#!/usr/bin/env python import os,sys sys.path.append(os.path.join(os.environ['PETSC_DIR'], 'config')) from builder2 import buildExample from benchmarkBatch import generateBatchScript class PETSc(object): def __init__(self): return def dir(self): '''Return the root directory for the PETSc tree (usually $PETSC_DIR)''' # This should search for a valid PETSc return os.environ['PETSC_DIR'] def arch(self): '''Return the PETSc build label (usually $PETSC_ARCH)''' # This should be configurable return os.environ['PETSC_ARCH'] def mpiexec(self): '''Return the path for the mpi launch executable''' mpiexec = os.path.join(self.dir(), self.arch(), 'bin', 'mpiexec') if not os.path.isfile(mpiexec): return None return mpiexec def example(self, num): '''Return the path to the executable for a given example number''' return os.path.join(self.dir(), self.arch(), 'lib', 'ex'+str(num)+'-obj', 'ex'+str(num)) def source(self, library, num): '''Return the path to the sources for a given example number''' d = os.path.join(self.dir(), 'src', library.lower(), 'examples', 'tutorials') name = 'ex'+str(num) sources = [] for f in os.listdir(d): if f == name+'.c': sources.insert(0, f) elif f.startswith(name) and f.endswith('.cu'): sources.append(f) return map(lambda f: os.path.join(d, f), sources) class PETScExample(object): def __init__(self, library, num, **defaultOptions): self.petsc = PETSc() self.library = library self.num = num self.opts = defaultOptions return @staticmethod def runShellCommand(command, cwd = None, log = True): import subprocess Popen = subprocess.Popen PIPE = subprocess.PIPE if log: print 'Executing: %s\n' % (command,) pipe = Popen(command, cwd=cwd, stdin=None, stdout=PIPE, stderr=PIPE, bufsize=-1, shell=True, universal_newlines=True) (out, err) = pipe.communicate() ret = pipe.returncode return (out, err, ret) def optionsToString(self, **opts): '''Convert a dictionary of options to a command line argument string''' a = [] for key,value in opts.iteritems(): if value is None: a.append('-'+key) else: a.append('-'+key+' '+str(value)) return ' '.join(a) def run(self, numProcs = 1, log = True, **opts): if self.petsc.mpiexec() is None: cmd = self.petsc.example(self.num) else: cmd = ' '.join([self.petsc.mpiexec(), '-n', str(numProcs), self.petsc.example(self.num)]) cmd += ' '+self.optionsToString(**self.opts)+' '+self.optionsToString(**opts) if 'batch' in opts and opts['batch']: del opts['batch'] filename = generateBatchScript(self.num, numProcs, 120, ' '+self.optionsToString(**self.opts)+' '+self.optionsToString(**opts)) # Submit job out, err, ret = self.runShellCommand('qsub -q gpu '+filename, log = log) if ret: print err print out else: out, err, ret = self.runShellCommand(cmd, log = log) if ret: print err print out return out def processSummary(moduleName, defaultStage, eventNames, times, events): '''Process the Python log summary into plot data''' m = __import__(moduleName) reload(m) # Total Time times.append(m.Time[0]) # Particular events for name in eventNames: if name.find(':') >= 0: stageName, name = name.split(':', 1) stage = getattr(m, stageName) else: stage = getattr(m, defaultStage) if name in stage.event: if not name in events: events[name] = [] try: events[name].append((stage.event[name].Time[0], stage.event[name].Flops[0]/(stage.event[name].Time[0] * 1e6))) except ZeroDivisionError: events[name].append((stage.event[name].Time[0], 0)) return def plotTime(library, num, eventNames, sizes, times, events): from pylab import legend, plot, show, title, xlabel, ylabel import numpy as np arches = sizes.keys() data = [] for arch in arches: data.append(sizes[arch]) data.append(times[arch]) plot(*data) title('Performance on '+library+' Example '+str(num)) xlabel('Number of Dof') ylabel('Time (s)') legend(arches, 'upper left', shadow = True) show() return def plotEventTime(library, num, eventNames, sizes, times, events, filename = None): from pylab import close, legend, plot, savefig, show, title, xlabel, ylabel import numpy as np close() arches = sizes.keys() bs = events[arches[0]].keys()[0] data = [] names = [] for event, color in zip(eventNames, ['b', 'g', 'r', 'y']): for arch, style in zip(arches, ['-', ':']): if event in events[arch][bs]: names.append(arch+'-'+str(bs)+' '+event) data.append(sizes[arch][bs]) data.append(np.array(events[arch][bs][event])[:,0]) data.append(color+style) else: print 'Could not find %s in %s-%d events' % (event, arch, bs) print data plot(*data) title('Performance on '+library+' Example '+str(num)) xlabel('Number of Dof') ylabel('Time (s)') legend(names, 'upper left', shadow = True) if filename is None: show() else: savefig(filename) return def plotEventFlop(library, num, eventNames, sizes, times, events, filename = None): from pylab import legend, plot, savefig, semilogy, show, title, xlabel, ylabel import numpy as np arches = sizes.keys() bs = events[arches[0]].keys()[0] data = [] names = [] for event, color in zip(eventNames, ['b', 'g', 'r', 'y']): for arch, style in zip(arches, ['-', ':']): if event in events[arch][bs]: names.append(arch+'-'+str(bs)+' '+event) data.append(sizes[arch][bs]) data.append(1e-3*np.array(events[arch][bs][event])[:,1]) data.append(color+style) else: print 'Could not find %s in %s-%d events' % (event, arch, bs) semilogy(*data) title('Performance on '+library+' Example '+str(num)) xlabel('Number of Dof') ylabel('Computation Rate (GF/s)') legend(names, 'upper left', shadow = True) if filename is None: show() else: savefig(filename) return def plotSummaryLine(library, num, eventNames, sizes, times, events): from pylab import legend, plot, show, title, xlabel, ylabel import numpy as np showTime = False showEventTime = True showEventFlops = True arches = sizes.keys() # Time if showTime: data = [] for arch in arches: data.append(sizes[arch]) data.append(times[arch]) plot(*data) title('Performance on '+library+' Example '+str(num)) xlabel('Number of Dof') ylabel('Time (s)') legend(arches, 'upper left', shadow = True) show() # Common event time # We could make a stacked plot like Rio uses here if showEventTime: bs = events[arches[0]].keys()[0] data = [] names = [] for event, color in zip(eventNames, ['b', 'g', 'r', 'y']): for arch, style in zip(arches, ['-', ':']): if event in events[arch][bs]: names.append(arch+'-'+str(bs)+' '+event) data.append(sizes[arch][bs]) data.append(np.array(events[arch][bs][event])[:,0]) data.append(color+style) else: print 'Could not find %s in %s-%d events' % (event, arch, bs) print data plot(*data) title('Performance on '+library+' Example '+str(num)) xlabel('Number of Dof') ylabel('Time (s)') legend(names, 'upper left', shadow = True) show() # Common event flops # We could make a stacked plot like Rio uses here if showEventFlops: bs = events[arches[0]].keys()[0] data = [] names = [] for event, color in zip(eventNames, ['b', 'g', 'r', 'y']): for arch, style in zip(arches, ['-', ':']): if event in events[arch][bs]: names.append(arch+'-'+str(bs)+' '+event) data.append(sizes[arch][bs]) data.append(np.array(events[arch][bs][event])[:,1]) data.append(color+style) else: print 'Could not find %s in %s-%d events' % (event, arch, bs) plot(*data) title('Performance on '+library+' Example '+str(num)) xlabel('Number of Dof') ylabel('Computation Rate (MF/s)') legend(names, 