/* Code for manipulating distributed regular arrays in parallel. */ #include /*I "petscdmda.h" I*/ /*@ DMDAGetLogicalCoordinate - Returns a the i,j,k logical coordinate for the closest mesh point to a x,y,z point in the coordinates of the DMDA Collective on da Input Parameters: + da - the distributed array . x - the first physical coordinate . y - the second physical coordinate - z - the third physical coordinate Output Parameters: + II - the first logical coordinate (-1 on processes that do not contain that point) . JJ - the second logical coordinate (-1 on processes that do not contain that point) . KK - the third logical coordinate (-1 on processes that do not contain that point) . X - (optional) the first coordinate of the located grid point . Y - (optional) the second coordinate of the located grid point - Z - (optional) the third coordinate of the located grid point Level: advanced Notes: All processors that share the DMDA must call this with the same coordinate value @*/ PetscErrorCode DMDAGetLogicalCoordinate(DM da,PetscScalar x,PetscScalar y,PetscScalar z,PetscInt *II,PetscInt *JJ,PetscInt *KK,PetscScalar *X,PetscScalar *Y,PetscScalar *Z) { PetscErrorCode ierr; Vec coors; DM dacoors; DMDACoor2d **c; PetscInt i,j,xs,xm,ys,ym; PetscReal d,D = PETSC_MAX_REAL,Dv; PetscMPIInt rank,root; PetscFunctionBegin; if (da->dim == 1) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Cannot get point from 1d DMDA"); if (da->dim == 3) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Cannot get point from 3d DMDA"); *II = -1; *JJ = -1; ierr = DMGetCoordinateDM(da,&dacoors);CHKERRQ(ierr); ierr = DMDAGetCorners(dacoors,&xs,&ys,NULL,&xm,&ym,NULL);CHKERRQ(ierr); ierr = DMGetCoordinates(da,&coors);CHKERRQ(ierr); ierr = DMDAVecGetArrayRead(dacoors,coors,&c);CHKERRQ(ierr); for (j=ys; jdata; PetscErrorCode ierr; IS is; AO ao; Vec vec; PetscInt *indices,i,j; PetscFunctionBegin; if (da->dim == 3) SETERRQ(PetscObjectComm((PetscObject) da), PETSC_ERR_SUP, "Cannot get slice from 3d DMDA"); ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) da), &rank);CHKERRMPI(ierr); ierr = DMDAGetAO(da, &ao);CHKERRQ(ierr); if (rank == 0) { if (da->dim == 1) { if (dir == DM_X) { ierr = PetscMalloc1(dd->w, &indices);CHKERRQ(ierr); indices[0] = dd->w*gp; for (i = 1; i < dd->w; ++i) indices[i] = indices[i-1] + 1; ierr = AOApplicationToPetsc(ao, dd->w, indices);CHKERRQ(ierr); ierr = VecCreate(PETSC_COMM_SELF, newvec);CHKERRQ(ierr); ierr = VecSetBlockSize(*newvec, dd->w);CHKERRQ(ierr); ierr = VecSetSizes(*newvec, dd->w, PETSC_DETERMINE);CHKERRQ(ierr); ierr = VecSetType(*newvec, VECSEQ);CHKERRQ(ierr); ierr = ISCreateGeneral(PETSC_COMM_SELF, dd->w, indices, PETSC_OWN_POINTER, &is);CHKERRQ(ierr); } else if (dir == DM_Y) SETERRQ(PetscObjectComm((PetscObject) da), PETSC_ERR_SUP, "Cannot get Y slice from 1d DMDA"); else SETERRQ(PetscObjectComm((PetscObject) da), PETSC_ERR_ARG_OUTOFRANGE, "Unknown DMDirection"); } else { if (dir == DM_Y) { ierr = PetscMalloc1(dd->w*dd->M,&indices);CHKERRQ(ierr); indices[0] = gp*dd->M*dd->w; for (i=1; iM*dd->w; i++) indices[i] = indices[i-1] + 1; ierr = AOApplicationToPetsc(ao,dd->M*dd->w,indices);CHKERRQ(ierr); ierr = VecCreate(PETSC_COMM_SELF,newvec);CHKERRQ(ierr); ierr = VecSetBlockSize(*newvec,dd->w);CHKERRQ(ierr); ierr = VecSetSizes(*newvec,dd->M*dd->w,PETSC_DETERMINE);CHKERRQ(ierr); ierr = VecSetType(*newvec,VECSEQ);CHKERRQ(ierr); ierr = ISCreateGeneral(PETSC_COMM_SELF,dd->w*dd->M,indices,PETSC_OWN_POINTER,&is);CHKERRQ(ierr); } else if (dir == DM_X) { ierr = PetscMalloc1(dd->w*dd->N,&indices);CHKERRQ(ierr); indices[0] = dd->w*gp; for (j=1; jw; j++) indices[j] = indices[j-1] + 1; for (i=1; iN; i++) { indices[i*dd->w] = indices[i*dd->w-1] + dd->w*dd->M - dd->w + 1; for (j=1; jw; j++) indices[i*dd->w + j] = indices[i*dd->w + j - 1] + 1; } ierr = AOApplicationToPetsc(ao,dd->w*dd->N,indices);CHKERRQ(ierr); ierr = VecCreate(PETSC_COMM_SELF,newvec);CHKERRQ(ierr); ierr = VecSetBlockSize(*newvec,dd->w);CHKERRQ(ierr); ierr = VecSetSizes(*newvec,dd->N*dd->w,PETSC_DETERMINE);CHKERRQ(ierr); ierr = VecSetType(*newvec,VECSEQ);CHKERRQ(ierr); ierr = ISCreateGeneral(PETSC_COMM_SELF,dd->w*dd->N,indices,PETSC_OWN_POINTER,&is);CHKERRQ(ierr); } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown DMDirection"); } } else { ierr = VecCreateSeq(PETSC_COMM_SELF, 0, newvec);CHKERRQ(ierr); ierr = ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_COPY_VALUES, &is);CHKERRQ(ierr); } ierr = DMGetGlobalVector(da, &vec);CHKERRQ(ierr); ierr = VecScatterCreate(vec, is, *newvec, NULL, scatter);CHKERRQ(ierr); ierr = DMRestoreGlobalVector(da, &vec);CHKERRQ(ierr); ierr = ISDestroy(&is);CHKERRQ(ierr); PetscFunctionReturn(0); } /*@C DMDAGetProcessorSubset - Returns a communicator consisting only of the processors in a DMDA that own a particular global x, y, or z grid point (corresponding to a logical plane in a 3D grid or a line in a 2D grid). Collective on da Input Parameters: + da - the distributed array . dir - Cartesian direction, either DM_X, DM_Y, or DM_Z - gp - global grid point number in this direction Output Parameter: . comm - new communicator Level: advanced Notes: All processors that share the DMDA must call this with the same gp value After use, comm should be freed with MPI_Comm_free() This routine is particularly useful to compute boundary conditions or other application-specific calculations that require manipulating sets of data throughout a logical plane of grid points. Not supported from Fortran @*/ PetscErrorCode DMDAGetProcessorSubset(DM da,DMDirection dir,PetscInt gp,MPI_Comm *comm) { MPI_Group group,subgroup; PetscErrorCode ierr; PetscInt i,ict,flag,*owners,xs,xm,ys,ym,zs,zm; PetscMPIInt size,*ranks = NULL; DM_DA *dd = (DM_DA*)da->data; PetscFunctionBegin; PetscValidHeaderSpecificType(da,DM_CLASSID,1,DMDA); flag = 0; ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); ierr = MPI_Comm_size(PetscObjectComm((PetscObject)da),&size);CHKERRMPI(ierr); if (dir == DM_Z) { if (da->dim < 3) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_ARG_OUTOFRANGE,"DM_Z invalid for DMDA dim < 3"); if (gp < 0 || gp > dd->P) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid grid point"); if (gp >= zs && gp < zs+zm) flag = 1; } else if (dir == DM_Y) { if (da->dim == 1) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_ARG_OUTOFRANGE,"DM_Y invalid for DMDA dim = 1"); if (gp < 0 || gp > dd->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid grid point"); if (gp >= ys && gp < ys+ym) flag = 1; } else if (dir == DM_X) { if (gp < 0 || gp > dd->M) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid grid point"); if (gp >= xs && gp < xs+xm) flag = 1; } else SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_ARG_OUTOFRANGE,"Invalid direction"); ierr = PetscMalloc2(size,&owners,size,&ranks);CHKERRQ(ierr); ierr = MPI_Allgather(&flag,1,MPIU_INT,owners,1,MPIU_INT,PetscObjectComm((PetscObject)da));CHKERRMPI(ierr); ict = 0; ierr = PetscInfo2(da,"DMDAGetProcessorSubset: dim=%D, direction=%d, procs: ",da->dim,(int)dir);CHKERRQ(ierr); for (i=0; idim < 3) SETERRQ(comm,PETSC_ERR_ARG_OUTOFRANGE,"DM_Z invalid for DMDA dim < 3"); firstPoint = zs; } else if (dir == DM_Y) { if (da->dim == 1) SETERRQ(comm,PETSC_ERR_ARG_OUTOFRANGE,"DM_Y invalid for DMDA dim = 1"); firstPoint = ys; } else if (dir == DM_X) { firstPoint = xs; } else SETERRQ(comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid direction"); ierr = PetscMalloc2(size, &firstPoints, size, &subgroupRanks);CHKERRQ(ierr); ierr = MPI_Allgather(&firstPoint, 1, MPIU_INT, firstPoints, 1, MPIU_INT, comm);CHKERRMPI(ierr); ierr = PetscInfo2(da,"DMDAGetProcessorSubset: dim=%D, direction=%d, procs: ",da->dim,(int)dir);CHKERRQ(ierr); for (p = 0; p < size; ++p) { if (firstPoints[p] == firstPoint) { subgroupRanks[subgroupSize++] = p; ierr = PetscInfo1(da, "%D ", p);CHKERRQ(ierr); } } ierr = PetscInfo(da, "\n");CHKERRQ(ierr); ierr = MPI_Comm_group(comm, &group);CHKERRMPI(ierr); ierr = MPI_Group_incl(group, subgroupSize, subgroupRanks, &subgroup);CHKERRMPI(ierr); ierr = MPI_Comm_create(comm, subgroup, subcomm);CHKERRMPI(ierr); ierr = MPI_Group_free(&subgroup);CHKERRMPI(ierr); ierr = MPI_Group_free(&group);CHKERRMPI(ierr); ierr = PetscFree2(firstPoints, subgroupRanks);CHKERRQ(ierr); PetscFunctionReturn(0); }