#include /*I "petscfe.h" I*/ #include #include PetscErrorCode DMPlexGetTransitiveClosure_Internal(DM, PetscInt, PetscInt, PetscBool, PetscInt *, PetscInt *[]); struct _n_Petsc1DNodeFamily { PetscInt refct; PetscDTNodeType nodeFamily; PetscReal gaussJacobiExp; PetscInt nComputed; PetscReal **nodesets; PetscBool endpoints; }; /* users set node families for PETSCDUALSPACELAGRANGE with just the inputs to this function, but internally we create * an object that can cache the computations across multiple dual spaces */ static PetscErrorCode Petsc1DNodeFamilyCreate(PetscDTNodeType family, PetscReal gaussJacobiExp, PetscBool endpoints, Petsc1DNodeFamily *nf) { Petsc1DNodeFamily f; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscNew(&f);CHKERRQ(ierr); switch (family) { case PETSCDTNODES_GAUSSJACOBI: case PETSCDTNODES_EQUISPACED: f->nodeFamily = family; break; default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Unknown 1D node family"); } f->endpoints = endpoints; f->gaussJacobiExp = 0.; if (family == PETSCDTNODES_GAUSSJACOBI) { if (gaussJacobiExp <= -1.) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Gauss-Jacobi exponent must be > -1.\n"); f->gaussJacobiExp = gaussJacobiExp; } f->refct = 1; *nf = f; PetscFunctionReturn(0); } static PetscErrorCode Petsc1DNodeFamilyReference(Petsc1DNodeFamily nf) { PetscFunctionBegin; if (nf) nf->refct++; PetscFunctionReturn(0); } static PetscErrorCode Petsc1DNodeFamilyDestroy(Petsc1DNodeFamily *nf) { PetscInt i, nc; PetscErrorCode ierr; PetscFunctionBegin; if (!(*nf)) PetscFunctionReturn(0); if (--(*nf)->refct > 0) { *nf = NULL; PetscFunctionReturn(0); } nc = (*nf)->nComputed; for (i = 0; i < nc; i++) { ierr = PetscFree((*nf)->nodesets[i]);CHKERRQ(ierr); } ierr = PetscFree((*nf)->nodesets);CHKERRQ(ierr); ierr = PetscFree(*nf);CHKERRQ(ierr); *nf = NULL; PetscFunctionReturn(0); } static PetscErrorCode Petsc1DNodeFamilyGetNodeSets(Petsc1DNodeFamily f, PetscInt degree, PetscReal ***nodesets) { PetscInt nc; PetscErrorCode ierr; PetscFunctionBegin; nc = f->nComputed; if (degree >= nc) { PetscInt i, j; PetscReal **new_nodesets; PetscReal *w; ierr = PetscMalloc1(degree + 1, &new_nodesets);CHKERRQ(ierr); ierr = PetscArraycpy(new_nodesets, f->nodesets, nc);CHKERRQ(ierr); ierr = PetscFree(f->nodesets);CHKERRQ(ierr); f->nodesets = new_nodesets; ierr = PetscMalloc1(degree + 1, &w);CHKERRQ(ierr); for (i = nc; i < degree + 1; i++) { ierr = PetscMalloc1(i + 1, &(f->nodesets[i]));CHKERRQ(ierr); if (!i) { f->nodesets[i][0] = 0.5; } else { switch (f->nodeFamily) { case PETSCDTNODES_EQUISPACED: if (f->endpoints) { for (j = 0; j <= i; j++) f->nodesets[i][j] = (PetscReal) j / (PetscReal) i; } else { /* these nodes are at the centroids of the small simplices created by the equispaced nodes that include * the endpoints */ for (j = 0; j <= i; j++) f->nodesets[i][j] = ((PetscReal) j + 0.5) / ((PetscReal) i + 1.); } break; case PETSCDTNODES_GAUSSJACOBI: if (f->endpoints) { ierr = PetscDTGaussLobattoJacobiQuadrature(i + 1, 0., 1., f->gaussJacobiExp, f->gaussJacobiExp, f->nodesets[i], w);CHKERRQ(ierr); } else { ierr = PetscDTGaussJacobiQuadrature(i + 1, 0., 1., f->gaussJacobiExp, f->gaussJacobiExp, f->nodesets[i], w);CHKERRQ(ierr); } break; default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Unknown 1D node family"); } } } ierr = PetscFree(w);CHKERRQ(ierr); f->nComputed = degree + 1; } *nodesets = f->nodesets; PetscFunctionReturn(0); } /* http://arxiv.org/abs/2002.09421 for details */ static PetscErrorCode PetscNodeRecursive_Internal(PetscInt dim, PetscInt degree, PetscReal **nodesets, PetscInt tup[], PetscReal node[]) { PetscReal w; PetscInt i, j; PetscErrorCode ierr; PetscFunctionBeginHot; w = 0.; if (dim == 1) { node[0] = nodesets[degree][tup[0]]; node[1] = nodesets[degree][tup[1]]; } else { for (i = 0; i < dim + 1; i++) node[i] = 0.; for (i = 0; i < dim + 1; i++) { PetscReal wi = nodesets[degree][degree-tup[i]]; for (j = 0; j < dim+1; j++) tup[dim+1+j] = tup[j+(j>=i)]; ierr = PetscNodeRecursive_Internal(dim-1,degree-tup[i],nodesets,&tup[dim+1],&node[dim+1]);CHKERRQ(ierr); for (j = 0; j < dim+1; j++) node[j+(j>=i)] += wi * node[dim+1+j]; w += wi; } for (i = 0; i < dim+1; i++) node[i] /= w; } PetscFunctionReturn(0); } /* compute simplex nodes for the biunit simplex from the 1D node family */ static PetscErrorCode Petsc1DNodeFamilyComputeSimplexNodes(Petsc1DNodeFamily f, PetscInt dim, PetscInt degree, PetscReal points[]) { PetscInt *tup; PetscInt k; PetscInt npoints; PetscReal **nodesets = NULL; PetscInt worksize; PetscReal *nodework; PetscInt *tupwork; PetscErrorCode ierr; PetscFunctionBegin; if (dim < 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must have non-negative dimension\n"); if (degree < 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must have non-negative degree\n"); if (!dim) PetscFunctionReturn(0); ierr = PetscCalloc1(dim+2, &tup);CHKERRQ(ierr); k = 0; ierr = PetscDTBinomialInt(degree + dim, dim, &npoints);CHKERRQ(ierr); ierr = Petsc1DNodeFamilyGetNodeSets(f, degree, &nodesets);CHKERRQ(ierr); worksize = ((dim + 2) * (dim + 3)) / 2; ierr = PetscMalloc2(worksize, &nodework, worksize, &tupwork);CHKERRQ(ierr); /* loop over the tuples of length dim with sum at most degree */ for (k = 0; k < npoints; k++) { PetscInt i; /* turn thm into tuples of length dim + 1 with sum equal to degree (barycentric indice) */ tup[0] = degree; for (i = 0; i < dim; i++) { tup[0] -= tup[i+1]; } switch(f->nodeFamily) { case PETSCDTNODES_EQUISPACED: /* compute equispaces nodes on the unit reference triangle */ if (f->endpoints) { for (i = 0; i < dim; i++) { points[dim*k + i] = (PetscReal) tup[i+1] / (PetscReal) degree; } } else { for (i = 0; i < dim; i++) { /* these nodes are at the centroids of the small simplices created by the equispaced nodes that include * the endpoints */ points[dim*k + i] = ((PetscReal) tup[i+1] + 1./(dim+1.)) / (PetscReal) (degree + 1.); } } break; default: /* compute equispaces nodes on the barycentric reference triangle (the trace on the first dim dimensions are the * unit reference triangle nodes */ for (i = 0; i < dim + 1; i++) tupwork[i] = tup[i]; ierr = PetscNodeRecursive_Internal(dim, degree, nodesets, tupwork, nodework);CHKERRQ(ierr); for (i = 0; i < dim; i++) points[dim*k + i] = nodework[i + 1]; break; } ierr = PetscDualSpaceLatticePointLexicographic_Internal(dim, degree, &tup[1]);CHKERRQ(ierr); } /* map from unit simplex to biunit simplex */ for (k = 0; k < npoints * dim; k++) points[k] = points[k] * 2. - 1.; ierr = PetscFree2(nodework, tupwork);CHKERRQ(ierr); ierr = PetscFree(tup); PetscFunctionReturn(0); } /* If we need to get the dofs from a mesh point, or add values into dofs at a mesh point, and there is more than one dof * on that mesh point, we have to be careful about getting/adding everything in the right place. * * With nodal dofs like PETSCDUALSPACELAGRANGE makes, the general approach to calculate the value of dofs associate * with a node A is * - transform the node locations x(A) by the map that takes the mesh point to its reorientation, x' = phi(x(A)) * - figure out which node was originally at the location of the transformed point, A' = idx(x') * - if the dofs are not scalars, figure out how to represent the transformed dofs in terms of the basis * of dofs at A' (using pushforward/pullback rules) * * The one sticky point with this approach is the "A' = idx(x')" step: trying to go from real valued coordinates * back to indices. I don't want to rely on floating point tolerances. Additionally, PETSCDUALSPACELAGRANGE may * eventually support quasi-Lagrangian dofs, which could involve quadrature at multiple points, so the location "x(A)" * would be ambiguous. * * So each dof gets an integer value coordinate (nodeIdx in the structure below). The choice of integer coordinates * is somewhat arbitrary, as long as all of the relevant symmetries of the mesh point correspond to *permutations* of * the integer coordinates, which do not depend on numerical precision. * * So * * - DMPlexGetTransitiveClosure_Internal() tells me how an orientation turns into a permutation of the vertices of a * mesh point * - The permutation of the vertices, and the nodeIdx values assigned to them, tells what permutation in index space * is associated with the orientation * - I uses that permutation to get xi' = phi(xi(A)), the integer coordinate of the transformed dof * - I can without numerical issues compute A' = idx(xi') * * Here are some examples of how the process works * * - With a triangle: * * The triangle has the following integer coordinates for vertices, taken from the barycentric triangle * * closure order 2 * nodeIdx (0,0,1) * \ * + * |\ * | \ * | \ * | \ closure order 1 * | \ / nodeIdx (0,1,0) * +-----+ * \ * closure order 0 * nodeIdx (1,0,0) * * If I do DMPlexGetTransitiveClosure_Internal() with orientation 1, the vertices would appear * in the order (1, 2, 0) * * If I list the nodeIdx of each vertex in closure order for orientation 0 (0, 1, 2) and orientation 1 (1, 2, 0), I * see * * orientation 0 | orientation 1 * * [0] (1,0,0) [1] (0,1,0) * [1] (0,1,0) [2] (0,0,1) * [2] (0,0,1) [0] (1,0,0) * A B * * In other words, B is the result of a row permutation of A. But, there is also * a column permutation that accomplishes the same result, (2,0,1). * * So if a dof has nodeIdx coordinate (a,b,c), after the transformation its nodeIdx coordinate * is (c,a,b), and the transformed degree of freedom will be a linear combination of dofs * that originally had coordinate (c,a,b). * * - With a quadrilateral: * * The quadrilateral has the following integer coordinates for vertices, taken from concatenating barycentric * coordinates for two segments: * * closure order 3 closure order 2 * nodeIdx (1,0,0,1) nodeIdx (0,1,0,1) * \ / * +----+ * | | * | | * +----+ * / \ * closure order 0 closure order 1 * nodeIdx (1,0,1,0) nodeIdx (0,1,1,0) * * If I do DMPlexGetTransitiveClosure_Internal() with orientation 1, the vertices would appear * in the order (1, 2, 3, 0) * * If I list the nodeIdx of each vertex in closure order for orientation 0 (0, 1, 2, 3) and * orientation 1 (1, 2, 3, 0), I see * * orientation 0 | orientation 1 * * [0] (1,0,1,0) [1] (0,1,1,0) * [1] (0,1,1,0) [2] (0,1,0,1) * [2] (0,1,0,1) [3] (1,0,0,1) * [3] (1,0,0,1) [0] (1,0,1,0) * A B * * The column permutation that accomplishes the same result is (3,2,0,1). * * So if a dof has nodeIdx coordinate (a,b,c,d), after the transformation its nodeIdx coordinate * is (d,c,a,b), and the transformed degree of freedom will be a linear combination of dofs * that originally had coordinate (d,c,a,b). * * Previously PETSCDUALSPACELAGRANGE had hardcoded symmetries for the triangle and quadrilateral, * but this approach will work for any polytope, such as the wedge (triangular prism). */ struct _n_PetscLagNodeIndices { PetscInt refct; PetscInt nodeIdxDim; PetscInt nodeVecDim; PetscInt nNodes; PetscInt *nodeIdx; /* for each node an index of size nodeIdxDim */ PetscReal *nodeVec; /* for each node a vector of size nodeVecDim */ PetscInt *perm; /* if these are vertices, perm takes DMPlex point index to closure order; if these are nodes, perm lists nodes in index revlex order */ }; /* this is just here so I can access the values in tests/ex1.c outside the library */ PetscErrorCode PetscLagNodeIndicesGetData_Internal(PetscLagNodeIndices ni, PetscInt *nodeIdxDim, PetscInt *nodeVecDim, PetscInt *nNodes, const PetscInt *nodeIdx[], const PetscReal *nodeVec[]) { PetscFunctionBegin; *nodeIdxDim = ni->nodeIdxDim; *nodeVecDim = ni->nodeVecDim; *nNodes = ni->nNodes; *nodeIdx = ni->nodeIdx; *nodeVec = ni->nodeVec; PetscFunctionReturn(0); } static PetscErrorCode PetscLagNodeIndicesReference(PetscLagNodeIndices ni) { PetscFunctionBegin; if (ni) ni->refct++; PetscFunctionReturn(0); } static PetscErrorCode PetscLagNodeIndicesDestroy(PetscLagNodeIndices *ni) { PetscErrorCode ierr; PetscFunctionBegin; if (!(*ni)) PetscFunctionReturn(0); if (--(*ni)->refct > 0) { *ni = NULL; PetscFunctionReturn(0); } ierr = PetscFree((*ni)->nodeIdx);CHKERRQ(ierr); ierr = PetscFree((*ni)->nodeVec);CHKERRQ(ierr); ierr = PetscFree((*ni)->perm);CHKERRQ(ierr); ierr = PetscFree(*ni);CHKERRQ(ierr); *ni = NULL; PetscFunctionReturn(0); } /* The vertices are given nodeIdx coordinates (e.g. the corners of the barycentric triangle). Those coordinates are * in some other order, and to understand the effect of different symmetries, we need them to be in closure order. * * If sortIdx is PETSC_FALSE, the coordinates are already in revlex order, otherwise we must sort them * to that order before we do the real work of this function, which is * * - mark the vertices in closure order * - sort them in revlex order * - use the resulting permutation to list the vertex coordinates in closure order */ static PetscErrorCode PetscLagNodeIndicesComputeVertexOrder(DM dm, PetscLagNodeIndices ni, PetscBool sortIdx) { PetscInt v, w, vStart, vEnd, c, d; PetscInt nVerts; PetscInt closureSize = 0; PetscInt *closure = NULL; PetscInt *closureOrder; PetscInt *invClosureOrder; PetscInt *revlexOrder; PetscInt *newNodeIdx; PetscInt dim; Vec coordVec; const PetscScalar *coords; PetscErrorCode ierr; PetscFunctionBegin; ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); nVerts = vEnd - vStart; ierr = PetscMalloc1(nVerts, &closureOrder);CHKERRQ(ierr); ierr = PetscMalloc1(nVerts, &invClosureOrder);CHKERRQ(ierr); ierr = PetscMalloc1(nVerts, &revlexOrder);CHKERRQ(ierr); if (sortIdx) { /* bubble sort nodeIdx into revlex order */ PetscInt nodeIdxDim = ni->nodeIdxDim; PetscInt *idxOrder; ierr = PetscMalloc1(nVerts * nodeIdxDim, &newNodeIdx);CHKERRQ(ierr); ierr = PetscMalloc1(nVerts, &idxOrder);CHKERRQ(ierr); for (v = 0; v < nVerts; v++) idxOrder[v] = v; for (v = 0; v < nVerts; v++) { for (w = v + 1; w < nVerts; w++) { const PetscInt *iv = &(ni->nodeIdx[idxOrder[v] * nodeIdxDim]); const PetscInt *iw = &(ni->nodeIdx[idxOrder[w] * nodeIdxDim]); PetscInt diff = 0; for (d = nodeIdxDim - 1; d >= 0; d--) if ((diff = (iv[d] - iw[d]))) break; if (diff > 0) { PetscInt swap = idxOrder[v]; idxOrder[v] = idxOrder[w]; idxOrder[w] = swap; } } } for (v = 0; v < nVerts; v++) { for (d = 0; d < nodeIdxDim; d++) { newNodeIdx[v * ni->nodeIdxDim + d] = ni->nodeIdx[idxOrder[v] * nodeIdxDim + d]; } } ierr = PetscFree(ni->nodeIdx);CHKERRQ(ierr); ni->nodeIdx = newNodeIdx; newNodeIdx = NULL; ierr = PetscFree(idxOrder);CHKERRQ(ierr); } ierr = DMPlexGetTransitiveClosure(dm, 0, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); c = closureSize - nVerts; for (v = 0; v < nVerts; v++) closureOrder[v] = closure[2 * (c + v)] - vStart; for (v = 0; v < nVerts; v++) invClosureOrder[closureOrder[v]] = v; ierr = DMPlexRestoreTransitiveClosure(dm, 0, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); ierr = DMGetCoordinatesLocal(dm, &coordVec);CHKERRQ(ierr); ierr = VecGetArrayRead(coordVec, &coords);CHKERRQ(ierr); /* bubble