'upper left', shadow = True) show() return def plotSummaryBar(library, num, eventNames, sizes, times, events): import numpy as np import matplotlib.pyplot as plt eventColors = ['b', 'g', 'r', 'y'] arches = sizes.keys() names = [] N = len(sizes[arches[0]]) width = 0.2 ind = np.arange(N) - 0.25 bars = {} for arch in arches: bars[arch] = [] bottom = np.zeros(N) for event, color in zip(eventNames, eventColors): names.append(arch+' '+event) times = np.array(events[arch][event])[:,0] bars[arch].append(plt.bar(ind, times, width, color=color, bottom=bottom)) bottom += times ind += 0.3 plt.xlabel('Number of Dof') plt.ylabel('Time (s)') plt.title('GPU vs. CPU Performance on '+library+' Example '+str(num)) plt.xticks(np.arange(N), map(str, sizes[arches[0]])) #plt.yticks(np.arange(0,81,10)) #plt.legend( (p1[0], p2[0]), ('Men', 'Women') ) plt.legend([bar[0] for bar in bars[arches[0]]], eventNames, 'upper right', shadow = True) plt.show() return def getDMComplexSize(dim, out): '''Retrieves the number of cells from ''' size = 0 for line in out.split('\n'): if line.strip().startswith(str(dim)+'-cells: '): size = int(line.strip()[9:]) break return size def run_DMDA(ex, name, opts, args, sizes, times, events, log=True): for n in map(int, args.size): ex.run(log=log, da_grid_x=n, da_grid_y=n, **opts) sizes[name].append(n*n * args.comp) processSummary('summary', args.stage, args.events, times[name], events[name]) return def run_DMComplex(ex, name, opts, args, sizes, times, events, log=True): # This should eventually be replaced by a direct FFC/Ignition interface if args.operator == 'laplacian': numComp = 1 elif args.operator == 'elasticity': numComp = args.dim else: raise RuntimeError('Unknown operator: %s' % args.operator) for numBlock in [2**i for i in map(int, args.blockExp)]: opts['gpu_blocks'] = numBlock # Generate new block size cmd = './bin/pythonscripts/PetscGenerateFEMQuadrature.py %d %d %d %d %s %s.h' % (args.dim, args.order, numComp, numBlock, args.operator, os.path.splitext(source[0])[0]) print(cmd) ret = os.system('python '+cmd) args.files = ['['+','.join(source)+']'] buildExample(args) sizes[name][numBlock] = [] times[name][numBlock] = [] events[name][numBlock] = {} for r in map(float, args.refine): out = ex.run(log=log, refinement_limit=r, **opts) sizes[name][numBlock].append(getDMComplexSize(args.dim, out)) processSummary('summary', args.stage, args.events, times[name][numBlock], events[name][numBlock]) return def outputData(sizes, times, events, name = 'output.py'): if os.path.exists(name): base, ext = os.path.splitext(name) num = 1 while os.path.exists(base+str(num)+ext): num += 1 name = base+str(num)+ext with file(name, 'w') as f: f.write('#PETSC_ARCH='+os.environ['PETSC_ARCH']+' '+' '.join(sys.argv)+'\n') f.write('sizes = '+repr(sizes)+'\n') f.write('times = '+repr(times)+'\n') f.write('events = '+repr(events)+'\n') return if __name__ == '__main__': import argparse parser = argparse.ArgumentParser(description = 'PETSc Benchmarking', epilog = 'This script runs src//examples/tutorials/ex, For more information, visit http://www.mcs.anl.gov/petsc', formatter_class = argparse.ArgumentDefaultsHelpFormatter) parser.add_argument('--library', default='SNES', help='The PETSc library used in this example') parser.add_argument('--num', type = int, default='5', help='The example number') parser.add_argument('--module', default='summary', help='The module for timing output') parser.add_argument('--stage', default='Main_Stage', help='The default logging stage') parser.add_argument('--events', nargs='+', help='Events to process') parser.add_argument('--batch', action='store_true', default=False, help='Generate