import sys, petsc4py petsc4py.init(sys.argv) from petsc4py import PETSc import Bratu3D as Bratu3D class App(object): def __init__(self, da, lambda_): assert da.getDim() == 3 self.da = da self.params = Bratu3D.Params() self.params.lambda_ = lambda_ def formInitGuess(self, X): X.zeroEntries() # just in case Bratu3D.FormInitGuess(self.da, X, self.params) def formFunction(self, snes, X, F): F.zeroEntries() # just in case Bratu3D.FormFunction(self.da, X, F, self.params) def formJacobian(self, snes, X, J, P): P.zeroEntries() # just in case Bratu3D.FormJacobian(self.da, X, P, self.params) if J != P: J.assemble() # matrix-free operator return PETSc.Mat.Structure.SAME_NONZERO_PATTERN OptDB = PETSc.Options() N = OptDB.getInt('N', 16) lambda_ = OptDB.getReal('lambda', 6.0) do_plot = OptDB.getBool('plot', False) da = PETSc.DMDA().create([N, N, N], stencil_width=1) app = App(da, lambda_) snes = PETSc.SNES().create() F = da.createGlobalVec() snes.setFunction(app.formFunction, F) J = da.createMat() snes.setJacobian(app.formJacobian, J) snes.setFromOptions() X = da.createGlobalVec() app.formInitGuess(X) snes.solve(None, X) U = da.createNaturalVec() da.globalToNatural(X, U) def plot(da, U): scatter, U0 = PETSc.Scatter.toZero(U) scatter.scatter(U, U0, False, PETSc.Scatter.Mode.FORWARD) rank = PETSc.COMM_WORLD.getRank() if rank == 0: solution = U0[...].reshape(da.sizes, order='f').copy() try: from matplotlib import pyplot pyplot.contourf(solution[:, :, N//2]) pyplot.axis('equal') pyplot.show() except: pass PETSc.COMM_WORLD.barrier() scatter.destroy() U0.destroy() if do_plot: plot(da, U) U.destroy() X.destroy() F.destroy() J.destroy() da.destroy() snes.destroy()