sort closure vertices by coordinates in revlex order */ for (v = 0; v < nVerts; v++) revlexOrder[v] = v; for (v = 0; v < nVerts; v++) { for (w = v + 1; w < nVerts; w++) { const PetscScalar *cv = &coords[closureOrder[revlexOrder[v]] * dim]; const PetscScalar *cw = &coords[closureOrder[revlexOrder[w]] * dim]; PetscReal diff = 0; for (d = dim - 1; d >= 0; d--) if ((diff = PetscRealPart(cv[d] - cw[d])) != 0.) break; if (diff > 0.) { PetscInt swap = revlexOrder[v]; revlexOrder[v] = revlexOrder[w]; revlexOrder[w] = swap; } } } ierr = VecRestoreArrayRead(coordVec, &coords);CHKERRQ(ierr); ierr = PetscMalloc1(ni->nodeIdxDim * nVerts, &newNodeIdx);CHKERRQ(ierr); /* reorder nodeIdx to be in closure order */ for (v = 0; v < nVerts; v++) { for (d = 0; d < ni->nodeIdxDim; d++) { newNodeIdx[revlexOrder[v] * ni->nodeIdxDim + d] = ni->nodeIdx[v * ni->nodeIdxDim + d]; } } ierr = PetscFree(ni->nodeIdx);CHKERRQ(ierr); ni->nodeIdx = newNodeIdx; ni->perm = invClosureOrder; ierr = PetscFree(revlexOrder);CHKERRQ(ierr); ierr = PetscFree(closureOrder);CHKERRQ(ierr); PetscFunctionReturn(0); } /* the coordinates of the simplex vertices are the corners of the barycentric simplex. * When we stack them on top of each other in revlex order, they look like the identity matrix */ static PetscErrorCode PetscLagNodeIndicesCreateSimplexVertices(DM dm, PetscLagNodeIndices *nodeIndices) { PetscLagNodeIndices ni; PetscInt dim, d; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscNew(&ni);CHKERRQ(ierr); ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); ni->nodeIdxDim = dim + 1; ni->nodeVecDim = 0; ni->nNodes = dim + 1; ni->refct = 1; ierr = PetscCalloc1((dim + 1)*(dim + 1), &(ni->nodeIdx));CHKERRQ(ierr); for (d = 0; d < dim + 1; d++) ni->nodeIdx[d*(dim + 2)] = 1; ierr = PetscLagNodeIndicesComputeVertexOrder(dm, ni, PETSC_FALSE);CHKERRQ(ierr); *nodeIndices = ni; PetscFunctionReturn(0); } /* A polytope that is a tensor product of a facet and a segment. * We take whatever coordinate system was being used for the facet * and we concatenaty the barycentric coordinates for the vertices * at the end of the segment, (1,0) and (0,1), to get a coordinate * system for the tensor product element */ static PetscErrorCode PetscLagNodeIndicesCreateTensorVertices(DM dm, PetscLagNodeIndices facetni, PetscLagNodeIndices *nodeIndices) { PetscLagNodeIndices ni; PetscInt nodeIdxDim, subNodeIdxDim = facetni->nodeIdxDim; PetscInt nVerts, nSubVerts = facetni->nNodes; PetscInt dim, d, e, f, g; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscNew(&ni);CHKERRQ(ierr); ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); ni->nodeIdxDim = nodeIdxDim = subNodeIdxDim + 2; ni->nodeVecDim = 0; ni->nNodes = nVerts = 2 * nSubVerts; ni->refct = 1; ierr = PetscCalloc1(nodeIdxDim * nVerts, &(ni->nodeIdx));CHKERRQ(ierr); for (f = 0, d = 0; d < 2; d++) { for (e = 0; e < nSubVerts; e++, f++) { for (g = 0; g < subNodeIdxDim; g++) { ni->nodeIdx[f * nodeIdxDim + g] = facetni->nodeIdx[e * subNodeIdxDim + g]; } ni->nodeIdx[f * nodeIdxDim + subNodeIdxDim] = (1 - d); ni->nodeIdx[f * nodeIdxDim + subNodeIdxDim + 1] = d; } } ierr = PetscLagNodeIndicesComputeVertexOrder(dm, ni, PETSC_TRUE);CHKERRQ(ierr); *nodeIndices = ni; PetscFunctionReturn(0); } /* This helps us compute symmetries, and it also helps us compute coordinates for dofs that are being pushed * forward from a boundary mesh point. * * Input: * * dm - the target reference cell where we want new coordinates and dof directions to be valid * vert - the vertex coordinate system for the target reference cell * p - the point in the target reference cell that the dofs are coming from * vertp - the vertex coordinate system for p's reference cell * ornt - the resulting coordinates and dof vectors will be for p under this orientation * nodep - the node coordinates and dof vectors in p's reference cell * formDegree - the form degree that the dofs transform as * * Output: * * pfNodeIdx - the node coordinates for p's dofs, in the dm reference cell, from the ornt perspective * pfNodeVec - the node dof vectors for p's dofs, in the dm reference cell, from the ornt perspective */ static PetscErrorCode PetscLagNodeIndicesPushForward(DM dm, PetscLagNodeIndices vert, PetscInt p, PetscLagNodeIndices vertp, PetscLagNodeIndices nodep, PetscInt ornt, PetscInt formDegree, PetscInt pfNodeIdx[], PetscReal pfNodeVec[]) { PetscInt *closureVerts; PetscInt closureSize = 0; PetscInt *closure = NULL; PetscInt dim, pdim, c, i, j, k, n, v, vStart, vEnd; PetscInt nSubVert = vertp->nNodes; PetscInt nodeIdxDim = vert->nodeIdxDim; PetscInt subNodeIdxDim = vertp->nodeIdxDim; PetscInt nNodes = nodep->nNodes; const PetscInt *vertIdx = vert->nodeIdx; const PetscInt *subVertIdx = vertp->nodeIdx; const PetscInt *nodeIdx = nodep->nodeIdx; const PetscReal *nodeVec = nodep->nodeVec; PetscReal *J, *Jstar; PetscReal detJ; PetscInt depth, pdepth, Nk, pNk; Vec coordVec; PetscScalar *newCoords = NULL; const PetscScalar *oldCoords = NULL; PetscErrorCode ierr; PetscFunctionBegin; ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); ierr = DMGetCoordinatesLocal(dm, &coordVec);CHKERRQ(ierr); ierr = DMPlexGetPointDepth(dm, p, &pdepth);CHKERRQ(ierr); pdim = pdepth != depth ? pdepth != 0 ? pdepth : 0 : dim; ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); ierr = DMGetWorkArray(dm, nSubVert, MPIU_INT, &closureVerts);CHKERRQ(ierr); ierr = DMPlexGetTransitiveClosure_Internal(dm, p, ornt, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); c = closureSize - nSubVert; /* we want which cell closure indices the closure of this point corresponds to */ for (v = 0; v < nSubVert; v++) closureVerts[v] = vert->perm[closure[2 * (c + v)] - vStart]; ierr = DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); /* push forward indices */ for (i = 0; i < nodeIdxDim; i++) { /* for every component of the target index space */ /* check if this is a component that all vertices around this point have in common */ for (j = 1; j < nSubVert; j++) { if (vertIdx[closureVerts[j] * nodeIdxDim + i] != vertIdx[closureVerts[0] * nodeIdxDim + i]) break; } if (j == nSubVert) { /* all vertices have this component in common, directly copy to output */ PetscInt val = vertIdx[closureVerts[0] * nodeIdxDim + i]; for (n = 0; n < nNodes; n++) pfNodeIdx[n * nodeIdxDim + i] = val; } else { PetscInt subi = -1; /* there must be a component in vertp that looks the same */ for (k = 0; k < subNodeIdxDim; k++) { for (j = 0; j < nSubVert; j++) { if (vertIdx[closureVerts[j] * nodeIdxDim + i] != subVertIdx[j * subNodeIdxDim + k]) break; } if (j == nSubVert) { subi = k; break; } } if (subi < 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Did not find matching coordinate\n"); /* that component in the vertp system becomes component i in the vert system for each dof */ for (n = 0; n < nNodes; n++) pfNodeIdx[n * nodeIdxDim + i] = nodeIdx[n * subNodeIdxDim + subi]; } } /* push forward vectors */ ierr = DMGetWorkArray(dm, dim * dim, MPIU_REAL, &J);CHKERRQ(ierr); if (ornt != 0) { /* temporarily change the coordinate vector so DMPlexComputeCellGeometryAffineFEM gives us the Jacobian we want */ PetscInt closureSize2 = 0; PetscInt *closure2 = NULL; ierr = DMPlexGetTransitiveClosure_Internal(dm, p, 0, PETSC_TRUE, &closureSize2, &closure2);CHKERRQ(ierr); ierr = PetscMalloc1(dim * nSubVert, &newCoords);CHKERRQ(ierr); ierr = VecGetArrayRead(coordVec, &oldCoords);CHKERRQ(ierr); for (v = 0; v < nSubVert; v++) { PetscInt d; for (d = 0; d < dim; d++) { newCoords[(closure2[2 * (c + v)] - vStart) * dim + d] = oldCoords[closureVerts[v] * dim + d]; } } ierr = VecRestoreArrayRead(coordVec, &oldCoords);CHKERRQ(ierr); ierr = DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize2, &closure2);CHKERRQ(ierr); ierr = VecPlaceArray(coordVec, newCoords);CHKERRQ(ierr); } ierr = DMPlexComputeCellGeometryAffineFEM(dm, p, NULL, J, NULL, &detJ);CHKERRQ(ierr); if (ornt != 0) { ierr = VecResetArray(coordVec);CHKERRQ(ierr); ierr = PetscFree(newCoords);CHKERRQ(ierr); } ierr = DMRestoreWorkArray(dm, nSubVert, MPIU_INT, &closureVerts);CHKERRQ(ierr); /* compactify */ for (i = 0; i < dim; i++) for (j = 0; j < pdim; j++) J[i * pdim + j] = J[i * dim + j]; /* We have the Jacobian mapping the point's reference cell to this reference cell: * pulling back a function to the point and applying the dof is what we want, * so we get the pullback matrix and multiply the dof by that matrix on the right */ ierr = PetscDTBinomialInt(dim, PetscAbsInt(formDegree), &Nk);CHKERRQ(ierr); ierr = PetscDTBinomialInt(pdim, PetscAbsInt(formDegree), &pNk);CHKERRQ(ierr); ierr = DMGetWorkArray(dm, pNk * Nk, MPIU_REAL, &Jstar);CHKERRQ(ierr); ierr = PetscDTAltVPullbackMatrix(pdim, dim, J, formDegree, Jstar);CHKERRQ(ierr); for (n = 0; n < nNodes; n++) { for (i = 0; i < Nk; i++) { PetscReal val = 0.; for (j = 0; j < pNk; j++) val += nodeVec[n * pNk + j] * Jstar[j * pNk + i]; pfNodeVec[n * Nk + i] = val; } } ierr = DMRestoreWorkArray(dm, pNk * Nk, MPIU_REAL, &Jstar);CHKERRQ(ierr); ierr = DMRestoreWorkArray(dm, dim * dim, MPIU_REAL, &J);CHKERRQ(ierr); PetscFunctionReturn(0); } /* given to sets of nodes, take the tensor product, where the product of the dof indices is concatenation and the * product of the dof vectors is the wedge product */ static PetscErrorCode PetscLagNodeIndicesTensor(PetscLagNodeIndices tracei, PetscInt dimT, PetscInt kT, PetscLagNodeIndices fiberi, PetscInt dimF, PetscInt kF, PetscLagNodeIndices *nodeIndices) { PetscInt dim = dimT + dimF; PetscInt nodeIdxDim, nNodes; PetscInt formDegree = kT + kF; PetscInt Nk, NkT, NkF; PetscInt MkT, MkF; PetscLagNodeIndices ni; PetscInt i, j, l; PetscReal *projF, *projT; PetscReal *projFstar, *projTstar; PetscReal *workF, *workF2, *workT, *workT2, *work, *work2; PetscReal *wedgeMat; PetscReal sign; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDTBinomialInt(dim, PetscAbsInt(formDegree), &Nk);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dimT, PetscAbsInt(kT), &NkT);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dimF, PetscAbsInt(kF), &NkF);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dim, PetscAbsInt(kT), &MkT);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dim, PetscAbsInt(kF), &MkF);CHKERRQ(ierr); ierr = PetscNew(&ni);CHKERRQ(ierr); ni->nodeIdxDim = nodeIdxDim = tracei->nodeIdxDim + fiberi->nodeIdxDim; ni->nodeVecDim = Nk; ni->nNodes = nNodes = tracei->nNodes * fiberi->nNodes; ni->refct = 1; ierr = PetscMalloc1(nNodes * nodeIdxDim, &(ni->nodeIdx));CHKERRQ(ierr); /* first concatenate the indices */ for (l = 0, j = 0; j < fiberi->nNodes; j++) { for (i = 0; i < tracei->nNodes; i++, l++) { PetscInt m, n = 0; for (m = 0; m < tracei->nodeIdxDim; m++) ni->nodeIdx[l * nodeIdxDim + n++] = tracei->nodeIdx[i * tracei->nodeIdxDim + m]; for (m = 0; m < fiberi->nodeIdxDim; m++) ni->nodeIdx[l * nodeIdxDim + n++] = fiberi->nodeIdx[j * fiberi->nodeIdxDim + m]; } } /* now wedge together the push-forward vectors */ ierr = PetscMalloc1(nNodes * Nk, &(ni->nodeVec));CHKERRQ(ierr); ierr = PetscCalloc2(dimT*dim, &projT, dimF*dim, &projF);CHKERRQ(ierr); for (i = 0; i < dimT; i++) projT[i * (dim + 1)] = 1.; for (i = 0; i < dimF; i++) projF[i * (dim + dimT + 1) + dimT] = 1.; ierr = PetscMalloc2(MkT*NkT, &projTstar, MkF*NkF, &projFstar);CHKERRQ(ierr); ierr = PetscDTAltVPullbackMatrix(dim, dimT, projT, kT, projTstar);CHKERRQ(ierr); ierr = PetscDTAltVPullbackMatrix(dim, dimF, projF, kF, projFstar);CHKERRQ(ierr); ierr = PetscMalloc6(MkT, &workT, MkT, &workT2, MkF, &workF, MkF, &workF2, Nk, &work, Nk, &work2);CHKERRQ(ierr); ierr = PetscMalloc1(Nk * MkT, &wedgeMat);CHKERRQ(ierr); sign = (PetscAbsInt(kT * kF) & 1) ? -1. : 1.; for (l = 0, j = 0; j < fiberi->nNodes; j++) { PetscInt d, e; /* push forward fiber k-form */ for (d = 0; d < MkF; d++) { PetscReal val = 0.; for (e = 0; e < NkF; e++) val += projFstar[d * NkF + e] * fiberi->nodeVec[j * NkF + e]; workF[d] = val; } /* Hodge star to proper form if necessary */ if (kF < 0) { for (d = 0; d < MkF; d++) workF2[d] = workF[d]; ierr = PetscDTAltVStar(dim, PetscAbsInt(kF), 1, workF2, workF);CHKERRQ(ierr); } /* Compute the matrix that wedges this form with one of the trace k-form */ ierr = PetscDTAltVWedgeMatrix(dim, PetscAbsInt(kF), PetscAbsInt(kT), workF, wedgeMat);CHKERRQ(ierr); for (i = 0; i < tracei->nNodes; i++, l++) { /* push forward trace k-form */ for (d = 0; d < MkT; d++) { PetscReal val = 0.; for (e = 0; e < NkT; e++) val += projTstar[d * NkT + e] * tracei->nodeVec[i * NkT + e]; workT[d] = val; } /* Hodge star to proper form if necessary */ if (kT < 0) { for (d = 0; d < MkT; d++) workT2[d] = workT[d]; ierr = PetscDTAltVStar(dim, PetscAbsInt(kT), 1, workT2, workT);CHKERRQ(ierr); } /* compute the wedge product of the push-forward trace form and firer forms */ for (d = 0; d < Nk; d++) { PetscReal val = 0.; for (e = 0; e < MkT; e++) val += wedgeMat[d * MkT + e] * workT[e]; work[d] = val; } /* inverse Hodge star from proper form if necessary */ if (formDegree < 0) { for (d = 0; d < Nk; d++) work2[d] = work[d]; ierr = PetscDTAltVStar(dim, PetscAbsInt(formDegree), -1, work2, work);CHKERRQ(ierr); } /* insert into the array (adjusting for sign) */ for (d = 0; d < Nk; d++) ni->nodeVec[l * Nk + d] = sign * work[d]; } } ierr = PetscFree(wedgeMat);CHKERRQ(ierr); ierr = PetscFree6(workT, workT2, workF, workF2, work, work2);CHKERRQ(ierr); ierr = PetscFree2(projTstar, projFstar);CHKERRQ(ierr); ierr = PetscFree2(projT, projF);CHKERRQ(ierr); *nodeIndices = ni; PetscFunctionReturn(0); } /* simple union of two sets of nodes */ static PetscErrorCode PetscLagNodeIndicesMerge(PetscLagNodeIndices niA, PetscLagNodeIndices niB, PetscLagNodeIndices *nodeIndices) { PetscLagNodeIndices ni; PetscInt nodeIdxDim, nodeVecDim, nNodes; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscNew(&ni);CHKERRQ(ierr); ni->nodeIdxDim = nodeIdxDim = niA->nodeIdxDim; if (niB->nodeIdxDim != nodeIdxDim) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Cannot merge PetscLagNodeIndices with different nodeIdxDim"); ni->nodeVecDim = nodeVecDim = niA->nodeVecDim; if (niB->nodeVecDim != nodeVecDim) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Cannot merge PetscLagNodeIndices with different nodeVecDim"); ni->nNodes = nNodes = niA->nNodes + niB->nNodes; ni->refct = 1; ierr = PetscMalloc1(nNodes * nodeIdxDim, &(ni->nodeIdx));CHKERRQ(ierr); ierr = PetscMalloc1(nNodes * nodeVecDim, &(ni->nodeVec));CHKERRQ(ierr); ierr = PetscArraycpy(ni->nodeIdx, niA->nodeIdx, niA->nNodes * nodeIdxDim);CHKERRQ(ierr); ierr = PetscArraycpy(ni->nodeVec, niA->nodeVec, niA->nNodes * nodeVecDim);CHKERRQ(ierr); ierr = PetscArraycpy(&(ni->nodeIdx[niA->nNodes * nodeIdxDim]), niB->nodeIdx, niB->nNodes * nodeIdxDim);CHKERRQ(ierr); ierr = PetscArraycpy(&(ni->nodeVec[niA->nNodes * nodeVecDim]), niB->nodeVec, niB->nNodes * nodeVecDim);CHKERRQ(ierr); *nodeIndices = ni; PetscFunctionReturn(0); } #define PETSCTUPINTCOMPREVLEX(N) \ static int PetscTupIntCompRevlex_##N(const void *a, const void *b) \ { \ const PetscInt *A = (const PetscInt *) a; \ const PetscInt *B = (const PetscInt *) b; \ int i; \ PetscInt diff = 0; \ for (i = 0; i < N; i++) { \ diff = A[N - i] - B[N - i]; \ if (diff) break; \ } \ return (diff <= 0) ? (diff < 0) ? -1 : 0 : 1; \ } PETSCTUPINTCOMPREVLEX(3) PETSCTUPINTCOMPREVLEX(4) PETSCTUPINTCOMPREVLEX(5) PETSCTUPINTCOMPREVLEX(6) PETSCTUPINTCOMPREVLEX(7) static int PetscTupIntCompRevlex_N(const void *a, const void *b) { const PetscInt *A = (const PetscInt *) a; const PetscInt *B = (const PetscInt *) b; int i; int N = A[0]; PetscInt diff = 0; for (i = 0; i < N; i++) { diff = A[N - i] - B[N - i]; if (diff) break; } return (diff <= 0) ? (diff < 0) ? -1 : 0 : 1; } /* The nodes are not necessarily in revlex order wrt nodeIdx: get the permutation * that puts them in that order */ static PetscErrorCode PetscLagNodeIndicesGetPermutation(PetscLagNodeIndices ni, PetscInt *perm[]) { PetscErrorCode ierr; PetscFunctionBegin; if (!