#pragma once #include /* MANSEC = Viewer */ #if defined(PETSC_HAVE_HDF5) #include #if !defined(H5_VERSION_GE) /* H5_VERSION_GE was introduced in HDF5 1.8.7, we support >= 1.8.0 */ /* So beware this will automatically 0 for HDF5 1.8.0 - 1.8.6 */ #define H5_VERSION_GE(a, b, c) 0 #endif // HDF5 1.13.0 switched from hsize_t being typedef'd to unsigned long long to being uint64_t and introduced the // PRIuHSIZE macro for printing. Definition of PRIuHSIZE actually precedes the change of typedef in the Git history, // though there was never a release with the old definitions. Nonetheless, the logic here will work any commit. #if !defined(PRIuHSIZE) #define PRIuHSIZE "llu" #endif PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetFileId(PetscViewer, hid_t *); /* On 32-bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ #define PETSC_HDF5_INT_MAX (~(hsize_t)0) /* As per https://portal.hdfgroup.org/display/HDF5/Chunking+in+HDF5, max. chunk size is 4GB */ #define PETSC_HDF5_MAX_CHUNKSIZE 2147483647 static inline PetscErrorCode PetscViewerHDF5PathIsRelative(const char path[], PetscBool emptyIsRelative, PetscBool *has) PeNS { size_t len; PetscFunctionBegin; *has = emptyIsRelative; PetscCall(PetscStrlen(path, &len)); if (len) *has = (PetscBool)(path[0] != '/'); PetscFunctionReturn(PETSC_SUCCESS); } static inline PetscErrorCode PetscHDF5IntCast(PetscInt a, hsize_t *b) { PetscFunctionBegin; PetscCheck(a >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot convert negative size"); #if defined(PETSC_USE_64BIT_INDICES) && (H5_SIZEOF_HSIZE_T == 4) PetscCheck(a >= PETSC_HDF5_INT_MAX, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Array too long for HDF5"); #endif *b = (hsize_t)(a); PetscFunctionReturn(PETSC_SUCCESS); } PETSC_EXTERN PetscErrorCode PetscDataTypeToHDF5DataType(PetscDataType, hid_t *); PETSC_EXTERN PetscErrorCode PetscHDF5DataTypeToPetscDataType(hid_t, PetscDataType *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasDataset(PetscViewer, const char[], PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasObject(PetscViewer, PetscObject, PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadAttribute(PetscViewer, const char[], const char[], PetscDataType, const void *, void *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteAttribute(PetscViewer, const char[], const char[], PetscDataType, const void *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasAttribute(PetscViewer, const char[], const char[], PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadObjectAttribute(PetscViewer, PetscObject, const char[], PetscDataType, void *, void *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteObjectAttribute(PetscViewer, PetscObject, const char[], PetscDataType, const void *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasObjectAttribute(PetscViewer, PetscObject, const char[], PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5Open(MPI_Comm, const char[], PetscFileMode, PetscViewer *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushGroup(PetscViewer, const char[]); PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopGroup(PetscViewer); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetGroup(PetscViewer, const char[], const char *[]); PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasGroup(PetscViewer, const char[], PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5OpenGroup(PetscViewer, const char[], hid_t *, hid_t *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteGroup(PetscViewer, const char[]); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetDefaultTimestepping(PetscViewer, PetscBool); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetDefaultTimestepping(PetscViewer, PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushTimestepping(PetscViewer); PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopTimestepping(PetscViewer); PETSC_EXTERN PetscErrorCode PetscViewerHDF5IsTimestepping(PetscViewer, PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5IncrementTimestep(PetscViewer); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetTimestep(PetscViewer, PetscInt); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetTimestep(PetscViewer, PetscInt *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetBaseDimension2(PetscViewer, PetscBool); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetBaseDimension2(PetscViewer, PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetSPOutput(PetscViewer, PetscBool); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetSPOutput(PetscViewer, PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetCollective(PetscViewer, PetscBool); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetCollective(PetscViewer, PetscBool *); PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetCompress(PetscViewer, PetscBool); PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetCompress(PetscViewer, PetscBool *); #endif /* defined(PETSC_HAVE_HDF5) */