#if !defined(PETSCVIEWERHDF5_H) #define PETSCVIEWERHDF5_H #include #if defined(PETSC_HAVE_HDF5) #include #if !defined(H5_VERSION_GE) /* H5_VERSION_GE was introduced in HDF5 1.8.7, we support >= 1.8.0 */ /* So beware this will automatically 0 for HDF5 1.8.0 - 1.8.6 */ #define H5_VERSION_GE(a,b,c) 0 #endif PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetFileId(PetscViewer,hid_t*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5OpenGroup(PetscViewer, hid_t *, hid_t *); /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ #define PETSC_HDF5_INT_MAX (~(hsize_t)0) /* As per https://portal.hdfgroup.org/display/HDF5/Chunking+in+HDF5, max. chunk size is 4GB */ #define PETSC_HDF5_MAX_CHUNKSIZE 2147483647 PETSC_STATIC_INLINE PetscErrorCode PetscViewerHDF5PathIsRelative(const char path[], PetscBool emptyIsRelative, PetscBool *has) { PetscErrorCode ierr; size_t len; PetscFunctionBegin; *has = emptyIsRelative; ierr = PetscStrlen(path,&len);CHKERRQ(ierr); if (len) { *has = (PetscBool) (path[0] != '/'); } PetscFunctionReturn(0); } PETSC_STATIC_INLINE PetscErrorCode PetscHDF5IntCast(PetscInt a,hsize_t *b) { PetscFunctionBegin; if (a < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Cannot convert negative size"); #if defined(PETSC_USE_64BIT_INDICES) && (H5_SIZEOF_HSIZE_T == 4) if (a > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5"); #endif *b = (hsize_t)(a); PetscFunctionReturn(0); } PETSC_EXTERN PetscErrorCode PetscDataTypeToHDF5DataType(PetscDataType,hid_t*); PETSC_EXTERN PetscErrorCode PetscHDF5DataTypeToPetscDataType(hid_t,PetscDataType*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasDataset(PetscViewer,const char[],PetscBool*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasObject(PetscViewer,PetscObject,PetscBool*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadAttribute(PetscViewer,const char[],const char[],PetscDataType,const void*,void*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteAttribute(PetscViewer,const char[],const char[],PetscDataType,const void*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasAttribute(PetscViewer,const char[],const char[],PetscBool*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadObjectAttribute(PetscViewer,PetscObject,const char[],PetscDataType,void*,void*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteObjectAttribute(PetscViewer,PetscObject,const char[],PetscDataType,const void*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasObjectAttribute(PetscViewer,PetscObject,const char[],PetscBool*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5Open(MPI_Comm,const char[],PetscFileMode,PetscViewer*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushGroup(PetscViewer,const char[]); PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopGroup(PetscViewer); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetGroup(PetscViewer,const char*[]); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasGroup(PetscViewer,const char[],PetscBool*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushTimestepping(PetscViewer); PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopTimestepping(PetscViewer); PETSC_EXTERN PetscErrorCode PetscViewerHDF5IsTimestepping(PetscViewer,PetscBool*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5IncrementTimestep(PetscViewer); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetTimestep(PetscViewer,PetscInt); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetTimestep(PetscViewer,PetscInt*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetBaseDimension2(PetscViewer,PetscBool); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetBaseDimension2(PetscViewer,PetscBool*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetSPOutput(PetscViewer,PetscBool); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetSPOutput(PetscViewer,PetscBool*); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetCollective(PetscViewer,PetscBool); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetCollective(PetscViewer,PetscBool*); #endif /* defined(PETSC_HAVE_HDF5) */ #endif