(ni->perm)) { PetscInt *sorter; PetscInt m = ni->nNodes; PetscInt nodeIdxDim = ni->nodeIdxDim; PetscInt i, j, k, l; PetscInt *prm; int (*comp) (const void *, const void *); ierr = PetscMalloc1((nodeIdxDim + 2) * m, &sorter);CHKERRQ(ierr); for (k = 0, l = 0, i = 0; i < m; i++) { sorter[k++] = nodeIdxDim + 1; sorter[k++] = i; for (j = 0; j < nodeIdxDim; j++) sorter[k++] = ni->nodeIdx[l++]; } switch (nodeIdxDim) { case 2: comp = PetscTupIntCompRevlex_3; break; case 3: comp = PetscTupIntCompRevlex_4; break; case 4: comp = PetscTupIntCompRevlex_5; break; case 5: comp = PetscTupIntCompRevlex_6; break; case 6: comp = PetscTupIntCompRevlex_7; break; default: comp = PetscTupIntCompRevlex_N; break; } qsort(sorter, m, (nodeIdxDim + 2) * sizeof(PetscInt), comp); ierr = PetscMalloc1(m, &prm);CHKERRQ(ierr); for (i = 0; i < m; i++) prm[i] = sorter[(nodeIdxDim + 2) * i + 1]; ni->perm = prm; ierr = PetscFree(sorter); } *perm = ni->perm; PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceDestroy_Lagrange(PetscDualSpace sp) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *) sp->data; PetscErrorCode ierr; PetscFunctionBegin; if (lag->symperms) { PetscInt **selfSyms = lag->symperms[0]; if (selfSyms) { PetscInt i, **allocated = &selfSyms[-lag->selfSymOff]; for (i = 0; i < lag->numSelfSym; i++) { ierr = PetscFree(allocated[i]);CHKERRQ(ierr); } ierr = PetscFree(allocated);CHKERRQ(ierr); } ierr = PetscFree(lag->symperms);CHKERRQ(ierr); } if (lag->symflips) { PetscScalar **selfSyms = lag->symflips[0]; if (selfSyms) { PetscInt i; PetscScalar **allocated = &selfSyms[-lag->selfSymOff]; for (i = 0; i < lag->numSelfSym; i++) { ierr = PetscFree(allocated[i]);CHKERRQ(ierr); } ierr = PetscFree(allocated);CHKERRQ(ierr); } ierr = PetscFree(lag->symflips);CHKERRQ(ierr); } ierr = Petsc1DNodeFamilyDestroy(&(lag->nodeFamily));CHKERRQ(ierr); ierr = PetscLagNodeIndicesDestroy(&(lag->vertIndices));CHKERRQ(ierr); ierr = PetscLagNodeIndicesDestroy(&(lag->intNodeIndices));CHKERRQ(ierr); ierr = PetscLagNodeIndicesDestroy(&(lag->allNodeIndices));CHKERRQ(ierr); ierr = PetscFree(lag);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeGetContinuity_C", NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeSetContinuity_C", NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeGetTensor_C", NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeSetTensor_C", NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeGetTrimmed_C", NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeSetTrimmed_C", NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeGetNodeType_C", NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeSetNodeType_C", NULL);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceLagrangeView_Ascii(PetscDualSpace sp, PetscViewer viewer) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *) sp->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscViewerASCIIPrintf(viewer, "%s %s%sLagrange dual space\n", lag->continuous ? "Continuous" : "Discontinuous", lag->tensorSpace ? "tensor " : "", lag->trimmed ? "trimmed " : "");CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceView_Lagrange(PetscDualSpace sp, PetscViewer viewer) { PetscBool iascii; PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); ierr = PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERASCII, &iascii);CHKERRQ(ierr); if (iascii) {ierr = PetscDualSpaceLagrangeView_Ascii(sp, viewer);CHKERRQ(ierr);} PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceSetFromOptions_Lagrange(PetscOptionItems *PetscOptionsObject,PetscDualSpace sp) { PetscBool continuous, tensor, trimmed, flg, flg2, flg3; PetscDTNodeType nodeType; PetscReal nodeExponent; PetscBool nodeEndpoints; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDualSpaceLagrangeGetContinuity(sp, &continuous);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeGetTensor(sp, &tensor);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeGetTrimmed(sp, &trimmed);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeGetNodeType(sp, &nodeType, &nodeEndpoints, &nodeExponent);CHKERRQ(ierr); if (nodeType == PETSCDTNODES_DEFAULT) nodeType = PETSCDTNODES_GAUSSJACOBI; ierr = PetscOptionsHead(PetscOptionsObject,"PetscDualSpace Lagrange Options");CHKERRQ(ierr); ierr = PetscOptionsBool("-petscdualspace_lagrange_continuity", "Flag for continuous element", "PetscDualSpaceLagrangeSetContinuity", continuous, &continuous, &flg);CHKERRQ(ierr); if (flg) {ierr = PetscDualSpaceLagrangeSetContinuity(sp, continuous);CHKERRQ(ierr);} ierr = PetscOptionsBool("-petscdualspace_lagrange_tensor", "Flag for tensor dual space", "PetscDualSpaceLagrangeSetTensor", tensor, &tensor, &flg);CHKERRQ(ierr); if (flg) {ierr = PetscDualSpaceLagrangeSetTensor(sp, tensor);CHKERRQ(ierr);} ierr = PetscOptionsBool("-petscdualspace_lagrange_trimmed", "Flag for trimmed dual space", "PetscDualSpaceLagrangeSetTrimmed", trimmed, &trimmed, &flg);CHKERRQ(ierr); if (flg) {ierr = PetscDualSpaceLagrangeSetTrimmed(sp, trimmed);CHKERRQ(ierr);} ierr = PetscOptionsEnum("-petscdualspace_lagrange_node_type", "Lagrange node location type", "PetscDualSpaceLagrangeSetNodeType", PetscDTNodeTypes, (PetscEnum)nodeType, (PetscEnum *)&nodeType, &flg);CHKERRQ(ierr); ierr = PetscOptionsBool("-petscdualspace_lagrange_node_endpoints", "Flag for nodes that include endpoints", "PetscDualSpaceLagrangeSetNodeType", nodeEndpoints, &nodeEndpoints, &flg2);CHKERRQ(ierr); flg3 = PETSC_FALSE; if (nodeType == PETSCDTNODES_GAUSSJACOBI) { ierr = PetscOptionsReal("-petscdualspace_lagrange_node_exponent", "Gauss-Jacobi weight function exponent", "PetscDualSpaceLagrangeSetNodeType", nodeExponent, &nodeExponent, &flg3);CHKERRQ(ierr); } if (flg || flg2 || flg3) {ierr = PetscDualSpaceLagrangeSetNodeType(sp, nodeType, nodeEndpoints, nodeExponent);CHKERRQ(ierr);} ierr = PetscOptionsTail();CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceDuplicate_Lagrange(PetscDualSpace sp, PetscDualSpace spNew) { PetscBool cont, tensor, trimmed, boundary; PetscDTNodeType nodeType; PetscReal exponent; PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *) sp->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDualSpaceLagrangeGetContinuity(sp, &cont);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeSetContinuity(spNew, cont);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeGetTensor(sp, &tensor);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeSetTensor(spNew, tensor);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeGetTrimmed(sp, &trimmed);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeSetTrimmed(spNew, trimmed);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeGetNodeType(sp, &nodeType, &boundary, &exponent);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeSetNodeType(spNew, nodeType, boundary, exponent);CHKERRQ(ierr); if (lag->nodeFamily) { PetscDualSpace_Lag *lagnew = (PetscDualSpace_Lag *) spNew->data; ierr = Petsc1DNodeFamilyReference(lag->nodeFamily);CHKERRQ(ierr); lagnew->nodeFamily = lag->nodeFamily; } PetscFunctionReturn(0); } /* for making tensor product spaces: take a dual space and product a segment space that has all the same * specifications (trimmed, continuous, order, node set), except for the form degree */ static PetscErrorCode PetscDualSpaceCreateEdgeSubspace_Lagrange(PetscDualSpace sp, PetscInt order, PetscInt k, PetscInt Nc, PetscBool interiorOnly, PetscDualSpace *bdsp) { DM K; PetscDualSpace_Lag *newlag; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDualSpaceDuplicate(sp,bdsp);CHKERRQ(ierr); ierr = PetscDualSpaceSetFormDegree(*bdsp, k);CHKERRQ(ierr); ierr = PetscDualSpaceCreateReferenceCell(*bdsp, 1, PETSC_TRUE, &K);CHKERRQ(ierr); ierr = PetscDualSpaceSetDM(*bdsp, K);CHKERRQ(ierr); ierr = DMDestroy(&K);CHKERRQ(ierr); ierr = PetscDualSpaceSetOrder(*bdsp, order);CHKERRQ(ierr); ierr = PetscDualSpaceSetNumComponents(*bdsp, Nc);CHKERRQ(ierr); newlag = (PetscDualSpace_Lag *) (*bdsp)->data; newlag->interiorOnly = interiorOnly; ierr = PetscDualSpaceSetUp(*bdsp);CHKERRQ(ierr); PetscFunctionReturn(0); } /* just the points, weights aren't handled */ static PetscErrorCode PetscQuadratureCreateTensor(PetscQuadrature trace, PetscQuadrature fiber, PetscQuadrature *product) { PetscInt dimTrace, dimFiber; PetscInt numPointsTrace, numPointsFiber; PetscInt dim, numPoints; const PetscReal *pointsTrace; const PetscReal *pointsFiber; PetscReal *points; PetscInt i, j, k, p; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscQuadratureGetData(trace, &dimTrace, NULL, &numPointsTrace, &pointsTrace, NULL);CHKERRQ(ierr); ierr = PetscQuadratureGetData(fiber, &dimFiber, NULL, &numPointsFiber, &pointsFiber, NULL);CHKERRQ(ierr); dim = dimTrace + dimFiber; numPoints = numPointsFiber * numPointsTrace; ierr = PetscMalloc1(numPoints * dim, &points);CHKERRQ(ierr); for (p = 0, j = 0; j < numPointsFiber; j++) { for (i = 0; i < numPointsTrace; i++, p++) { for (k = 0; k < dimTrace; k++) points[p * dim + k] = pointsTrace[i * dimTrace + k]; for (k = 0; k < dimFiber; k++) points[p * dim + dimTrace + k] = pointsFiber[j * dimFiber + k]; } } ierr = PetscQuadratureCreate(PETSC_COMM_SELF, product);CHKERRQ(ierr); ierr = PetscQuadratureSetData(*product, dim, 0, numPoints, points, NULL);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Kronecker tensor product where matrix is considered a matrix of k-forms, so that * the entries in the product matrix are wedge products of the entries in the original matrices */ static PetscErrorCode MatTensorAltV(Mat trace, Mat fiber, PetscInt dimTrace, PetscInt kTrace, PetscInt dimFiber, PetscInt kFiber, Mat *product) { PetscInt mTrace, nTrace, mFiber, nFiber, m, n, k, i, j, l; PetscInt dim, NkTrace, NkFiber, Nk; PetscInt dT, dF; PetscInt *nnzTrace, *nnzFiber, *nnz; PetscInt iT, iF, jT, jF, il, jl; PetscReal *workT, *workT2, *workF, *workF2, *work, *workstar; PetscReal *projT, *projF; PetscReal *projTstar, *projFstar; PetscReal *wedgeMat; PetscReal sign; PetscScalar *workS; Mat prod; /* this produces dof groups that look like the identity */ PetscErrorCode ierr; PetscFunctionBegin; ierr = MatGetSize(trace, &mTrace, &nTrace);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dimTrace, PetscAbsInt(kTrace), &NkTrace);CHKERRQ(ierr); if (nTrace % NkTrace) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "point value space of trace matrix is not a multiple of k-form size"); ierr = MatGetSize(fiber, &mFiber, &nFiber);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dimFiber, PetscAbsInt(kFiber), &NkFiber);CHKERRQ(ierr); if (nFiber % NkFiber) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "point value space of fiber matrix is not a multiple of k-form size"); ierr = PetscMalloc2(mTrace, &nnzTrace, mFiber, &nnzFiber);CHKERRQ(ierr); for (i = 0; i < mTrace; i++) { ierr = MatGetRow(trace, i, &(nnzTrace[i]), NULL, NULL);CHKERRQ(ierr); if (nnzTrace[i] % NkTrace) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "nonzeros in trace matrix are not in k-form size blocks"); } for (i = 0; i < mFiber; i++) { ierr = MatGetRow(fiber, i, &(nnzFiber[i]), NULL, NULL);CHKERRQ(ierr); if (nnzFiber[i] % NkFiber) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "nonzeros in fiber matrix are not in k-form size blocks"); } dim = dimTrace + dimFiber; k = kFiber + kTrace; ierr = PetscDTBinomialInt(dim, PetscAbsInt(k), &Nk);CHKERRQ(ierr); m = mTrace * mFiber; ierr = PetscMalloc1(m, &nnz);CHKERRQ(ierr); for (l = 0, j = 0; j < mFiber; j++) for (i = 0; i < mTrace; i++, l++) nnz[l] = (nnzTrace[i] / NkTrace) * (nnzFiber[j] / NkFiber) * Nk; n = (nTrace / NkTrace) * (nFiber / NkFiber) * Nk; ierr = MatCreateSeqAIJ(PETSC_COMM_SELF, m, n, 0, nnz, &prod);CHKERRQ(ierr); ierr = PetscFree(nnz);CHKERRQ(ierr); ierr = PetscFree2(nnzTrace,nnzFiber);CHKERRQ(ierr); /* reasoning about which points each dof needs depends on having zeros computed at points preserved */ ierr = MatSetOption(prod, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE);CHKERRQ(ierr); /* compute pullbacks */ ierr = PetscDTBinomialInt(dim, PetscAbsInt(kTrace), &dT);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dim, PetscAbsInt(kFiber), &dF);CHKERRQ(ierr); ierr = PetscMalloc4(dimTrace * dim, &projT, dimFiber * dim, &projF, dT * NkTrace, &projTstar, dF * NkFiber, &projFstar);CHKERRQ(ierr); ierr = PetscArrayzero(projT, dimTrace * dim);CHKERRQ(ierr); for (i = 0; i < dimTrace; i++) projT[i * (dim + 1)] = 1.; ierr = PetscArrayzero(projF, dimFiber * dim);CHKERRQ(ierr); for (i = 0; i < dimFiber; i++) projF[i * (dim + 1) + dimTrace] = 1.; ierr = PetscDTAltVPullbackMatrix(dim, dimTrace, projT, kTrace, projTstar);CHKERRQ(ierr); ierr = PetscDTAltVPullbackMatrix(dim, dimFiber, projF, kFiber, projFstar);CHKERRQ(ierr); ierr = PetscMalloc5(dT, &workT, dF, &workF, Nk, &work, Nk, &workstar, Nk, &workS);CHKERRQ(ierr); ierr = PetscMalloc2(dT, &workT2, dF, &workF2);CHKERRQ(ierr); ierr = PetscMalloc1(Nk * dT, &wedgeMat);CHKERRQ(ierr); sign = (PetscAbsInt(kTrace * kFiber) & 1) ? -1. : 1.; for (i = 0, iF = 0; iF < mFiber; iF++) { PetscInt ncolsF, nformsF; const PetscInt *colsF; const PetscScalar *valsF; ierr = MatGetRow(fiber, iF, &ncolsF, &colsF, &valsF);CHKERRQ(ierr); nformsF = ncolsF / NkFiber; for (iT = 0; iT < mTrace; iT++, i++) { PetscInt ncolsT, nformsT; const PetscInt *colsT; const PetscScalar *valsT; ierr = MatGetRow(trace, iT, &ncolsT, &colsT, &valsT);CHKERRQ(ierr); nformsT = ncolsT / NkTrace; for (j = 0, jF = 0; jF < nformsF; jF++) { PetscInt colF = colsF[jF * NkFiber] / NkFiber; for (il = 0; il < dF; il++) { PetscReal val = 0.; for (jl = 0; jl < NkFiber; jl++) val += projFstar[il * NkFiber + jl] * PetscRealPart(valsF[jF * NkFiber + jl]); workF[il] = val; } if (kFiber < 0) { for (il = 0; il < dF; il++) workF2[il] = workF[il]; ierr = PetscDTAltVStar(dim, PetscAbsInt(kFiber), 1, workF2, workF);CHKERRQ(ierr); } ierr = PetscDTAltVWedgeMatrix(dim, PetscAbsInt(kFiber), PetscAbsInt(kTrace), workF, wedgeMat);CHKERRQ(ierr); for (jT = 0; jT < nformsT; jT++, j++) { PetscInt colT = colsT[jT * NkTrace] / NkTrace; PetscInt col = colF * (nTrace / NkTrace) + colT; const PetscScalar *vals; for (il = 0; il < dT; il++) { PetscReal val = 0.; for (jl = 0; jl < NkTrace; jl++) val += projTstar[il * NkTrace + jl] * PetscRealPart(valsT[jT * NkTrace + jl]); workT[il] = val; } if (kTrace < 0) { for (il = 0; il < dT; il++) workT2[il] = workT[il]; ierr = PetscDTAltVStar(dim, PetscAbsInt(kTrace), 1, workT2, workT);CHKERRQ(ierr); } for (il = 0; il < Nk; il++) { PetscReal val = 0.; for (jl = 0; jl < dT; jl++) val += sign * wedgeMat[il * dT + jl] * workT[jl]; work[il] = val; } if (k < 0) { ierr = PetscDTAltVStar(dim, PetscAbsInt(k), -1, work, workstar);CHKERRQ(ierr); #if defined(PETSC_USE_COMPLEX) for (l = 0; l < Nk; l++) workS[l] = workstar[l]; vals = &workS[0]; #else vals = &workstar[0]; #endif } else { #if defined(PETSC_USE_COMPLEX) for (l = 0; l < Nk; l++) workS[l] = work[l]; vals = &workS[0]; #else vals = &work[0]; #endif } for (l = 0; l < Nk; l++) { ierr = MatSetValue(prod, i, col * Nk + l, vals[l], INSERT_VALUES);CHKERRQ(ierr); } /* Nk */ } /* jT */ } /* jF */ ierr = MatRestoreRow(trace, iT, &ncolsT, &colsT, &valsT);CHKERRQ(ierr); } /* iT */ ierr = MatRestoreRow(fiber, iF, &ncolsF, &colsF, &valsF);CHKERRQ(ierr); } /* iF */ ierr = PetscFree(wedgeMat);CHKERRQ(ierr); ierr = PetscFree4(projT, projF, projTstar, projFstar);CHKERRQ(ierr); ierr = PetscFree2(workT2, workF2);CHKERRQ(ierr); ierr = PetscFree5(workT, workF, work, workstar, workS);CHKERRQ(ierr); ierr = MatAssemblyBegin(prod, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(prod, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); *product = prod; PetscFunctionReturn(0); } /* Union of quadrature points, with an attempt to identify commont points in the two sets */ static PetscErrorCode PetscQuadraturePointsMerge(PetscQuadrature quadA, PetscQuadrature quadB, PetscQuadrature *quadJoint, PetscInt *aToJoint[], PetscInt *bToJoint[]) { PetscInt dimA, dimB; PetscInt nA, nB, nJoint, i, j, d; const PetscReal *pointsA; const PetscReal *pointsB; PetscReal *pointsJoint; PetscInt *aToJ, *bToJ; PetscQuadrature qJ; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscQuadratureGetData(quadA, &dimA, NULL, &nA, &pointsA, NULL);CHKERRQ(ierr); ierr = PetscQuadratureGetData(quadB, &dimB, NULL, &nB, &pointsB, NULL);CHKERRQ(ierr); if (dimA != dimB) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Quadrature points must be in the same dimension"); nJoint = nA; ierr = PetscMalloc1(nA, &aToJ);CHKERRQ(ierr); for (i = 0; i < nA; i++) aToJ[i] = i; ierr = PetscMalloc1(nB, &bToJ);CHKERRQ(ierr); for (i = 0; i < nB; i++) { for (j = 0; j < nA; j++) { bToJ[i] = -1; for (d = 0; d < dimA; d++) if (PetscAbsReal(pointsB[i * dimA + d] - pointsA[j * dimA + d]) > PETSC_SMALL) break; if (d == dimA) { bToJ[i] = j; break; } } if (bToJ[i] == -1) { bToJ[i] = nJoint++; } } *aToJoint = aToJ; *bToJoint = bToJ; ierr = PetscMalloc1(nJoint * dimA, &pointsJoint);CHKERRQ(ierr); ierr = PetscArraycpy(pointsJoint, pointsA, nA * dimA);CHKERRQ(ierr); for (i = 0; i < nB; i++) { if (bToJ[i] >= nA) { for (d = 0; d < dimA; d++) pointsJoint[bToJ[i] * dimA + d] = pointsB[i * dimA + d]; } } ierr = PetscQuadratureCreate(PETSC_COMM_SELF, &qJ);CHKERRQ(ierr); ierr = PetscQuadratureSetData(qJ, dimA, 0, nJoint, pointsJoint, NULL);CHKERRQ(ierr); *quadJoint = qJ; PetscFunctionReturn(0); } /* Matrices matA and matB are both quadrature -> dof matrices: produce a matrix that is joint quadrature -> union of * dofs, where the joint quadrature was produced by PetscQuadraturePointsMerge */ static PetscErrorCode MatricesMerge(Mat matA, Mat matB, PetscInt dim, PetscInt k, PetscInt numMerged, const PetscInt aToMerged[], const PetscInt bToMerged[], Mat *matMerged) { PetscInt m, n, mA, nA, mB, nB, Nk, i, j, l; Mat M; PetscInt *nnz; PetscInt maxnnz; PetscInt *work; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDTBinomialInt(dim, PetscAbsInt(k), &Nk);CHKERRQ(ierr); ierr = MatGetSize(matA, &mA, &nA);CHKERRQ(ierr); if (nA % Nk) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "matA column space not a multiple of k-form size"); ierr = MatGetSize(matB, &mB, &nB);CHKERRQ(ierr); if (nB % Nk) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "matB column space not a multiple of k-form size"); m = mA + mB; n = numMerged * Nk; ierr = PetscMalloc1(m, &nnz);CHKERRQ(ierr); maxnnz = 0; for (i = 0; i < mA; i++) { ierr = MatGetRow(matA, i, &(nnz[i]), NULL, NULL);CHKERRQ(ierr); if (nnz[i] % Nk) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "nonzeros in matA are not in k-form size blocks"); maxnnz = PetscMax(maxnnz, nnz[i]); } for (i = 0; i < mB; i++) { ierr = MatGetRow(matB, i, &(nnz[i+mA]), NULL, NULL);CHKERRQ(ierr); if (nnz[i+mA] % Nk) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "nonzeros in matB are not in k-form size blocks"); maxnnz = PetscMax(maxnnz, nnz[i+mA]); } ierr = MatCreateSeqAIJ(PETSC_COMM_SELF, m, n, 0, nnz, &M);CHKERRQ(ierr); ierr = PetscFree(nnz);CHKERRQ(ierr); /* reasoning about which points each dof needs depends on having zeros computed at points preserved */ ierr = MatSetOption(M, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE);CHKERRQ(ierr); ierr = PetscMalloc1(maxnnz, &work);CHKERRQ(ierr); for (i = 0; i < mA; i++) { const PetscInt *cols; const PetscScalar *vals; PetscInt nCols; ierr = MatGetRow(matA, i, &nCols, &cols, &vals);CHKERRQ(ierr); for (j = 0; j < nCols / Nk; j++) { PetscInt newCol = aToMerged[cols[j * Nk] / Nk]; for (l = 0; l < Nk; l++) work[j * Nk + l] = newCol * Nk + l; } ierr = MatSetValuesBlocked(M, 1, &i, nCols, work, vals, INSERT_VALUES);CHKERRQ(ierr); ierr = MatRestoreRow(matA, i, &nCols, &cols, &vals);CHKERRQ(ierr); } for (i = 0; i < mB; i++) { const PetscInt *cols; const PetscScalar *vals; PetscInt row = i + mA; PetscInt nCols; ierr = MatGetRow(matB, i, &nCols, &cols, &vals);CHKERRQ(ierr); for (j = 0; j < nCols / Nk; j++) { PetscInt newCol = bToMerged[cols[j * Nk] / Nk]; for (l = 0; l < Nk; l++) work[j * Nk + l] = newCol * Nk + l; } ierr = MatSetValuesBlocked(M, 1, &row, nCols, work, vals, INSERT_VALUES);CHKERRQ(ierr); ierr = MatRestoreRow(matB, i, &nCols, &cols, &vals);CHKERRQ(ierr); } ierr = PetscFree(work);CHKERRQ(ierr); ierr = MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); *matMerged = M; PetscFunctionReturn(0); } /* Take a dual space and product a segment space that has all the same specifications (trimmed, continuous, order, * node set), except for the form degree. For computing boundary dofs and for making tensor product spaces */ static PetscErrorCode PetscDualSpaceCreateFacetSubspace_Lagrange(PetscDualSpace sp, DM K, PetscInt f, PetscInt k, PetscInt Ncopies, PetscBool interiorOnly, PetscDualSpace *bdsp) { PetscInt Nknew, Ncnew; PetscInt dim, pointDim = -1; PetscInt depth; DM dm; PetscDualSpace_Lag *newlag; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDualSpaceGetDM(sp,&dm);CHKERRQ(ierr); ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); ierr = DMPlexGetDepth(dm,&depth);CHKERRQ(ierr); ierr = PetscDualSpaceDuplicate(sp,bdsp);CHKERRQ(ierr); ierr = PetscDualSpaceSetFormDegree(*bdsp,k);CHKERRQ(ierr); if (!K) { PetscBool isSimplex; if (depth == dim) { PetscInt coneSize; pointDim = dim - 1; ierr = DMPlexGetConeSize(dm,f,&coneSize);CHKERRQ(ierr); isSimplex = (PetscBool) (coneSize == dim); ierr = PetscDualSpaceCreateReferenceCell(*bdsp, dim-1, isSimplex, &K);CHKERRQ(ierr); } else if (depth == 1) { pointDim = 0; ierr = PetscDualSpaceCreateReferenceCell(*bdsp, 0, PETSC_TRUE, &K);CHKERRQ(ierr); } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unsupported interpolation state of reference element"); } else { ierr = PetscObjectReference((PetscObject)K);CHKERRQ(ierr); ierr = DMGetDimension(K, &pointDim);CHKERRQ(ierr); } ierr = PetscDualSpaceSetDM(*bdsp, K);CHKERRQ(ierr); ierr = DMDestroy(&K);CHKERRQ(ierr); ierr = PetscDTBinomialInt(pointDim, PetscAbsInt(k), &Nknew);CHKERRQ(ierr); Ncnew = Nknew * Ncopies; ierr = PetscDualSpaceSetNumComponents(*bdsp, Ncnew);CHKERRQ(ierr); newlag = (PetscDualSpace_Lag *) (*bdsp)->data; newlag->interiorOnly = interiorOnly; ierr = PetscDualSpaceSetUp(*bdsp);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Construct simplex nodes from a nodefamily, add Nk dof vectors of length Nk at each node. * Return the (quadrature, matrix) form of the dofs and the nodeIndices form as well. * * Sometimes we want a set of nodes to be contained in the interior of the element, * even when the node scheme puts nodes on the boundaries. numNodeSkip tells * the routine how many "layers" of nodes need to be skipped. * */ static PetscErrorCode PetscDualSpaceLagrangeCreateSimplexNodeMat(Petsc1DNodeFamily nodeFamily, PetscInt dim, PetscInt sum, PetscInt Nk, PetscInt numNodeSkip, PetscQuadrature *iNodes, Mat *iMat, PetscLagNodeIndices *nodeIndices) { PetscReal *extraNodeCoords, *nodeCoords; PetscInt nNodes, nExtraNodes; PetscInt i, j, k, extraSum = sum + numNodeSkip * (1 + dim); PetscQuadrature intNodes; Mat intMat; PetscLagNodeIndices ni; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDTBinomialInt(dim + sum, dim, &nNodes);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dim + extraSum, dim, &nExtraNodes);CHKERRQ(ierr); ierr = PetscMalloc1(dim * nExtraNodes, &extraNodeCoords);CHKERRQ(ierr); ierr = PetscNew(&ni);CHKERRQ(ierr); ni->nodeIdxDim = dim + 1; ni->nodeVecDim = Nk; ni->nNodes = nNodes * Nk; ni->refct = 1; ierr = PetscMalloc1(nNodes * Nk * (dim + 1), &(ni->nodeIdx));CHKERRQ(ierr); ierr = PetscMalloc1(nNodes * Nk * Nk, &(ni->nodeVec));CHKERRQ(ierr); for (i = 0; i < nNodes; i++) for (j = 0; j < Nk; j++) for (k = 0; k < Nk; k++) ni->nodeVec[(i * Nk + j) * Nk + k] = (j == k) ? 1. : 0.; ierr = Petsc1DNodeFamilyComputeSimplexNodes(nodeFamily, dim, extraSum, extraNodeCoords);CHKERRQ(ierr); if (numNodeSkip) { PetscInt k; PetscInt *tup; ierr = PetscMalloc1(dim * nNodes, &nodeCoords);CHKERRQ(ierr); ierr = PetscMalloc1(dim + 1, &tup);CHKERRQ(ierr); for (k = 0; k < nNodes; k++) { PetscInt j, c; PetscInt index; ierr = PetscDTIndexToBary(dim + 1, sum, k, tup);CHKERRQ(ierr); for (j = 0; j < dim + 1; j++) tup[j] += numNodeSkip; for (c = 0; c < Nk; c++) { for (j = 0; j < dim + 1; j++) { ni->nodeIdx[(k * Nk + c) * (dim + 1) + j] = tup[j] + 1; } } ierr = PetscDTBaryToIndex(dim + 1, extraSum, tup, &index);CHKERRQ(ierr); for (j = 0; j < dim; j++) nodeCoords[k * dim + j] = extraNodeCoords[index * dim + j]; } ierr = PetscFree(tup);CHKERRQ(ierr); ierr = PetscFree(extraNodeCoords);CHKERRQ(ierr); } else { PetscInt k; PetscInt *tup; nodeCoords = extraNodeCoords; ierr = PetscMalloc1(dim + 1, &tup);CHKERRQ(ierr); for (k = 0; k < nNodes; k++) { PetscInt j, c; ierr = PetscDTIndexToBary(dim + 1, sum, k, tup);CHKERRQ(ierr); for (c = 0; c < Nk; c++) { for (j = 0; j < dim + 1; j++) { /* barycentric indices can have zeros, but we don't want to push forward zeros because it makes it harder to * determine which nodes correspond to which under symmetries, so we increase by 1. This is fine * because the nodeIdx coordinates don't have any meaning other than helping to identify symmetries */ ni->nodeIdx[(k * Nk + c) * (dim + 1) + j] = tup[j] + 1; } } } ierr = PetscFree(tup);CHKERRQ(ierr); } ierr = PetscQuadratureCreate(PETSC_COMM_SELF, &intNodes);CHKERRQ(ierr); ierr = PetscQuadratureSetData(intNodes, dim, 0, nNodes, nodeCoords, NULL);CHKERRQ(ierr); ierr = MatCreateSeqAIJ(PETSC_COMM_SELF, nNodes * Nk, nNodes * Nk, Nk, NULL, &intMat);CHKERRQ(ierr); ierr = MatSetOption(intMat,MAT_IGNORE_ZERO_ENTRIES,PETSC_FALSE);CHKERRQ(ierr); for (j = 0; j < nNodes * Nk; j++) { PetscInt rem = j % Nk; PetscInt a, aprev = j - rem; PetscInt anext = aprev + Nk; for (a = aprev; a < anext; a++) { ierr = MatSetValue(intMat, j, a, (a == j) ? 1. : 0., INSERT_VALUES);CHKERRQ(ierr); } } ierr = MatAssemblyBegin(intMat, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(intMat, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); *iNodes = intNodes; *iMat = intMat; *nodeIndices = ni; PetscFunctionReturn(0); } /* once the nodeIndices have been created for the interior of the reference cell, and for all of the boundary cells, * push forward the boudary dofs and concatenate them into the full node indices for the dual space */ static PetscErrorCode PetscDualSpaceLagrangeCreateAllNodeIdx(PetscDualSpace sp) { DM dm; PetscInt dim, nDofs; PetscSection section; PetscInt pStart, pEnd, p; PetscInt formDegree, Nk; PetscInt nodeIdxDim, spintdim; PetscDualSpace_Lag *lag; PetscLagNodeIndices ni, verti; PetscErrorCode ierr; PetscFunctionBegin; lag = (PetscDualSpace_Lag *) sp->data; verti = lag->vertIndices; ierr = PetscDualSpaceGetDM(sp, &dm);CHKERRQ(ierr); ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); ierr = PetscDualSpaceGetFormDegree(sp, &formDegree);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dim, PetscAbsInt(formDegree), &Nk);CHKERRQ(ierr); ierr = PetscDualSpaceGetSection(sp, §ion);CHKERRQ(ierr); ierr = PetscSectionGetStorageSize(section, &nDofs);CHKERRQ(ierr); ierr = PetscNew(&ni);CHKERRQ(ierr); ni->nodeIdxDim = nodeIdxDim = verti->nodeIdxDim; ni->nodeVecDim = Nk; ni->nNodes = nDofs; ni->refct = 1; ierr = PetscMalloc1(nodeIdxDim * nDofs, &(ni->nodeIdx));CHKERRQ(ierr); ierr = PetscMalloc1(Nk * nDofs, &(ni->nodeVec));CHKERRQ(ierr); ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); ierr = PetscSectionGetDof(section, 0, &spintdim);CHKERRQ(ierr); if (spintdim) { ierr = PetscArraycpy(ni->nodeIdx, lag->intNodeIndices->nodeIdx, spintdim * nodeIdxDim);CHKERRQ(ierr); ierr = PetscArraycpy(ni->nodeVec, lag->intNodeIndices->nodeVec, spintdim * Nk);CHKERRQ(ierr); } for (p = pStart + 1; p < pEnd; p++) { PetscDualSpace psp = sp->pointSpaces[p]; PetscDualSpace_Lag *plag; PetscInt dof, off; ierr = PetscSectionGetDof(section, p, &dof);CHKERRQ(ierr); if (!dof) continue; plag = (PetscDualSpace_Lag *) psp->data; ierr = PetscSectionGetOffset(section, p, &off);CHKERRQ(ierr); ierr = PetscLagNodeIndicesPushForward(dm, verti, p, plag->vertIndices, plag->intNodeIndices, 0, formDegree, &(ni->nodeIdx[off * nodeIdxDim]), &(ni->nodeVec[off * Nk]));CHKERRQ(ierr); } lag->allNodeIndices = ni; PetscFunctionReturn(0); } /* once the (quadrature, Matrix) forms of the dofs have been created for the interior of the * reference cell and for the boundary cells, jk * push forward the boundary data and concatenate them into the full (quadrature, matrix) data * for the dual space */ static PetscErrorCode PetscDualSpaceCreateAllDataFromInteriorData(PetscDualSpace sp) { DM dm; PetscSection section; PetscInt pStart, pEnd, p, k, Nk, dim, Nc; PetscInt nNodes; PetscInt countNodes; Mat allMat; PetscQuadrature allNodes; PetscInt nDofs; PetscInt maxNzforms, j; PetscScalar *work; PetscReal *L, *J, *Jinv, *v0, *pv0; PetscInt *iwork; PetscReal *nodes; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDualSpaceGetDM(sp, &dm);CHKERRQ(ierr); ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); ierr = PetscDualSpaceGetSection(sp, §ion);CHKERRQ(ierr); ierr = PetscSectionGetStorageSize(section, &nDofs);CHKERRQ(ierr); ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); ierr = PetscDualSpaceGetFormDegree(sp, &k);CHKERRQ(ierr); ierr = PetscDualSpaceGetNumComponents(sp, &Nc);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dim, PetscAbsInt(k), &Nk);CHKERRQ(ierr); for (p = pStart, nNodes = 0, maxNzforms = 0; p < pEnd; p++) { PetscDualSpace psp; DM pdm; PetscInt pdim, pNk; PetscQuadrature intNodes; Mat intMat; ierr = PetscDualSpaceGetPointSubspace(sp, p, &psp);CHKERRQ(ierr); if (!psp) continue; ierr = PetscDualSpaceGetDM(psp, &pdm);CHKERRQ(ierr); ierr = DMGetDimension(pdm, &pdim);CHKERRQ(ierr); if (pdim < PetscAbsInt(k)) continue; ierr = PetscDTBinomialInt(pdim, PetscAbsInt(k), &pNk);CHKERRQ(ierr); ierr = PetscDualSpaceGetInteriorData(psp, &intNodes, &intMat);CHKERRQ(ierr); if (intNodes) { PetscInt nNodesp; ierr = PetscQuadratureGetData(intNodes, NULL, NULL, &nNodesp, NULL, NULL);CHKERRQ(ierr); nNodes += nNodesp; } if (intMat) { PetscInt maxNzsp; PetscInt maxNzformsp; ierr = MatSeqAIJGetMaxRowNonzeros(intMat, &maxNzsp);CHKERRQ(ierr); if (maxNzsp % pNk) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "interior matrix is not laid out as blocks of k-forms"); maxNzformsp = maxNzsp / pNk; maxNzforms = PetscMax(maxNzforms, maxNzformsp); } } ierr = MatCreateSeqAIJ(PETSC_COMM_SELF, nDofs, nNodes * Nc, maxNzforms * Nk, NULL, &allMat);CHKERRQ(ierr); ierr = MatSetOption(allMat,MAT_IGNORE_ZERO_ENTRIES,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscMalloc7(dim, &v0, dim, &pv0, dim * dim, &J, dim * dim, &Jinv, Nk * Nk, &L, maxNzforms * Nk, &work, maxNzforms * Nk, &iwork);CHKERRQ(ierr); for (j = 0; j < dim; j++) pv0[j] = -1.; ierr = PetscMalloc1(dim * nNodes, &nodes);CHKERRQ(ierr); for (p = pStart, countNodes = 0; p < pEnd; p++) { PetscDualSpace psp; PetscQuadrature intNodes; DM pdm; PetscInt pdim, pNk; PetscInt countNodesIn = countNodes; PetscReal detJ; Mat intMat; ierr = PetscDualSpaceGetPointSubspace(sp, p, &psp);CHKERRQ(ierr); if (!psp) continue; ierr = PetscDualSpaceGetDM(psp, &pdm);CHKERRQ(ierr); ierr = DMGetDimension(pdm, &pdim);CHKERRQ(ierr); if (pdim < PetscAbsInt(k)) continue; ierr = PetscDualSpaceGetInteriorData(psp, &intNodes, &intMat);CHKERRQ(ierr); if (intNodes == NULL && intMat == NULL) continue; ierr = PetscDTBinomialInt(pdim, PetscAbsInt(k), &pNk);CHKERRQ(ierr); if (p) { ierr = DMPlexComputeCellGeometryAffineFEM(dm, p, v0, J, Jinv, &detJ);CHKERRQ(ierr); } else { /* identity */ PetscInt i,j; for (i = 0; i < dim; i++) for (j = 0; j < dim; j++) J[i * dim + j] = Jinv[i * dim + j] = 0.; for (i = 0; i < dim; i++) J[i * dim + i] = Jinv[i * dim + i] = 1.; for (i = 0; i < dim; i++) v0[i] = -1.; } if (pdim != dim) { /* compactify Jacobian */ PetscInt i, j; for (i = 0; i < dim; i++) for (j = 0; j < pdim; j++) J[i * pdim + j] = J[i * dim + j]; } ierr = PetscDTAltVPullbackMatrix(pdim, dim, J, k, L);CHKERRQ(ierr); if (intNodes) { /* push forward quadrature locations by the affine transformation */ PetscInt nNodesp; const PetscReal *nodesp; PetscInt j; ierr = PetscQuadratureGetData(intNodes, NULL, NULL, &nNodesp, &nodesp, NULL);CHKERRQ(ierr); for (j = 0; j < nNodesp; j++, countNodes++) { PetscInt d, e; for (d = 0; d < dim; d++) { nodes[countNodes * dim + d] = v0[d]; for (e = 0; e < pdim; e++) { nodes[countNodes * dim + d] += J[d * pdim + e] * (nodesp[j * pdim + e] - pv0[e]); } } } } if (intMat) { PetscInt nrows; PetscInt off; ierr = PetscSectionGetDof(section, p, &nrows);CHKERRQ(ierr); ierr = PetscSectionGetOffset(section, p, &off);CHKERRQ(ierr); for (j = 0; j < nrows; j++) { PetscInt ncols; const PetscInt *cols; const PetscScalar *vals; PetscInt l, d, e; PetscInt row = j + off; ierr = MatGetRow(intMat, j, &ncols, &cols, &vals);CHKERRQ(ierr); if (ncols % pNk) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "interior matrix is not laid out as blocks of k-forms"); for (l = 0; l < ncols / pNk; l++) { PetscInt blockcol; for (d = 0; d < pNk; d++) { if ((cols[l * pNk + d] % pNk) != d) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "interior matrix is not laid out as blocks of k-forms"); } blockcol = cols[l * pNk] / pNk; for (d = 0; d < Nk; d++) { iwork[l * Nk + d] = (blockcol + countNodesIn) * Nk + d; } for (d = 0; d < Nk; d++) work[l * Nk + d] = 0.; for (d = 0; d < Nk; d++) { for (e = 0; e < pNk; e++) { /* "push forward" dof by pulling back a k-form to be evaluated on the point: multiply on the right by L */ work[l * Nk + d] += vals[l * pNk + e] * L[e * pNk + d]; } } } ierr = MatSetValues(allMat, 1, &row, (ncols / pNk) * Nk, iwork, work, INSERT_VALUES);CHKERRQ(ierr); ierr = MatRestoreRow(intMat, j, &ncols, &cols, &vals);CHKERRQ(ierr); } } } ierr = MatAssemblyBegin(allMat, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(allMat, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = PetscQuadratureCreate(PETSC_COMM_SELF, &allNodes);CHKERRQ(ierr); ierr = PetscQuadratureSetData(allNodes, dim, 0, nNodes, nodes, NULL);CHKERRQ(ierr); ierr = PetscFree7(v0, pv0, J, Jinv, L, work, iwork);CHKERRQ(ierr); ierr = MatDestroy(&(sp->allMat));CHKERRQ(ierr); sp->allMat = allMat; ierr = PetscQuadratureDestroy(&(sp->allNodes));CHKERRQ(ierr); sp->allNodes = allNodes; PetscFunctionReturn(0); } /* rather than trying to get all data from the functionals, we create * the functionals from rows of the quadrature -> dof matrix. * * Ideally most of the uses of PetscDualSpace in PetscFE will switch * to using intMat and allMat, so that the individual functionals * don't need to be constructed at all */ static PetscErrorCode PetscDualSpaceComputeFunctionalsFromAllData(PetscDualSpace sp) { PetscQuadrature allNodes; Mat allMat; PetscInt nDofs; PetscInt dim, k, Nk, Nc, f; DM dm; PetscInt nNodes, spdim; const PetscReal *nodes = NULL; PetscSection section; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDualSpaceGetDM(sp, &dm);CHKERRQ(ierr); ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); ierr = PetscDualSpaceGetNumComponents(sp, &Nc);CHKERRQ(ierr); ierr = PetscDualSpaceGetFormDegree(sp, &k);CHKERRQ(ierr); ierr = PetscDTBinomialInt(dim, PetscAbsInt(k), &Nk);CHKERRQ(ierr); ierr = PetscDualSpaceGetAllData(sp, &allNodes, &allMat);CHKERRQ(ierr); nNodes = 0; if (allNodes) { ierr = PetscQuadratureGetData(allNodes, NULL, NULL, &nNodes, &nodes, NULL);CHKERRQ(ierr); } ierr = MatGetSize(allMat, &nDofs, NULL);CHKERRQ(ierr); ierr = PetscDualSpaceGetSection(sp, §ion);CHKERRQ(ierr); ierr = PetscSectionGetStorageSize(section, &spdim);CHKERRQ(ierr); if (spdim != nDofs) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "incompatible all matrix size"); ierr = PetscMalloc1(nDofs, &(sp->functional));CHKERRQ(ierr); for (f = 0; f < nDofs; f++) { PetscInt ncols, c; const PetscInt *cols; const PetscScalar *vals; PetscReal *nodesf; PetscReal *weightsf; PetscInt nNodesf; PetscInt countNodes; ierr = MatGetRow(allMat, f, &ncols, &cols, &vals);CHKERRQ(ierr); if (ncols % Nk) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "all matrix is not laid out as blocks of k-forms"); for (c = 1, nNodesf = 1; c < ncols; c++) { if ((cols[c] / Nc) != (cols[c-1] / Nc)) nNodesf++; } ierr = PetscMalloc1(dim * nNodesf, &nodesf);CHKERRQ(ierr); ierr = PetscMalloc1(Nc * nNodesf, &weightsf);CHKERRQ(ierr); for (c = 0, countNodes = 0; c < ncols; c++) { if (!c || ((cols[c] / Nc) != (cols[c-1] / Nc))) { PetscInt d; for (d = 0; d < Nc; d++) { weightsf[countNodes * Nc + d] = 0.; } for (d = 0; d < dim; d++) { nodesf[countNodes * dim + d] = nodes[(cols[c] / Nc) * dim + d]; } countNodes++; } weightsf[(countNodes - 1) * Nc + (cols[c] % Nc)] = PetscRealPart(vals[c]); } ierr = PetscQuadratureCreate(PETSC_COMM_SELF, &(sp->functional[f]));CHKERRQ(ierr); ierr = PetscQuadratureSetData(sp->functional[f], dim, Nc, nNodesf, nodesf, weightsf);CHKERRQ(ierr); ierr = MatRestoreRow(allMat, f, &ncols, &cols, &vals);CHKERRQ(ierr); } PetscFunctionReturn(0); } /* take a matrix meant for k-forms and expand it to one for Ncopies */ static PetscErrorCode PetscDualSpaceLagrangeMatrixCreateCopies(Mat A, PetscInt Nk, PetscInt Ncopies, Mat *Abs) { PetscInt m, n, i, j, k; PetscInt maxnnz, *nnz, *iwork; Mat Ac; PetscErrorCode ierr; PetscFunctionBegin; ierr = MatGetSize(A, &m, &n);CHKERRQ(ierr); if (n % Nk) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of columns in A %D is not a multiple of Nk %D", n, Nk); ierr = PetscMalloc1(m * Ncopies, &nnz);CHKERRQ(ierr); for (i = 0, maxnnz = 0; i < m; i++) { PetscInt innz; ierr = MatGetRow(A, i, &innz, NULL, NULL);CHKERRQ(ierr); if (innz % Nk) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "A row %D nnzs is not a multiple of Nk %D", innz, Nk); for (j = 0; j < Ncopies; j++) nnz[i * Ncopies + j] = innz; maxnnz = PetscMax(maxnnz, innz); } ierr = MatCreateSeqAIJ(PETSC_COMM_SELF, m * Ncopies, n * Ncopies, 0, nnz, &Ac);CHKERRQ(ierr); ierr = MatSetOption(Ac, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE);CHKERRQ(ierr); ierr = PetscFree(nnz);CHKERRQ(ierr); ierr = PetscMalloc1(maxnnz, &iwork);CHKERRQ(ierr); for (i = 0; i < m; i++) { PetscInt innz; const PetscInt *cols; const PetscScalar *vals; ierr = MatGetRow(A, i, &innz, &cols, &vals);CHKERRQ(ierr); for (j = 0; j < innz; j++) iwork[j] = (cols[j] / Nk) * (Nk * Ncopies) + (cols[j] % Nk); for (j = 0; j < Ncopies; j++) { PetscInt row = i * Ncopies + j; ierr = MatSetValues(Ac, 1, &row, innz, iwork, vals, INSERT_VALUES);CHKERRQ(ierr); for (k = 0; k < innz; k++) iwork[k] += Nk; } ierr = MatRestoreRow(A, i, &innz, &cols, &vals);CHKERRQ(ierr); } ierr = PetscFree(iwork);CHKERRQ(ierr); ierr = MatAssemblyBegin(Ac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(Ac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); *Abs = Ac; PetscFunctionReturn(0); } /* check if a cell is a tensor product of the segment with a facet, * specifically checking if f and f2 can be the "endpoints" (like the triangles * at either end of a wedge) */ static PetscErrorCode DMPlexPointIsTensor_Internal_Given(DM dm, PetscInt p, PetscInt f, PetscInt f2, PetscBool *isTensor) { PetscInt coneSize, c; const PetscInt *cone; const PetscInt *fCone; const PetscInt *f2Cone; PetscInt fs[2]; PetscInt meetSize, nmeet; const PetscInt *meet; PetscErrorCode ierr; PetscFunctionBegin; fs[0] = f; fs[1] = f2; ierr = DMPlexGetMeet(dm, 2, fs, &meetSize, &meet);CHKERRQ(ierr); nmeet = meetSize; ierr = DMPlexRestoreMeet(dm, 2, fs, &meetSize, &meet);CHKERRQ(ierr); /* two points that have a non-empty meet cannot be at opposite ends of a cell */ if (nmeet) { *isTensor = PETSC_FALSE; PetscFunctionReturn(0); } ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); ierr = DMPlexGetCone(dm, f, &fCone);CHKERRQ(ierr); ierr = DMPlexGetCone(dm, f2, &f2Cone);CHKERRQ(ierr); for (c = 0; c < coneSize; c++) { PetscInt e, ef; PetscInt d = -1, d2 = -1; PetscInt dcount, d2count; PetscInt t = cone[c]; PetscInt tConeSize; PetscBool tIsTensor; const PetscInt *tCone; if (t == f || t == f2) continue; /* for every other facet in the cone, check that is has * one ridge in common with each end */ ierr = DMPlexGetConeSize(dm, t, &tConeSize);CHKERRQ(ierr); ierr = DMPlexGetCone(dm, t, &tCone);CHKERRQ(ierr); dcount = 0; d2count = 0; for (e = 0; e < tConeSize; e++) { PetscInt q = tCone[e]; for (ef = 0; ef < coneSize - 2; ef++) { if (fCone[ef] == q) { if (dcount) { *isTensor = PETSC_FALSE; PetscFunctionReturn(0); } d = q; dcount++; } else if (f2Cone[ef] == q) { if (d2count) { *isTensor = PETSC_FALSE; PetscFunctionReturn(0); } d2 = q; d2count++; } } } /* if the whole cell is a tensor with the segment, then this * facet should be a tensor with the segment */ ierr = DMPlexPointIsTensor_Internal_Given(dm, t, d, d2, &tIsTensor);CHKERRQ(ierr); if (!tIsTensor) { *isTensor = PETSC_FALSE; PetscFunctionReturn(0); } } *isTensor = PETSC_TRUE; PetscFunctionReturn(0); } /* determine if a cell is a tensor with a segment by looping over pairs of facets to find a pair * that could be the opposite ends */ static PetscErrorCode DMPlexPointIsTensor_Internal(DM dm, PetscInt p, PetscBool *isTensor, PetscInt *endA, PetscInt *endB) { PetscInt coneSize, c, c2; const PetscInt *cone; PetscErrorCode ierr; PetscFunctionBegin; ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); if (!coneSize) { if (isTensor) *isTensor = PETSC_FALSE; if (endA) *endA = -1; if (endB) *endB = -1; } ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); for (c = 0; c < coneSize; c++) { PetscInt f = cone[c]; PetscInt fConeSize; ierr = DMPlexGetConeSize(dm, f, &fConeSize);CHKERRQ(ierr); if (fConeSize != coneSize - 2) continue; for (c2 = c + 1; c2 < coneSize; c2++) { PetscInt f2 = cone[c2]; PetscBool isTensorff2; PetscInt f2ConeSize; ierr = DMPlexGetConeSize(dm, f2, &f2ConeSize);CHKERRQ(ierr); if (f2ConeSize != coneSize - 2) continue; ierr = DMPlexPointIsTensor_Internal_Given(dm, p, f, f2, &isTensorff2);CHKERRQ(ierr); if (isTensorff2) { if (isTensor) *isTensor = PETSC_TRUE; if (endA) *endA = f; if (endB) *endB = f2; PetscFunctionReturn(0); } } } if (isTensor) *isTensor = PETSC_FALSE; if (endA) *endA = -1; if (endB) *endB = -1; PetscFunctionReturn(0); } /* determine if a cell is a tensor with a segment by looping over pairs of facets to find a pair * that could be the opposite ends */ static PetscErrorCode DMPlexPointIsTensor(DM dm, PetscInt p, PetscBool *isTensor, PetscInt *endA, PetscInt *endB) { DMPlexInterpolatedFlag interpolated; PetscErrorCode ierr; PetscFunctionBegin; ierr = DMPlexIsInterpolated(dm, &interpolated);CHKERRQ(ierr); if (interpolated != DMPLEX_INTERPOLATED_FULL) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Only for interpolated DMPlex's"); ierr = DMPlexPointIsTensor_Internal(dm, p, isTensor, endA, endB);CHKERRQ(ierr); PetscFunctionReturn(0); } /* permute a quadrature -> dof matrix so that its rows are in revlex order by nodeIdx */ static PetscErrorCode MatPermuteByNodeIdx(Mat A, PetscLagNodeIndices ni, Mat *Aperm) { PetscInt m, n, i, j; PetscInt nodeIdxDim = ni->nodeIdxDim; PetscInt nodeVecDim = ni->nodeVecDim; PetscInt *perm; IS permIS; IS id; PetscInt *nIdxPerm; PetscReal *nVecPerm; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscLagNodeIndicesGetPermutation(ni, &perm);CHKERRQ(ierr); ierr = MatGetSize(A, &m, &n);CHKERRQ(ierr); ierr = PetscMalloc1(nodeIdxDim * m, &nIdxPerm);CHKERRQ(ierr); ierr = PetscMalloc1(nodeVecDim * m, &nVecPerm);CHKERRQ(ierr); for (i = 0; i < m; i++) for (j = 0; j < nodeIdxDim; j++) nIdxPerm[i * nodeIdxDim + j] = ni->nodeIdx[perm[i] * nodeIdxDim + j]; for (i = 0; i < m; i++) for (j = 0; j < nodeVecDim; j++) nVecPerm[i * nodeVecDim + j] = ni->nodeVec[perm[i] * nodeVecDim + j]; ierr = ISCreateGeneral(PETSC_COMM_SELF, m, perm, PETSC_USE_POINTER, &permIS);CHKERRQ(ierr); ierr = ISSetPermutation(permIS);CHKERRQ(ierr); ierr = ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &id);CHKERRQ(ierr); ierr = ISSetPermutation(id);CHKERRQ(ierr); ierr = MatPermute(A, permIS, id, Aperm);CHKERRQ(ierr); ierr = ISDestroy(&permIS);CHKERRQ(ierr); ierr = ISDestroy(&id);CHKERRQ(ierr); for (i = 0; i < m; i++) perm[i] = i; ierr = PetscFree(ni->nodeIdx);CHKERRQ(ierr); ierr = PetscFree(ni->nodeVec);CHKERRQ(ierr); ni->nodeIdx = nIdxPerm; ni->nodeVec = nVecPerm; PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceSetUp_Lagrange(PetscDualSpace sp) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *) sp->data; DM dm = sp->dm; DM dmint = NULL; PetscInt order; PetscInt Nc = sp->Nc; MPI_Comm comm; PetscBool continuous; PetscSection section; PetscInt depth, dim, pStart, pEnd, cStart, cEnd, p, *pStratStart, *pStratEnd, d; PetscInt formDegree, Nk, Ncopies; PetscInt tensorf = -1, tensorf2 = -1; PetscBool tensorCell, tensorSpace; PetscBool uniform, trimmed; Petsc1DNodeFamily nodeFamily; PetscInt numNodeSkip; DMPlexInterpolatedFlag interpolated; PetscBool isbdm; PetscErrorCode ierr; PetscFunctionBegin; /* step 1: sanitize input */ ierr = PetscObjectGetComm((PetscObject) sp, &comm);CHKERRQ(ierr); ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); ierr = PetscObjectTypeCompare((PetscObject)sp, "bdm", &isbdm);CHKERRQ(ierr); if (isbdm) { sp->k = -(dim-1); /* form degree of H-div */ ierr = PetscObjectChangeTypeName((PetscObject)sp, PETSCDUALSPACELAGRANGE);CHKERRQ(ierr); } ierr = PetscDualSpaceGetFormDegree(sp, &formDegree);CHKERRQ(ierr); if (PetscAbsInt(formDegree) > dim) SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "Form degree must be bounded by dimension"); ierr = PetscDTBinomialInt(dim,PetscAbsInt(formDegree),&Nk);CHKERRQ(ierr); if (sp->Nc <= 0 && lag->numCopies > 0) sp->Nc = Nk * lag->numCopies; Nc = sp->Nc; if (Nc % Nk) SETERRQ(comm, PETSC_ERR_ARG_INCOMP, "Number of components is not a multiple of form degree size"); if (lag->numCopies <= 0) lag->numCopies = Nc / Nk; Ncopies = lag->numCopies; if (Nc / Nk != Ncopies) SETERRQ(comm, PETSC_ERR_ARG_INCOMP, "Number of copies * (dim choose k) != Nc"); if (!dim) sp->order = 0; order = sp->order; uniform = sp->uniform; if (!uniform) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Variable order not supported yet"); if (lag->trimmed && !formDegree) lag->trimmed = PETSC_FALSE; /* trimmed spaces are the same as full spaces for 0-forms */ if (lag->nodeType == PETSCDTNODES_DEFAULT) { lag->nodeType = PETSCDTNODES_GAUSSJACOBI; lag->nodeExponent = 0.; /* trimmed spaces don't include corner vertices, so don't use end nodes by default */ lag->endNodes = lag->trimmed ? PETSC_FALSE : PETSC_TRUE; } /* If a trimmed space and the user did choose nodes with endpoints, skip them by default */ if (lag->numNodeSkip < 0) lag->numNodeSkip = (lag->trimmed && lag->endNodes) ? 1 : 0; numNodeSkip = lag->numNodeSkip; if (lag->trimmed && !order) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot have zeroth order trimmed elements"); if (lag->trimmed && PetscAbsInt(formDegree) == dim) { /* convert trimmed n-forms to untrimmed of one polynomial order less */ sp->order--; order--; lag->trimmed = PETSC_FALSE; } trimmed = lag->trimmed; if (!order || PetscAbsInt(formDegree) == dim) lag->continuous = PETSC_FALSE; continuous = lag->continuous; ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); if (pStart != 0 || cStart != 0) SETERRQ(PetscObjectComm((PetscObject)sp), PETSC_ERR_ARG_WRONGSTATE, "Expect DM with chart starting at zero and cells first"); if (cEnd != 1) SETERRQ(PetscObjectComm((PetscObject)sp), PETSC_ERR_ARG_WRONGSTATE, "Use PETSCDUALSPACEREFINED for multi-cell reference meshes"); ierr = DMPlexIsInterpolated(dm, &interpolated);CHKERRQ(ierr); if (interpolated != DMPLEX_INTERPOLATED_FULL) { ierr = DMPlexInterpolate(dm, &dmint);CHKERRQ(ierr); } else { ierr = PetscObjectReference((PetscObject)dm);CHKERRQ(ierr); dmint = dm; } tensorCell = PETSC_FALSE; if (dim > 1) { ierr = DMPlexPointIsTensor(dmint, 0, &tensorCell, &tensorf, &tensorf2);CHKERRQ(ierr); } lag->tensorCell = tensorCell; if (dim < 2 || !lag->tensorCell) lag->tensorSpace = PETSC_FALSE; tensorSpace = lag->tensorSpace; if (!lag->nodeFamily) { ierr = Petsc1DNodeFamilyCreate(lag->nodeType, lag->nodeExponent, lag->endNodes, &lag->nodeFamily);CHKERRQ(ierr); } nodeFamily = lag->nodeFamily; if (interpolated != DMPLEX_INTERPOLATED_FULL && continuous && (PetscAbsInt(formDegree) > 0 || order > 1)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Reference element won't support all boundary nodes"); /* step 2: construct the boundary spaces */ ierr = PetscMalloc2(depth+1,&pStratStart,depth+1,&pStratEnd);CHKERRQ(ierr); ierr = PetscCalloc1(pEnd,&(sp->pointSpaces));CHKERRQ(ierr); for (d = 0; d <= depth; ++d) {ierr = DMPlexGetDepthStratum(dm, d, &pStratStart[d], &pStratEnd[d]);CHKERRQ(ierr);} ierr = PetscDualSpaceSectionCreate_Internal(sp, §ion);CHKERRQ(ierr); sp->pointSection = section; if (continuous && !(lag->interiorOnly)) { PetscInt h; for (p = pStratStart[depth - 1]; p < pStratEnd[depth - 1]; p++) { /* calculate the facet dual spaces */ PetscReal v0[3]; DMPolytopeType ptype; PetscReal J[9], detJ; PetscInt q; ierr = DMPlexComputeCellGeometryAffineFEM(dm, p, v0, J, NULL, &detJ);CHKERRQ(ierr); ierr = DMPlexGetCellType(dm, p, &ptype);CHKERRQ(ierr); /* compare to previous facets: if computed, reference that dualspace */ for (q = pStratStart[depth - 1]; q < p; q++) { DMPolytopeType qtype; ierr = DMPlexGetCellType(dm, q, &qtype);CHKERRQ(ierr); if (qtype == ptype) break; } if (q < p) { /* this facet has the same dual space as that one */ ierr = PetscObjectReference((PetscObject)sp->pointSpaces[q]);CHKERRQ(ierr); sp->pointSpaces[p] = sp->pointSpaces[q]; continue; } /* if not, recursively compute this dual space */ ierr = PetscDualSpaceCreateFacetSubspace_Lagrange(sp,NULL,p,formDegree,Ncopies,PETSC_FALSE,&sp->pointSpaces[p]);CHKERRQ(ierr); } for (h = 2; h <= depth; h++) { /* get the higher subspaces from the facet subspaces */ PetscInt hd = depth - h; PetscInt hdim = dim - h; if (hdim < PetscAbsInt(formDegree)) break; for (p = pStratStart[hd]; p < pStratEnd[hd]; p++) { PetscInt suppSize, s; const PetscInt *supp; ierr = DMPlexGetSupportSize(dm, p, &suppSize);CHKERRQ(ierr); ierr = DMPlexGetSupport(dm, p, &supp);CHKERRQ(ierr); for (s = 0; s < suppSize; s++) { DM qdm; PetscDualSpace qsp, psp; PetscInt c, coneSize, q; const PetscInt *cone; const PetscInt *refCone; q = supp[0]; qsp = sp->pointSpaces[q]; ierr = DMPlexGetConeSize(dm, q, &coneSize);CHKERRQ(ierr); ierr = DMPlexGetCone(dm, q, &cone);CHKERRQ(ierr); for (c = 0; c < coneSize; c++) if (cone[c] == p) break; if (c == coneSize) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "cone/suppport mismatch"); ierr = PetscDualSpaceGetDM(qsp, &qdm);CHKERRQ(ierr); ierr = DMPlexGetCone(qdm, 0, &refCone);CHKERRQ(ierr); /* get the equivalent dual space from the support dual space */ ierr = PetscDualSpaceGetPointSubspace(qsp, refCone[c], &psp);CHKERRQ(ierr); if (!s) { ierr = PetscObjectReference((PetscObject)psp);CHKERRQ(ierr); sp->pointSpaces[p] = psp; } } } } for (p = 1; p < pEnd; p++) { PetscInt pspdim; if (!sp->pointSpaces[p]) continue; ierr = PetscDualSpaceGetInteriorDimension(sp->pointSpaces[p], &pspdim);CHKERRQ(ierr); ierr = PetscSectionSetDof(section, p, pspdim);CHKERRQ(ierr); } } if (Ncopies > 1) { Mat intMatScalar, allMatScalar; PetscDualSpace scalarsp; PetscDualSpace_Lag *scalarlag; ierr = PetscDualSpaceDuplicate(sp, &scalarsp);CHKERRQ(ierr); /* Setting the number of components to Nk is a space with 1 copy of each k-form */ ierr = PetscDualSpaceSetNumComponents(scalarsp, Nk);CHKERRQ(ierr); ierr = PetscDualSpaceSetUp(scalarsp);CHKERRQ(ierr); ierr = PetscDualSpaceGetInteriorData(scalarsp, &(sp->intNodes), &intMatScalar);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)(sp->intNodes));CHKERRQ(ierr); if (intMatScalar) {ierr = PetscDualSpaceLagrangeMatrixCreateCopies(intMatScalar, Nk, Ncopies, &(sp->intMat));CHKERRQ(ierr);} ierr = PetscDualSpaceGetAllData(scalarsp, &(sp->allNodes), &allMatScalar);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)(sp->allNodes));CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeMatrixCreateCopies(allMatScalar, Nk, Ncopies, &(sp->allMat));CHKERRQ(ierr); sp->spdim = scalarsp->spdim * Ncopies; sp->spintdim = scalarsp->spintdim * Ncopies; scalarlag = (PetscDualSpace_Lag *) scalarsp->data; ierr = PetscLagNodeIndicesReference(scalarlag->vertIndices);CHKERRQ(ierr); lag->vertIndices = scalarlag->vertIndices; ierr = PetscLagNodeIndicesReference(scalarlag->intNodeIndices);CHKERRQ(ierr); lag->intNodeIndices = scalarlag->intNodeIndices; ierr = PetscLagNodeIndicesReference(scalarlag->allNodeIndices);CHKERRQ(ierr); lag->allNodeIndices = scalarlag->allNodeIndices; ierr = PetscDualSpaceDestroy(&scalarsp);CHKERRQ(ierr); ierr = PetscSectionSetDof(section, 0, sp->spintdim);CHKERRQ(ierr); ierr = PetscDualSpaceSectionSetUp_Internal(sp, section);CHKERRQ(ierr); ierr = PetscDualSpaceComputeFunctionalsFromAllData(sp);CHKERRQ(ierr); ierr = PetscFree2(pStratStart, pStratEnd);CHKERRQ(ierr); ierr = DMDestroy(&dmint);CHKERRQ(ierr); PetscFunctionReturn(0); } if (trimmed && !continuous) { /* the dofs of a trimmed space don't have a nice tensor/lattice structure: * just construct the continuous dual space and copy all of the data over, * allocating it all to the cell instead of splitting it up between the boundaries */ PetscDualSpace spcont; PetscInt spdim, f; PetscQuadrature allNodes; PetscDualSpace_Lag *lagc; Mat allMat; ierr = PetscDualSpaceDuplicate(sp, &spcont);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeSetContinuity(spcont, PETSC_TRUE);CHKERRQ(ierr); ierr = PetscDualSpaceSetUp(spcont);CHKERRQ(ierr); ierr = PetscDualSpaceGetDimension(spcont, &spdim);CHKERRQ(ierr); sp->spdim = sp->spintdim = spdim; ierr = PetscSectionSetDof(section, 0, spdim);CHKERRQ(ierr); ierr = PetscDualSpaceSectionSetUp_Internal(sp, section);CHKERRQ(ierr); ierr = PetscMalloc1(spdim, &(sp->functional));CHKERRQ(ierr); for (f = 0; f < spdim; f++) { PetscQuadrature fn; ierr = PetscDualSpaceGetFunctional(spcont, f, &fn);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)fn);CHKERRQ(ierr); sp->functional[f] = fn; } ierr = PetscDualSpaceGetAllData(spcont, &allNodes, &allMat);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject) allNodes);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject) allNodes);CHKERRQ(ierr); sp->allNodes = sp->intNodes = allNodes; ierr = PetscObjectReference((PetscObject) allMat);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject) allMat);CHKERRQ(ierr); sp->allMat = sp->intMat = allMat; lagc = (PetscDualSpace_Lag *) spcont->data; ierr = PetscLagNodeIndicesReference(lagc->vertIndices);CHKERRQ(ierr); lag->vertIndices = lagc->vertIndices; ierr = PetscLagNodeIndicesReference(lagc->allNodeIndices);CHKERRQ(ierr); ierr = PetscLagNodeIndicesReference(lagc->allNodeIndices);CHKERRQ(ierr); lag->intNodeIndices = lagc->allNodeIndices; lag->allNodeIndices = lagc->allNodeIndices; ierr = PetscDualSpaceDestroy(&spcont);CHKERRQ(ierr); ierr = PetscFree2(pStratStart, pStratEnd);CHKERRQ(ierr); ierr = DMDestroy(&dmint);CHKERRQ(ierr); PetscFunctionReturn(0); } /* step 3: construct intNodes, and intMat, and combine it with boundray data to make allNodes and allMat */ if (!tensorSpace) { if (!tensorCell) {ierr = PetscLagNodeIndicesCreateSimplexVertices(dm, &(lag->vertIndices));CHKERRQ(ierr);} if (trimmed) { /* there is one dof in the interior of the a trimmed element for each full polynomial of with degree at most * order + k - dim - 1 */ if (order + PetscAbsInt(formDegree) > dim) { PetscInt sum = order + PetscAbsInt(formDegree) - dim - 1; PetscInt nDofs; ierr = PetscDualSpaceLagrangeCreateSimplexNodeMat(nodeFamily, dim, sum, Nk, numNodeSkip, &sp->intNodes, &sp->intMat, &(lag->intNodeIndices));CHKERRQ(ierr); ierr = MatGetSize(sp->intMat, &nDofs, NULL);CHKERRQ(ierr); ierr = PetscSectionSetDof(section, 0, nDofs);CHKERRQ(ierr); } ierr = PetscDualSpaceSectionSetUp_Internal(sp, section);CHKERRQ(ierr); ierr = PetscDualSpaceCreateAllDataFromInteriorData(sp);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeCreateAllNodeIdx(sp);CHKERRQ(ierr); } else { if (!continuous) { /* if discontinuous just construct one node for each set of dofs (a set of dofs is a basis for the k-form * space) */ PetscInt sum = order; PetscInt nDofs; ierr = PetscDualSpaceLagrangeCreateSimplexNodeMat(nodeFamily, dim, sum, Nk, numNodeSkip, &sp->intNodes, &sp->intMat, &(lag->intNodeIndices));CHKERRQ(ierr); ierr = MatGetSize(sp->intMat, &nDofs, NULL);CHKERRQ(ierr); ierr = PetscSectionSetDof(section, 0, nDofs);CHKERRQ(ierr); ierr = PetscDualSpaceSectionSetUp_Internal(sp, section);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)(sp->intNodes));CHKERRQ(ierr); sp->allNodes = sp->intNodes; ierr = PetscObjectReference((PetscObject)(sp->intMat));CHKERRQ(ierr); sp->allMat = sp->intMat; ierr = PetscLagNodeIndicesReference(lag->intNodeIndices);CHKERRQ(ierr); lag->allNodeIndices = lag->intNodeIndices; } else { /* there is one dof in the interior of the a full element for each trimmed polynomial of with degree at most * order + k - dim, but with complementary form degree */ if (order + PetscAbsInt(formDegree) > dim) { PetscDualSpace trimmedsp; PetscDualSpace_Lag *trimmedlag; PetscQuadrature intNodes; PetscInt trFormDegree = formDegree >= 0 ? formDegree - dim : dim - PetscAbsInt(formDegree); PetscInt nDofs; Mat intMat; ierr = PetscDualSpaceDuplicate(sp, &trimmedsp);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeSetTrimmed(trimmedsp, PETSC_TRUE);CHKERRQ(ierr); ierr = PetscDualSpaceSetOrder(trimmedsp, order + PetscAbsInt(formDegree) - dim);CHKERRQ(ierr); ierr = PetscDualSpaceSetFormDegree(trimmedsp, trFormDegree);CHKERRQ(ierr); trimmedlag = (PetscDualSpace_Lag *) trimmedsp->data; trimmedlag->numNodeSkip = numNodeSkip + 1; ierr = PetscDualSpaceSetUp(trimmedsp);CHKERRQ(ierr); ierr = PetscDualSpaceGetAllData(trimmedsp, &intNodes, &intMat);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)intNodes);CHKERRQ(ierr); sp->intNodes = intNodes; ierr = PetscObjectReference((PetscObject)intMat);CHKERRQ(ierr); sp->intMat = intMat; ierr = MatGetSize(sp->intMat, &nDofs, NULL);CHKERRQ(ierr); ierr = PetscLagNodeIndicesReference(trimmedlag->allNodeIndices);CHKERRQ(ierr); lag->intNodeIndices = trimmedlag->allNodeIndices; ierr = PetscDualSpaceDestroy(&trimmedsp);CHKERRQ(ierr); ierr = PetscSectionSetDof(section, 0, nDofs);CHKERRQ(ierr); } ierr = PetscDualSpaceSectionSetUp_Internal(sp, section);CHKERRQ(ierr); ierr = PetscDualSpaceCreateAllDataFromInteriorData(sp);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeCreateAllNodeIdx(sp);CHKERRQ(ierr); } } } else { PetscQuadrature intNodesTrace = NULL; PetscQuadrature intNodesFiber = NULL; PetscQuadrature intNodes = NULL; PetscLagNodeIndices intNodeIndices = NULL; Mat intMat = NULL; if (PetscAbsInt(formDegree) < dim) { /* get the trace k-forms on the first facet, and the 0-forms on the edge, and wedge them together to create some of the k-form dofs */ PetscDualSpace trace, fiber; PetscDualSpace_Lag *tracel, *fiberl; Mat intMatTrace, intMatFiber; if (sp->pointSpaces[tensorf]) { ierr = PetscObjectReference((PetscObject)(sp->pointSpaces[tensorf]));CHKERRQ(ierr); trace = sp->pointSpaces[tensorf]; } else { ierr = PetscDualSpaceCreateFacetSubspace_Lagrange(sp,NULL,tensorf,formDegree,Ncopies,PETSC_TRUE,&trace);CHKERRQ(ierr); } ierr = PetscDualSpaceCreateEdgeSubspace_Lagrange(sp,order,0,1,PETSC_TRUE,&fiber);CHKERRQ(ierr); tracel = (PetscDualSpace_Lag *) trace->data; fiberl = (PetscDualSpace_Lag *) fiber->data; ierr = PetscLagNodeIndicesCreateTensorVertices(dm, tracel->vertIndices, &(lag->vertIndices));CHKERRQ(ierr); ierr = PetscDualSpaceGetInteriorData(trace, &intNodesTrace, &intMatTrace);CHKERRQ(ierr); ierr = PetscDualSpaceGetInteriorData(fiber, &intNodesFiber, &intMatFiber);CHKERRQ(ierr); if (intNodesTrace && intNodesFiber) { ierr = PetscQuadratureCreateTensor(intNodesTrace, intNodesFiber, &intNodes);CHKERRQ(ierr); ierr = MatTensorAltV(intMatTrace, intMatFiber, dim-1, formDegree, 1, 0, &intMat);CHKERRQ(ierr); ierr = PetscLagNodeIndicesTensor(tracel->intNodeIndices, dim - 1, formDegree, fiberl->intNodeIndices, 1, 0, &intNodeIndices);CHKERRQ(ierr); } ierr = PetscObjectReference((PetscObject) intNodesTrace);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject) intNodesFiber);CHKERRQ(ierr); ierr = PetscDualSpaceDestroy(&fiber);CHKERRQ(ierr); ierr = PetscDualSpaceDestroy(&trace);CHKERRQ(ierr); } if (PetscAbsInt(formDegree) > 0) { /* get the trace (k-1)-forms on the first facet, and the 1-forms on the edge, and wedge them together to create the remaining k-form dofs */ PetscDualSpace trace, fiber; PetscDualSpace_Lag *tracel, *fiberl; PetscQuadrature intNodesTrace2, intNodesFiber2, intNodes2; PetscLagNodeIndices intNodeIndices2; Mat intMatTrace, intMatFiber, intMat2; PetscInt traceDegree = formDegree > 0 ? formDegree - 1 : formDegree + 1; PetscInt fiberDegree = formDegree > 0 ? 