/* Code for manipulating distributed regular arrays in parallel. */ #include /*I "petscdmda.h" I*/ #undef __FUNCT__ #define __FUNCT__ "DMDAGetRay" /*@C DMDAGetRay - Returns a vector on process zero that contains a row or column of the values in a DMDA vector Collective on DMDA Input Parameters: + da - the distributed array . vec - the vector . dir - Cartesian direction, either DMDA_X, DMDA_Y, or DMDA_Z - gp - global grid point number in this direction Output Parameters: + newvec - the new vector that can hold the values (size zero on all processes except process 0) - scatter - the VecScatter that will map from the original vector to the slice Level: advanced Notes: All processors that share the DMDA must call this with the same gp value .keywords: distributed array, get, processor subset @*/ PetscErrorCode DMDAGetRay(DM da,DMDADirection dir,PetscInt gp,Vec *newvec,VecScatter *scatter) { PetscMPIInt rank; DM_DA *dd = (DM_DA*)da->data; PetscErrorCode ierr; IS is; AO ao; Vec vec; PetscInt *indices,i,j; PetscFunctionBegin; if (dd->dim == 1) SETERRQ(((PetscObject)da)->comm,PETSC_ERR_SUP,"Cannot get slice from 1d DMDA"); if (dd->dim == 3) SETERRQ(((PetscObject)da)->comm,PETSC_ERR_SUP,"Cannot get slice from 3d DMDA"); ierr = DMDAGetAO(da,&ao);CHKERRQ(ierr); ierr = MPI_Comm_rank(((PetscObject)da)->comm,&rank);CHKERRQ(ierr); if (!rank) { if (dir == DMDA_Y) { ierr = PetscMalloc(dd->w*dd->M*sizeof(PetscInt),&indices);CHKERRQ(ierr); indices[0] = gp*dd->M*dd->w; for (i=1; iM*dd->w; i++) indices[i] = indices[i-1] + 1; ierr = AOApplicationToPetsc(ao,dd->M*dd->w,indices);CHKERRQ(ierr); ierr = VecCreate(PETSC_COMM_SELF,newvec);CHKERRQ(ierr); ierr = VecSetBlockSize(*newvec,dd->w);CHKERRQ(ierr); ierr = VecSetSizes(*newvec,dd->M*dd->w,PETSC_DETERMINE);CHKERRQ(ierr); ierr = VecSetType(*newvec,VECSEQ);CHKERRQ(ierr); ierr = ISCreateGeneral(PETSC_COMM_SELF,dd->w*dd->M,indices,PETSC_OWN_POINTER,&is);CHKERRQ(ierr); } else if (dir == DMDA_X) { ierr = PetscMalloc(dd->w*dd->N*sizeof(PetscInt),&indices);CHKERRQ(ierr); indices[0] = dd->w*gp; for (j=1; jw; j++) indices[j] = indices[j-1] + 1; for (i=1; iN; i++) { indices[i*dd->w] = indices[i*dd->w-1] + dd->w*dd->M - dd->w + 1; for (j=1; jw; j++) indices[i*dd->w + j] = indices[i*dd->w + j - 1] + 1; } ierr = AOApplicationToPetsc(ao,dd->w*dd->N,indices);CHKERRQ(ierr); ierr = VecCreate(PETSC_COMM_SELF,newvec);CHKERRQ(ierr); ierr = VecSetBlockSize(*newvec,dd->w);CHKERRQ(ierr); ierr = VecSetSizes(*newvec,dd->N*dd->w,PETSC_DETERMINE);CHKERRQ(ierr); ierr = VecSetType(*newvec,VECSEQ);CHKERRQ(ierr); ierr = ISCreateGeneral(PETSC_COMM_SELF,dd->w*dd->N,indices,PETSC_OWN_POINTER,&is);CHKERRQ(ierr); } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown DMDADirection"); } else { ierr = VecCreateSeq(PETSC_COMM_SELF,0,newvec);CHKERRQ(ierr); ierr = ISCreateGeneral(PETSC_COMM_SELF,0,0,PETSC_COPY_VALUES,&is);CHKERRQ(ierr); } ierr = DMGetGlobalVector(da,&vec);CHKERRQ(ierr); ierr = VecScatterCreate(vec,is,*newvec,PETSC_NULL,scatter);CHKERRQ(ierr); ierr = DMRestoreGlobalVector(da,&vec);CHKERRQ(ierr); ierr = ISDestroy(&is);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMDAGetProcessorSubset" /*@C DMDAGetProcessorSubset - Returns a communicator consisting only of the processors in a DMDA that own a particular global x, y, or z grid point (corresponding to a logical plane in a 3D grid or a line in a 2D grid). Collective on DMDA Input Parameters: + da - the distributed array . dir - Cartesian direction, either DMDA_X, DMDA_Y, or DMDA_Z - gp - global grid point number in this direction Output Parameters: . comm - new communicator Level: advanced Notes: All processors that share the DMDA must call this with the same gp value This routine is particularly useful to compute boundary conditions or other application-specific calculations that require manipulating sets of data throughout a logical plane of grid points. .keywords: distributed array, get, processor subset @*/ PetscErrorCode DMDAGetProcessorSubset(DM da,DMDADirection dir,PetscInt gp,MPI_Comm *comm) { MPI_Group group,subgroup; PetscErrorCode ierr; PetscInt i,ict,flag,*owners,xs,xm,ys,ym,zs,zm; PetscMPIInt