batch files for the runs instead') parser.add_argument('--daemon', action='store_true', default=False, help='Run as a daemon') subparsers = parser.add_subparsers(help='DM types') parser_dmda = subparsers.add_parser('DMDA', help='Use a DMDA for the problem geometry') parser_dmda.add_argument('--size', nargs='+', default=['10'], help='Grid size (implementation dependent)') parser_dmda.add_argument('--comp', type = int, default='1', help='Number of field components') parser_dmda.add_argument('runs', nargs='*', help='Run descriptions: =') parser_dmmesh = subparsers.add_parser('DMComplex', help='Use a DMComplex for the problem geometry') parser_dmmesh.add_argument('--dim', type = int, default='2', help='Spatial dimension') parser_dmmesh.add_argument('--refine', nargs='+', default=['0.0'], help='List of refinement limits') parser_dmmesh.add_argument('--order', type = int, default='1', help='Order of the finite element') parser_dmmesh.add_argument('--operator', default='laplacian', help='The operator name') parser_dmmesh.add_argument('--blockExp', nargs='+', default=range(0, 5), help='List of block exponents j, block size is 2^j') parser_dmmesh.add_argument('runs', nargs='*', help='Run descriptions: =') args = parser.parse_args() print(args) if hasattr(args, 'comp'): args.dmType = 'DMDA' else: args.dmType = 'DMComplex' ex = PETScExample(args.library, args.num, log_summary='summary.dat', log_summary_python = None if args.batch else args.module+'.py', preload='off') source = ex.petsc.source(args.library, args.num) sizes = {} times = {} events = {} log = not args.daemon if args.daemon: import daemon print 'Starting daemon' daemon.createDaemon('.') for run in args.runs: name, stropts = run.split('=', 1) opts = dict([t if len(t) == 2 else (t[0], None) for t in [arg.split('=', 1) for arg in stropts.split(' ')]]) if args.dmType == 'DMDA': sizes[name] = [] times[name] = [] events[name] = {} run_DMDA(ex, name, opts, args, sizes, times, events, log=log) elif args.dmType == 'DMComplex': sizes[name] = {} times[name] = {} events[name] = {} run_DMComplex(ex, name, opts, args, sizes, times, events, log=log) outputData(sizes, times, events) if not args.batch and log: plotSummaryLine(args.library, args.num, args.events, sizes, times, events) # Benchmark for ex50 # ./src/benchmarks/benchmarkExample.py --events VecMDot VecMAXPY KSPGMRESOrthog MatMult VecCUSPCopyTo VecCUSPCopyFrom MatCUSPCopyTo --num 50 DMDA --size 10 20 50 100 --comp 4 CPU='pc_type=none mat_no_inode dm_vec_type=seq dm_mat_type=seqaij' GPU='pc_type=none mat_no_inode dm_vec_type=seqcusp dm_mat_type=seqaijcusp cusp_synchronize' # Benchmark for ex52 # ./src/benchmarks/benchmarkExample.py --events IntegBatchCPU IntegBatchGPU IntegGPUOnly --num 52 DMComplex --refine 0.0625 0.00625 0.000625 0.0000625 --blockExp 4 --order=1 CPU='dm_view show_residual=0 compute_function batch' GPU='dm_view show_residual=0 compute_function batch gpu gpu_batches=8' # ./src/benchmarks/benchmarkExample.py --events IntegBatchCPU IntegBatchGPU IntegGPUOnly --num 52 DMComplex --refine 0.0625 0.00625 0.000625 0.0000625 --blockExp 4 --order=1 --operator=elasticity CPU='dm_view op_type=elasticity show_residual=0 compute_function batch' GPU='dm_view op_type=elasticity show_residual=0 compute_function batch gpu gpu_batches=8' # ./src/benchmarks/benchmarkExample.py --events IntegBatchCPU IntegBatchGPU IntegGPUOnly --num 52 DMComplex --dim=3 --refine 0.0625 0.00625 0.000625 0.0000625 --blockExp 4 --order=1 CPU='dim=3 dm_view show_residual=0 compute_function batch' GPU='dim=3 dm_view show_residual=0 compute_function batch gpu gpu_batches=8'