1 : -1; ierr = PetscDualSpaceCreateFacetSubspace_Lagrange(sp,NULL,tensorf,traceDegree,Ncopies,PETSC_TRUE,&trace);CHKERRQ(ierr); ierr = PetscDualSpaceCreateEdgeSubspace_Lagrange(sp,order,fiberDegree,1,PETSC_TRUE,&fiber);CHKERRQ(ierr); tracel = (PetscDualSpace_Lag *) trace->data; fiberl = (PetscDualSpace_Lag *) fiber->data; if (!lag->vertIndices) { ierr = PetscLagNodeIndicesCreateTensorVertices(dm, tracel->vertIndices, &(lag->vertIndices));CHKERRQ(ierr); } ierr = PetscDualSpaceGetInteriorData(trace, &intNodesTrace2, &intMatTrace);CHKERRQ(ierr); ierr = PetscDualSpaceGetInteriorData(fiber, &intNodesFiber2, &intMatFiber);CHKERRQ(ierr); if (intNodesTrace2 && intNodesFiber2) { ierr = PetscQuadratureCreateTensor(intNodesTrace2, intNodesFiber2, &intNodes2);CHKERRQ(ierr); ierr = MatTensorAltV(intMatTrace, intMatFiber, dim-1, traceDegree, 1, fiberDegree, &intMat2);CHKERRQ(ierr); ierr = PetscLagNodeIndicesTensor(tracel->intNodeIndices, dim - 1, traceDegree, fiberl->intNodeIndices, 1, fiberDegree, &intNodeIndices2);CHKERRQ(ierr); if (!intMat) { intMat = intMat2; intNodes = intNodes2; intNodeIndices = intNodeIndices2; } else { /* merge the matrices, quadrature points, and nodes */ PetscInt nM; PetscInt nDof, nDof2; PetscInt *toMerged = NULL, *toMerged2 = NULL; PetscQuadrature merged = NULL; PetscLagNodeIndices intNodeIndicesMerged = NULL; Mat matMerged = NULL; ierr = MatGetSize(intMat, &nDof, 0);CHKERRQ(ierr); ierr = MatGetSize(intMat2, &nDof2, 0);CHKERRQ(ierr); ierr = PetscQuadraturePointsMerge(intNodes, intNodes2, &merged, &toMerged, &toMerged2);CHKERRQ(ierr); ierr = PetscQuadratureGetData(merged, NULL, NULL, &nM, NULL, NULL);CHKERRQ(ierr); ierr = MatricesMerge(intMat, intMat2, dim, formDegree, nM, toMerged, toMerged2, &matMerged);CHKERRQ(ierr); ierr = PetscLagNodeIndicesMerge(intNodeIndices, intNodeIndices2, &intNodeIndicesMerged);CHKERRQ(ierr); ierr = PetscFree(toMerged);CHKERRQ(ierr); ierr = PetscFree(toMerged2);CHKERRQ(ierr); ierr = MatDestroy(&intMat);CHKERRQ(ierr); ierr = MatDestroy(&intMat2);CHKERRQ(ierr); ierr = PetscQuadratureDestroy(&intNodes);CHKERRQ(ierr); ierr = PetscQuadratureDestroy(&intNodes2);CHKERRQ(ierr); ierr = PetscLagNodeIndicesDestroy(&intNodeIndices);CHKERRQ(ierr); ierr = PetscLagNodeIndicesDestroy(&intNodeIndices2);CHKERRQ(ierr); intNodes = merged; intMat = matMerged; intNodeIndices = intNodeIndicesMerged; if (!trimmed) { /* I think users expect that, when a node has a full basis for the k-forms, * they should be consecutive dofs. That isn't the case for trimmed spaces, * but is for some of the nodes in untrimmed spaces, so in that case we * sort them to group them by node */ Mat intMatPerm; ierr = MatPermuteByNodeIdx(intMat, intNodeIndices, &intMatPerm);CHKERRQ(ierr); ierr = MatDestroy(&intMat);CHKERRQ(ierr); intMat = intMatPerm; } } } ierr = PetscDualSpaceDestroy(&fiber);CHKERRQ(ierr); ierr = PetscDualSpaceDestroy(&trace);CHKERRQ(ierr); } ierr = PetscQuadratureDestroy(&intNodesTrace);CHKERRQ(ierr); ierr = PetscQuadratureDestroy(&intNodesFiber);CHKERRQ(ierr); sp->intNodes = intNodes; sp->intMat = intMat; lag->intNodeIndices = intNodeIndices; { PetscInt nDofs = 0; if (intMat) { ierr = MatGetSize(intMat, &nDofs, NULL);CHKERRQ(ierr); } ierr = PetscSectionSetDof(section, 0, nDofs);CHKERRQ(ierr); } ierr = PetscDualSpaceSectionSetUp_Internal(sp, section);CHKERRQ(ierr); if (continuous) { ierr = PetscDualSpaceCreateAllDataFromInteriorData(sp);CHKERRQ(ierr); ierr = PetscDualSpaceLagrangeCreateAllNodeIdx(sp);CHKERRQ(ierr); } else { ierr = PetscObjectReference((PetscObject) intNodes);CHKERRQ(ierr); sp->allNodes = intNodes; ierr = PetscObjectReference((PetscObject) intMat);CHKERRQ(ierr); sp->allMat = intMat; ierr = PetscLagNodeIndicesReference(intNodeIndices);CHKERRQ(ierr); lag->allNodeIndices = intNodeIndices; } } ierr = PetscSectionGetStorageSize(section, &sp->spdim);CHKERRQ(ierr); ierr = PetscSectionGetConstrainedStorageSize(section, &sp->spintdim);CHKERRQ(ierr); ierr = PetscDualSpaceComputeFunctionalsFromAllData(sp);CHKERRQ(ierr); ierr = PetscFree2(pStratStart, pStratEnd);CHKERRQ(ierr); ierr = DMDestroy(&dmint);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Create a matrix that represents the transformation that DMPlexVecGetClosure() would need * to get the representation of the dofs for a mesh point if the mesh point had this orientation * relative to the cell */ PetscErrorCode PetscDualSpaceCreateInteriorSymmetryMatrix_Lagrange(PetscDualSpace sp, PetscInt ornt, Mat *symMat) { PetscDualSpace_Lag *lag; DM dm; PetscLagNodeIndices vertIndices, intNodeIndices; PetscLagNodeIndices ni; PetscInt nodeIdxDim, nodeVecDim, nNodes; PetscInt formDegree; PetscInt *perm, *permOrnt; PetscInt *nnz; PetscInt n; PetscInt maxGroupSize; PetscScalar *V, *W, *work; Mat A; PetscErrorCode ierr; PetscFunctionBegin; if (!sp->spintdim) { *symMat = NULL; PetscFunctionReturn(0); } lag = (PetscDualSpace_Lag *) sp->data; vertIndices = lag->vertIndices; intNodeIndices = lag->intNodeIndices; ierr = PetscDualSpaceGetDM(sp, &dm);CHKERRQ(ierr); ierr = PetscDualSpaceGetFormDegree(sp, &formDegree);CHKERRQ(ierr); ierr = PetscNew(&ni);CHKERRQ(ierr); ni->refct = 1; ni->nodeIdxDim = nodeIdxDim = intNodeIndices->nodeIdxDim; ni->nodeVecDim = nodeVecDim = intNodeIndices->nodeVecDim; ni->nNodes = nNodes = intNodeIndices->nNodes; ierr = PetscMalloc1(nNodes * nodeIdxDim, &(ni->nodeIdx));CHKERRQ(ierr); ierr = PetscMalloc1(nNodes * nodeVecDim, &(ni->nodeVec));CHKERRQ(ierr); /* push forward the dofs by the symmetry of the reference element induced by ornt */ ierr = PetscLagNodeIndicesPushForward(dm, vertIndices, 0, vertIndices, intNodeIndices, ornt, formDegree, ni->nodeIdx, ni->nodeVec);CHKERRQ(ierr); /* get the revlex order for both the original and transformed dofs */ ierr = PetscLagNodeIndicesGetPermutation(intNodeIndices, &perm);CHKERRQ(ierr); ierr = PetscLagNodeIndicesGetPermutation(ni, &permOrnt);CHKERRQ(ierr); ierr = PetscMalloc1(nNodes, &nnz);CHKERRQ(ierr); for (n = 0, maxGroupSize = 0; n < nNodes;) { /* incremented in the loop */ PetscInt *nind = &(ni->nodeIdx[permOrnt[n] * nodeIdxDim]); PetscInt m, nEnd; PetscInt groupSize; /* for each group of dofs that have the same nodeIdx coordinate */ for (nEnd = n + 1; nEnd < nNodes; nEnd++) { PetscInt *mind = &(ni->nodeIdx[permOrnt[nEnd] * nodeIdxDim]); PetscInt d; /* compare the oriented permutation indices */ for (d = 0; d < nodeIdxDim; d++) if (mind[d] != nind[d]) break; if (d < nodeIdxDim) break; } /* permOrnt[[n, nEnd)] is a group of dofs that, under the symmetry are at the same location */ /* the symmetry had better map the group of dofs with the same permuted nodeIdx * to a group of dofs with the same size, otherwise we messed up */ if (PetscDefined(USE_DEBUG)) { PetscInt m; PetscInt *nind = &(intNodeIndices->nodeIdx[perm[n] * nodeIdxDim]); for (m = n + 1; m < nEnd; m++) { PetscInt *mind = &(intNodeIndices->nodeIdx[perm[m] * nodeIdxDim]); PetscInt d; /* compare the oriented permutation indices */ for (d = 0; d < nodeIdxDim; d++) if (mind[d] != nind[d]) break; if (d < nodeIdxDim) break; } if (m < nEnd) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Dofs with same index after symmetry not same block size"); } groupSize = nEnd - n; /* each pushforward dof vector will be expressed in a basis of the unpermuted dofs */ for (m = n; m < nEnd; m++) nnz[permOrnt[m]] = groupSize; maxGroupSize = PetscMax(maxGroupSize, nEnd - n); n = nEnd; } if (maxGroupSize > nodeVecDim) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Dofs are not in blocks that can be solved"); ierr = MatCreateSeqAIJ(PETSC_COMM_SELF, nNodes, nNodes, 0, nnz, &A);CHKERRQ(ierr); ierr = PetscFree(nnz);CHKERRQ(ierr); ierr = PetscMalloc3(maxGroupSize * nodeVecDim, &V, maxGroupSize * nodeVecDim, &W, nodeVecDim * 2, &work);CHKERRQ(ierr); for (n = 0; n < nNodes;) { /* incremented in the loop */ PetscInt *nind = &(ni->nodeIdx[permOrnt[n] * nodeIdxDim]); PetscInt nEnd; PetscInt m; PetscInt groupSize; for (nEnd = n + 1; nEnd < nNodes; nEnd++) { PetscInt *mind = &(ni->nodeIdx[permOrnt[nEnd] * nodeIdxDim]); PetscInt d; /* compare the oriented permutation indices */ for (d = 0; d < nodeIdxDim; d++) if (mind[d] != nind[d]) break; if (d < nodeIdxDim) break; } groupSize = nEnd - n; /* get all of the vectors from the original and all of the pushforward vectors */ for (m = n; m < nEnd; m++) { PetscInt d; for (d = 0; d < nodeVecDim; d++) { V[(m - n) * nodeVecDim + d] = intNodeIndices->nodeVec[perm[m] * nodeVecDim + d]; W[(m - n) * nodeVecDim + d] = ni->nodeVec[permOrnt[m] * nodeVecDim + d]; } } /* now we have to solve for W in terms of V: the systems isn't always square, but the span * of V and W should always be the same, so the solution of the normal equations works */ { char transpose = 'N'; PetscBLASInt bm = nodeVecDim; PetscBLASInt bn = groupSize; PetscBLASInt bnrhs = groupSize; PetscBLASInt blda = bm; PetscBLASInt bldb = bm; PetscBLASInt blwork = 2 * nodeVecDim; PetscBLASInt info; PetscStackCallBLAS("LAPACKgels",LAPACKgels_(&transpose,&bm,&bn,&bnrhs,V,&blda,W,&bldb,work,&blwork, &info)); if (info != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to GELS"); /* repack */ { PetscInt i, j; for (i = 0; i < groupSize; i++) { for (j = 0; j < groupSize; j++) { /* notice the different leading dimension */ V[i * groupSize + j] = W[i * nodeVecDim + j]; } } } } ierr = MatSetValues(A, groupSize, &permOrnt[n], groupSize, &perm[n], V, INSERT_VALUES);CHKERRQ(ierr); n = nEnd; } ierr = MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); *symMat = A; ierr = PetscFree3(V,W,work);CHKERRQ(ierr); ierr = PetscLagNodeIndicesDestroy(&ni);CHKERRQ(ierr); PetscFunctionReturn(0); } #define BaryIndex(perEdge,a,b,c) (((b)*(2*perEdge+1-(b)))/2)+(c) #define CartIndex(perEdge,a,b) (perEdge*(a)+b) /* the existing interface for symmetries is insufficient for all cases: * - it should be sufficient for form degrees that are scalar (0 and n) * - it should be sufficient for hypercube dofs * - it isn't sufficient for simplex cells with non-scalar form degrees if * there are any dofs in the interior * * We compute the general transformation matrices, and if they fit, we return them, * otherwise we error (but we should probably change the interface to allow for * these symmetries) */ static PetscErrorCode PetscDualSpaceGetSymmetries_Lagrange(PetscDualSpace sp, const PetscInt ****perms, const PetscScalar ****flips) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *) sp->data; PetscInt dim, order, Nc; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscDualSpaceGetOrder(sp,&order);CHKERRQ(ierr); ierr = PetscDualSpaceGetNumComponents(sp,&Nc);CHKERRQ(ierr); ierr = DMGetDimension(sp->dm,&dim);CHKERRQ(ierr); if (!lag->symComputed) { /* store symmetries */ PetscInt pStart, pEnd, p; PetscInt numPoints; PetscInt numFaces; PetscInt spintdim; PetscInt ***symperms; PetscScalar ***symflips; ierr = DMPlexGetChart(sp->dm, &pStart, &pEnd);CHKERRQ(ierr); numPoints = pEnd - pStart; ierr = DMPlexGetConeSize(sp->dm, 0, &numFaces);CHKERRQ(ierr); ierr = PetscCalloc1(numPoints,&symperms);CHKERRQ(ierr); ierr = PetscCalloc1(numPoints,&symflips);CHKERRQ(ierr); spintdim = sp->spintdim; /* The nodal symmetry behavior is not present when tensorSpace != tensorCell: someone might want this for the "S" * family of FEEC spaces. Most used in particular are discontinuous polynomial L2 spaces in tensor cells, where * the symmetries are not necessary for FE assembly. So for now we assume this is the case and don't return * symmetries if tensorSpace != tensorCell */ if (spintdim && 0 < dim && dim < 3 && (lag->tensorSpace == lag->tensorCell)) { /* compute self symmetries */ PetscInt **cellSymperms; PetscScalar **cellSymflips; PetscInt ornt; PetscInt nCopies = Nc / lag->intNodeIndices->nodeVecDim; PetscInt nNodes = lag->intNodeIndices->nNodes; lag->numSelfSym = 2 * numFaces; lag->selfSymOff = numFaces; ierr = PetscCalloc1(2*numFaces,&cellSymperms);CHKERRQ(ierr); ierr = PetscCalloc1(2*numFaces,&cellSymflips);CHKERRQ(ierr); /* we want to be able to index symmetries directly with the orientations, which range from [-numFaces,numFaces) */ symperms[0] = &cellSymperms[numFaces]; symflips[0] = &cellSymflips[numFaces]; if (lag->intNodeIndices->nodeVecDim * nCopies != Nc) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Node indices incompatible with dofs"); if (nNodes * nCopies != spintdim) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Node indices incompatible with dofs"); for (ornt = -numFaces; ornt < numFaces; ornt++) { /* for every symmetry, compute the symmetry matrix, and extract rows to see if it fits in the perm + flip framework */ Mat symMat; PetscInt *perm; PetscScalar *flips; PetscInt i; if (!ornt) continue; ierr = PetscMalloc1(spintdim, &perm);CHKERRQ(ierr); ierr = PetscCalloc1(spintdim, &flips);CHKERRQ(ierr); for (i = 0; i < spintdim; i++) perm[i] = -1; ierr = PetscDualSpaceCreateInteriorSymmetryMatrix_Lagrange(sp, ornt, &symMat);CHKERRQ(ierr); for (i = 0; i < nNodes; i++) { PetscInt ncols; PetscInt j, k; const PetscInt *cols; const PetscScalar *vals; PetscBool nz_seen = PETSC_FALSE; ierr = MatGetRow(symMat, i, &ncols, &cols, &vals);CHKERRQ(ierr); for (j = 0; j < ncols; j++) { if (PetscAbsScalar(vals[j]) > PETSC_SMALL) { if (nz_seen) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "This dual space has symmetries that can't be described as a permutation + sign flips"); nz_seen = PETSC_TRUE; if (PetscAbsReal(PetscAbsScalar(vals[j]) - PetscRealConstant(1.)) > PETSC_SMALL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "This dual space has symmetries that can't be described as a permutation + sign flips"); if (PetscAbsReal(PetscImaginaryPart(vals[j])) > PETSC_SMALL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "This dual space has symmetries that can't be described as a permutation + sign flips"); if (perm[cols[j] * nCopies] >= 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "This dual space has symmetries that can't be described as a permutation + sign flips"); for (k = 0; k < nCopies; k++) { perm[cols[j] * nCopies + k] = i * nCopies + k; } if (PetscRealPart(vals[j]) < 0.) { for (k = 0; k < nCopies; k++) { flips[i * nCopies + k] = -1.; } } else { for (k = 0; k < nCopies; k++) { flips[i * nCopies + k] = 1.; } } } } ierr = MatRestoreRow(symMat, i, &ncols, &cols, &vals);CHKERRQ(ierr); } ierr = MatDestroy(&symMat);CHKERRQ(ierr); /* if there were no sign flips, keep NULL */ for (i = 0; i < spintdim; i++) if (flips[i] != 1.) break; if (i == spintdim) { ierr = PetscFree(flips);CHKERRQ(ierr); flips = NULL; } /* if the permutation is identity, keep NULL */ for (i = 0; i < spintdim; i++) if (perm[i] != i) break; if (i == spintdim) { ierr = PetscFree(perm);CHKERRQ(ierr); perm = NULL; } symperms[0][ornt] = perm; symflips[0][ornt] = flips; } /* if no orientations produced non-identity permutations, keep NULL */ for (ornt = -numFaces; ornt < numFaces; ornt++) if (symperms[0][ornt]) break; if (ornt == numFaces) { ierr = PetscFree(cellSymperms);CHKERRQ(ierr); symperms[0] = NULL; } /* if no orientations produced sign flips, keep NULL */ for (ornt = -numFaces; ornt < numFaces; ornt++) if (symflips[0][ornt]) break; if (ornt == numFaces) { ierr = PetscFree(cellSymflips);CHKERRQ(ierr); symflips[0] = NULL; } } { /* get the symmetries of closure points */ PetscInt closureSize = 0; PetscInt *closure = NULL; PetscInt r; ierr = DMPlexGetTransitiveClosure(sp->dm,0,PETSC_TRUE,&closureSize,&closure);CHKERRQ(ierr); for (r = 0; r < closureSize; r++) { PetscDualSpace psp; PetscInt point = closure[2 * r]; PetscInt pspintdim; const PetscInt ***psymperms = NULL; const PetscScalar ***psymflips = NULL; if (!point) continue; ierr = PetscDualSpaceGetPointSubspace(sp, point, &psp);CHKERRQ(ierr); if (!psp) continue; ierr = PetscDualSpaceGetInteriorDimension(psp, &pspintdim);CHKERRQ(ierr); if (!pspintdim) continue; ierr = PetscDualSpaceGetSymmetries(psp,&psymperms,&psymflips);CHKERRQ(ierr); symperms[r] = (PetscInt **) (psymperms ? psymperms[0] : NULL); symflips[r] = (PetscScalar **) (psymflips ? psymflips[0] : NULL); } ierr = DMPlexRestoreTransitiveClosure(sp->dm,0,PETSC_TRUE,&closureSize,&closure);CHKERRQ(ierr); } for (p = 0; p < pEnd; p++) if (symperms[p]) break; if (p == pEnd) { ierr = PetscFree(symperms);CHKERRQ(ierr); symperms = NULL; } for (p = 0; p < pEnd; p++) if (symflips[p]) break; if (p == pEnd) { ierr = PetscFree(symflips);CHKERRQ(ierr); symflips = NULL; } lag->symperms = symperms; lag->symflips = symflips; lag->symComputed = PETSC_TRUE; } if (perms) *perms = (const PetscInt ***) lag->symperms; if (flips) *flips = (const PetscScalar ***) lag->symflips; PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceLagrangeGetContinuity_Lagrange(PetscDualSpace sp, PetscBool *continuous) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *) sp->data; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); PetscValidPointer(continuous, 2); *continuous = lag->continuous; PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceLagrangeSetContinuity_Lagrange(PetscDualSpace sp, PetscBool continuous) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *) sp->data; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); lag->continuous = continuous; PetscFunctionReturn(0); } /*@ PetscDualSpaceLagrangeGetContinuity - Retrieves the flag for element continuity Not Collective Input Parameter: . sp - the PetscDualSpace Output Parameter: . continuous - flag for element continuity Level: intermediate .seealso: PetscDualSpaceLagrangeSetContinuity() @*/ PetscErrorCode PetscDualSpaceLagrangeGetContinuity(PetscDualSpace sp, PetscBool *continuous) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); PetscValidPointer(continuous, 2); ierr = PetscTryMethod(sp, "PetscDualSpaceLagrangeGetContinuity_C", (PetscDualSpace,PetscBool*),(sp,continuous));CHKERRQ(ierr); PetscFunctionReturn(0); } /*@ PetscDualSpaceLagrangeSetContinuity - Indicate whether the element is continuous Logically Collective on sp Input Parameters: + sp - the PetscDualSpace - continuous - flag for element continuity Options Database: . -petscdualspace_lagrange_continuity Level: intermediate .seealso: PetscDualSpaceLagrangeGetContinuity() @*/ PetscErrorCode PetscDualSpaceLagrangeSetContinuity(PetscDualSpace sp, PetscBool continuous) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); PetscValidLogicalCollectiveBool(sp, continuous, 2); ierr = PetscTryMethod(sp, "PetscDualSpaceLagrangeSetContinuity_C", (PetscDualSpace,PetscBool),(sp,continuous));CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceLagrangeGetTensor_Lagrange(PetscDualSpace sp, PetscBool *tensor) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *)sp->data; PetscFunctionBegin; *tensor = lag->tensorSpace; PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceLagrangeSetTensor_Lagrange(PetscDualSpace sp, PetscBool tensor) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *)sp->data; PetscFunctionBegin; lag->tensorSpace = tensor; PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceLagrangeGetTrimmed_Lagrange(PetscDualSpace sp, PetscBool *trimmed) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *)sp->data; PetscFunctionBegin; *trimmed = lag->trimmed; PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceLagrangeSetTrimmed_Lagrange(PetscDualSpace sp, PetscBool trimmed) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *)sp->data; PetscFunctionBegin; lag->trimmed = trimmed; PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceLagrangeGetNodeType_Lagrange(PetscDualSpace sp, PetscDTNodeType *nodeType, PetscBool *boundary, PetscReal *exponent) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *)sp->data; PetscFunctionBegin; if (nodeType) *nodeType = lag->nodeType; if (boundary) *boundary = lag->endNodes; if (exponent) *exponent = lag->nodeExponent; PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceLagrangeSetNodeType_Lagrange(PetscDualSpace sp, PetscDTNodeType nodeType, PetscBool boundary, PetscReal exponent) { PetscDualSpace_Lag *lag = (PetscDualSpace_Lag *)sp->data; PetscFunctionBegin; if (nodeType == PETSCDTNODES_GAUSSJACOBI && exponent <= -1.) SETERRQ(PetscObjectComm((PetscObject) sp), PETSC_ERR_ARG_OUTOFRANGE, "Exponent must be > -1"); lag->nodeType = nodeType; lag->endNodes = boundary; lag->nodeExponent = exponent; PetscFunctionReturn(0); } /*@ PetscDualSpaceLagrangeGetTensor - Get the tensor nature of the dual space Not collective Input Parameter: . sp - The PetscDualSpace Output Parameter: . tensor - Whether the dual space has tensor layout (vs. simplicial) Level: intermediate .seealso: PetscDualSpaceLagrangeSetTensor(), PetscDualSpaceCreate() @*/ PetscErrorCode PetscDualSpaceLagrangeGetTensor(PetscDualSpace sp, PetscBool *tensor) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); PetscValidPointer(tensor, 2); ierr = PetscTryMethod(sp,"PetscDualSpaceLagrangeGetTensor_C",(PetscDualSpace,PetscBool *),(sp,tensor));CHKERRQ(ierr); PetscFunctionReturn(0); } /*@ PetscDualSpaceLagrangeSetTensor - Set the tensor nature of the dual space Not collective Input Parameters: + sp - The PetscDualSpace - tensor - Whether the dual space has tensor layout (vs. simplicial) Level: intermediate .seealso: PetscDualSpaceLagrangeGetTensor(), PetscDualSpaceCreate() @*/ PetscErrorCode PetscDualSpaceLagrangeSetTensor(PetscDualSpace sp, PetscBool tensor) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); ierr = PetscTryMethod(sp,"PetscDualSpaceLagrangeSetTensor_C",(PetscDualSpace,PetscBool),(sp,tensor));CHKERRQ(ierr); PetscFunctionReturn(0); } /*@ PetscDualSpaceLagrangeGetTrimmed - Get the trimmed nature of the dual space Not collective Input Parameter: . sp - The PetscDualSpace Output Parameter: . trimmed - Whether the dual space represents to dual basis of a trimmed polynomial space (e.g. Raviart-Thomas and higher order / other form degree variants) Level: intermediate .seealso: PetscDualSpaceLagrangeSetTrimmed(), PetscDualSpaceCreate() @*/ PetscErrorCode PetscDualSpaceLagrangeGetTrimmed(PetscDualSpace sp, PetscBool *trimmed) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); PetscValidPointer(trimmed, 2); ierr = PetscTryMethod(sp,"PetscDualSpaceLagrangeGetTrimmed_C",(PetscDualSpace,PetscBool *),(sp,trimmed));CHKERRQ(ierr); PetscFunctionReturn(0); } /*@ PetscDualSpaceLagrangeSetTrimmed - Set the trimmed nature of the dual space Not collective Input Parameters: + sp - The PetscDualSpace - trimmed - Whether the dual space represents to dual basis of a trimmed polynomial space (e.g. Raviart-Thomas and higher order / other form degree variants) Level: intermediate .seealso: PetscDualSpaceLagrangeGetTrimmed(), PetscDualSpaceCreate() @*/ PetscErrorCode PetscDualSpaceLagrangeSetTrimmed(PetscDualSpace sp, PetscBool trimmed) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); ierr = PetscTryMethod(sp,"PetscDualSpaceLagrangeSetTrimmed_C",(PetscDualSpace,PetscBool),(sp,trimmed));CHKERRQ(ierr); PetscFunctionReturn(0); } /*@ PetscDualSpaceLagrangeGetNodeType - Get a description of how nodes are laid out for Lagrange polynomials in this dual space Not collective Input Parameter: . sp - The PetscDualSpace Output Parameters: + nodeType - The type of nodes . boundary - Whether the node type is one that includes endpoints (if nodeType is PETSCDTNODES_GAUSSJACOBI, nodes that include the boundary are Gauss-Lobatto-Jacobi nodes) - exponent - If nodeType is PETSCDTNODES_GAUSJACOBI, indicates the exponent used for both ends of the 1D Jacobi weight function '0' is Gauss-Legendre, '-0.5' is Gauss-Chebyshev of the first type, '0.5' is Gauss-Chebyshev of the second type Level: advanced .seealso: PetscDTNodeType, PetscDualSpaceLagrangeSetNodeType() @*/ PetscErrorCode PetscDualSpaceLagrangeGetNodeType(PetscDualSpace sp, PetscDTNodeType *nodeType, PetscBool *boundary, PetscReal *exponent) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); if (nodeType) PetscValidPointer(nodeType, 2); if (boundary) PetscValidPointer(boundary, 3); if (exponent) PetscValidPointer(exponent, 4); ierr = PetscTryMethod(sp,"PetscDualSpaceLagrangeGetNodeType_C",(PetscDualSpace,PetscDTNodeType *,PetscBool *,PetscReal *),(sp,nodeType,boundary,exponent));CHKERRQ(ierr); PetscFunctionReturn(0); } /*@ PetscDualSpaceLagrangeSetNodeType - Set a description of how nodes are laid out for Lagrange polynomials in this dual space Logically collective Input Parameters: + sp - The PetscDualSpace . nodeType - The type of nodes . boundary - Whether the node type is one that includes endpoints (if nodeType is PETSCDTNODES_GAUSSJACOBI, nodes that include the boundary are Gauss-Lobatto-Jacobi nodes) - exponent - If nodeType is PETSCDTNODES_GAUSJACOBI, indicates the exponent used for both ends of the 1D Jacobi weight function '0' is Gauss-Legendre, '-0.5' is Gauss-Chebyshev of the first type, '0.5' is Gauss-Chebyshev of the second type Level: advanced .seealso: PetscDTNodeType, PetscDualSpaceLagrangeGetNodeType() @*/ PetscErrorCode PetscDualSpaceLagrangeSetNodeType(PetscDualSpace sp, PetscDTNodeType nodeType, PetscBool boundary, PetscReal exponent) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); ierr = PetscTryMethod(sp,"PetscDualSpaceLagrangeSetNodeType_C",(PetscDualSpace,PetscDTNodeType,PetscBool,PetscReal),(sp,nodeType,boundary,exponent));CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PetscDualSpaceInitialize_Lagrange(PetscDualSpace sp) { PetscFunctionBegin; sp->ops->destroy = PetscDualSpaceDestroy_Lagrange; sp->ops->view = PetscDualSpaceView_Lagrange; sp->ops->setfromoptions = PetscDualSpaceSetFromOptions_Lagrange; sp->ops->duplicate = PetscDualSpaceDuplicate_Lagrange; sp->ops->setup = PetscDualSpaceSetUp_Lagrange; sp->ops->createheightsubspace = NULL; sp->ops->createpointsubspace = NULL; sp->ops->getsymmetries = PetscDualSpaceGetSymmetries_Lagrange; sp->ops->apply = PetscDualSpaceApplyDefault; sp->ops->applyall = PetscDualSpaceApplyAllDefault; sp->ops->applyint = PetscDualSpaceApplyInteriorDefault; sp->ops->createalldata = PetscDualSpaceCreateAllDataDefault; sp->ops->createintdata = PetscDualSpaceCreateInteriorDataDefault; PetscFunctionReturn(0); } /*MC PETSCDUALSPACELAGRANGE = "lagrange" - A PetscDualSpace object that encapsulates a dual space of pointwise evaluation functionals Level: intermediate .seealso: PetscDualSpaceType, PetscDualSpaceCreate(), PetscDualSpaceSetType() M*/ PETSC_EXTERN PetscErrorCode PetscDualSpaceCreate_Lagrange(PetscDualSpace sp) { PetscDualSpace_Lag *lag; PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 1); ierr = PetscNewLog(sp,&lag);CHKERRQ(ierr); sp->data = lag; lag->tensorCell = PETSC_FALSE; lag->tensorSpace = PETSC_FALSE; lag->continuous = PETSC_TRUE; lag->numCopies = PETSC_DEFAULT; lag->numNodeSkip = PETSC_DEFAULT; lag->nodeType = PETSCDTNODES_DEFAULT; ierr = PetscDualSpaceInitialize_Lagrange(sp);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeGetContinuity_C", PetscDualSpaceLagrangeGetContinuity_Lagrange);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeSetContinuity_C", PetscDualSpaceLagrangeSetContinuity_Lagrange);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeGetTensor_C", PetscDualSpaceLagrangeGetTensor_Lagrange);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeSetTensor_C", PetscDualSpaceLagrangeSetTensor_Lagrange);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeGetTrimmed_C", PetscDualSpaceLagrangeGetTrimmed_Lagrange);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeSetTrimmed_C", PetscDualSpaceLagrangeSetTrimmed_Lagrange);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeGetNodeType_C", PetscDualSpaceLagrangeGetNodeType_Lagrange);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject) sp, "PetscDualSpaceLagrangeSetNodeType_C", PetscDualSpaceLagrangeSetNodeType_Lagrange);CHKERRQ(ierr); PetscFunctionReturn(0); }