size,*ranks = PETSC_NULL; DM_DA *dd = (DM_DA*)da->data; PetscFunctionBegin; PetscValidHeaderSpecific(da,DM_CLASSID,1); flag = 0; ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); ierr = MPI_Comm_size(((PetscObject)da)->comm,&size);CHKERRQ(ierr); if (dir == DMDA_Z) { if (dd->dim < 3) SETERRQ(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"DMDA_Z invalid for DMDA dim < 3"); if (gp < 0 || gp > dd->P) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid grid point"); if (gp >= zs && gp < zs+zm) flag = 1; } else if (dir == DMDA_Y) { if (dd->dim == 1) SETERRQ(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"DMDA_Y invalid for DMDA dim = 1"); if (gp < 0 || gp > dd->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid grid point"); if (gp >= ys && gp < ys+ym) flag = 1; } else if (dir == DMDA_X) { if (gp < 0 || gp > dd->M) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid grid point"); if (gp >= xs && gp < xs+xm) flag = 1; } else SETERRQ(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid direction"); ierr = PetscMalloc2(size,PetscInt,&owners,size,PetscMPIInt,&ranks);CHKERRQ(ierr); ierr = MPI_Allgather(&flag,1,MPIU_INT,owners,1,MPIU_INT,((PetscObject)da)->comm);CHKERRQ(ierr); ict = 0; ierr = PetscInfo2(da,"DMDAGetProcessorSubset: dim=%D, direction=%d, procs: ",dd->dim,(int)dir);CHKERRQ(ierr); for (i=0; icomm,&group);CHKERRQ(ierr); ierr = MPI_Group_incl(group,ict,ranks,&subgroup);CHKERRQ(ierr); ierr = MPI_Comm_create(((PetscObject)da)->comm,subgroup,comm);CHKERRQ(ierr); ierr = MPI_Group_free(&subgroup);CHKERRQ(ierr); ierr = MPI_Group_free(&group);CHKERRQ(ierr); ierr = PetscFree2(owners,ranks);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMDAGetProcessorSubsets" /*@C DMDAGetProcessorSubsets - Returns communicators consisting only of the processors in a DMDA adjacent in a particular dimension, corresponding to a logical plane in a 3D grid or a line in a 2D grid. Collective on DMDA Input Parameters: + da - the distributed array - dir - Cartesian direction, either DMDA_X, DMDA_Y, or DMDA_Z Output Parameters: . subcomm - new communicator Level: advanced Notes: This routine is useful for distributing one-dimensional data in a tensor product grid. .keywords: distributed array, get, processor subset @*/ PetscErrorCode DMDAGetProcessorSubsets(DM da, DMDADirection dir, MPI_Comm *subcomm) { MPI_Comm comm; MPI_Group group, subgroup; PetscInt subgroupSize = 0; PetscInt *firstPoints; PetscMPIInt size, *subgroupRanks = PETSC_NULL; PetscInt xs, xm, ys, ym, zs, zm, firstPoint, p; PetscErrorCode ierr; DM_DA *dd = (DM_DA*)da->data; PetscFunctionBegin; PetscValidHeaderSpecific(da, DM_CLASSID, 1); comm = ((PetscObject) da)->comm; ierr = DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm);CHKERRQ(ierr); ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); if (dir == DMDA_Z) { if (dd->dim < 3) SETERRQ(comm,PETSC_ERR_ARG_OUTOFRANGE,"DMDA_Z invalid for DMDA dim < 3"); firstPoint = zs; } else if (dir == DMDA_Y) { if (dd->dim == 1) SETERRQ(comm,PETSC_ERR_ARG_OUTOFRANGE,"DMDA_Y invalid for DMDA dim = 1"); firstPoint = ys; } else if (dir == DMDA_X) { firstPoint = xs; } else SETERRQ(comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid direction"); ierr = PetscMalloc2(size, PetscInt, &firstPoints, size, PetscMPIInt, &subgroupRanks);CHKERRQ(ierr); ierr = MPI_Allgather(&firstPoint, 1, MPIU_INT, firstPoints, 1, MPIU_INT, comm);CHKERRQ(ierr); ierr = PetscInfo2(da,"DMDAGetProcessorSubset: dim=%D, direction=%d, procs: ",dd->dim,(int)dir);CHKERRQ(ierr); for (p = 0; p < size; ++p) { if (firstPoints[p] == firstPoint) { subgroupRanks[subgroupSize++] = p; ierr = PetscInfo1(da, "%D ", p);CHKERRQ(ierr); } } ierr = PetscInfo(da, "\n");CHKERRQ(ierr); ierr = MPI_Comm_group(comm, &group);CHKERRQ(ierr); ierr = MPI_Group_incl(group, subgroupSize, subgroupRanks, &subgroup);CHKERRQ(ierr); ierr = MPI_Comm_create(comm, subgroup, subcomm);CHKERRQ(ierr); ierr = MPI_Group_free(&subgroup);CHKERRQ(ierr); ierr = MPI_Group_free(&group);CHKERRQ(ierr); ierr = PetscFree2(firstPoints, subgroupRanks);CHKERRQ(ierr); PetscFunctionReturn(0); }