_FUNCTION("Use PetscSFBcastBegin (since v3.15)") static inline PetscErrorCode PetscSFBcastAndOpBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) { return PetscSFBcastBegin(sf, unit, rootdata, leafdata, op); } PETSC_DEPRECATED_FUNCTION("Use PetscSFBcastEnd (since v3.15)") static inline PetscErrorCode PetscSFBcastAndOpEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) { return PetscSFBcastEnd(sf, unit, rootdata, leafdata, op); } PETSC_DEPRECATED_FUNCTION("Use PetscSFBcastWithMemTypeBegin (since v3.15)") static inline PetscErrorCode PetscSFBcastAndOpWithMemtypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) { return PetscSFBcastWithMemTypeBegin(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op); } #endif