/* Code for manipulating distributed regular arrays in parallel. */ #include /*I "petscdmda.h" I*/ #if defined(PETSC_HAVE_MATLAB_ENGINE) #include /* MATLAB include file */ #undef __FUNCT__ #define __FUNCT__ "DMView_DA_Matlab" PetscErrorCode DMView_DA_Matlab(DM da,PetscViewer viewer) { PetscErrorCode ierr; PetscMPIInt rank; PetscInt dim,m,n,p,dof,swidth; DMDAStencilType stencil; DMBoundaryType bx,by,bz; mxArray *mx; const char *fnames[] = {"dimension","m","n","p","dof","stencil_width","bx","by","bz","stencil_type"}; PetscFunctionBegin; ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)da),&rank);CHKERRQ(ierr); if (!rank) { ierr = DMDAGetInfo(da,&dim,&m,&n,&p,0,0,0,&dof,&swidth,&bx,&by,&bz,&stencil);CHKERRQ(ierr); mx = mxCreateStructMatrix(1,1,8,(const char**)fnames); if (!mx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Unable to generate MATLAB struct array to hold DMDA informations"); mxSetFieldByNumber(mx,0,0,mxCreateDoubleScalar((double)dim)); mxSetFieldByNumber(mx,0,1,mxCreateDoubleScalar((double)m)); mxSetFieldByNumber(mx,0,2,mxCreateDoubleScalar((double)n)); mxSetFieldByNumber(mx,0,3,mxCreateDoubleScalar((double)p)); mxSetFieldByNumber(mx,0,4,mxCreateDoubleScalar((double)dof)); mxSetFieldByNumber(mx,0,5,mxCreateDoubleScalar((double)swidth)); mxSetFieldByNumber(mx,0,6,mxCreateDoubleScalar((double)bx)); mxSetFieldByNumber(mx,0,7,mxCreateDoubleScalar((double)by)); mxSetFieldByNumber(mx,0,8,mxCreateDoubleScalar((double)bz)); mxSetFieldByNumber(mx,0,9,mxCreateDoubleScalar((double)stencil)); ierr = PetscObjectName((PetscObject)da);CHKERRQ(ierr); ierr = PetscViewerMatlabPutVariable(viewer,((PetscObject)da)->name,mx);CHKERRQ(ierr); } PetscFunctionReturn(0); } #endif #undef __FUNCT__ #define __FUNCT__ "DMView_DA_Binary" PetscErrorCode DMView_DA_Binary(DM da,PetscViewer viewer) { PetscErrorCode ierr; PetscMPIInt rank; PetscInt dim,m,n,p,dof,swidth,M,N,P; DMDAStencilType stencil; DMBoundaryType bx,by,bz; MPI_Comm comm; PetscBool coors = PETSC_FALSE; PetscFunctionBegin; ierr = PetscObjectGetComm((PetscObject)da,&comm);CHKERRQ(ierr); ierr = DMDAGetInfo(da,&dim,&m,&n,&p,&M,&N,&P,&dof,&swidth,&bx,&by,&bz,&stencil);CHKERRQ(ierr); ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); if (!rank) { ierr = PetscViewerBinaryWrite(viewer,&dim,1,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscViewerBinaryWrite(viewer,&m,1,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscViewerBinaryWrite(viewer,&n,1,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscViewerBinaryWrite(viewer,&p,1,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscViewerBinaryWrite(viewer,&dof,1,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscViewerBinaryWrite(viewer,&swidth,1,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscViewerBinaryWrite(viewer,&bx,1,PETSC_ENUM,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscViewerBinaryWrite(viewer,&by,1,PETSC_ENUM,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscViewerBinaryWrite(viewer,&bz,1,PETSC_ENUM,PETSC_FALSE);CHKERRQ(ierr); ierr = PetscViewerBinaryWrite(viewer,&stencil,1,PETSC_ENUM,PETSC_FALSE);CHKERRQ(ierr); if (da->coordinates) coors = PETSC_TRUE; ierr = PetscViewerBinaryWrite(viewer,&coors,1,PETSC_BOOL,PETSC_FALSE);CHKERRQ(ierr); } /* save the coordinates if they exist to disk (in the natural ordering) */ if (da->coordinates) { ierr = VecView(da->coordinates,viewer);CHKERRQ(ierr); } PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMView_DA_VTK" PetscErrorCode DMView_DA_VTK(DM da, PetscViewer viewer) { PetscInt dim, dof, M = 0, N = 0, P = 0; PetscErrorCode ierr; PetscFunctionBegin; ierr = DMDAGetInfo(da, &dim, &M, &N, &P, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL);CHKERRQ(ierr); if (!da->coordinates) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP, "VTK output requires DMDA coordinates."); /* Write Header */ ierr = PetscViewerASCIIPrintf(viewer,"# vtk DataFile Version 2.0\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"Structured Mesh Example\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"ASCII\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"DATASET STRUCTURED_GRID\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"DIMENSIONS %d %d %d\n", M, N, P);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"POINTS %d double\n", M*N*P);CHKERRQ(ierr); if (da->coordinates) { DM dac; Vec natural; ierr = DMGetCoordinateDM(da, &dac);CHKERRQ(ierr); ierr = DMDACreateNaturalVector(dac, &natural);CHKERRQ(ierr); ierr = PetscObjectSetOptionsPrefix((PetscObject) natural, "coor_");CHKERRQ(ierr); ierr = DMDAGlobalToNaturalBegin(dac, da->coordinates, INSERT_VALUES, natural);CHKERRQ(ierr); ierr = DMDAGlobalToNaturalEnd(dac, da->coordinates, INSERT_VALUES, natural);CHKERRQ(ierr); ierr = PetscViewerPushFormat(viewer, PETSC_VIEWER_ASCII_VTK_COORDS);CHKERRQ(ierr); ierr = VecView(natural, viewer);CHKERRQ(ierr); ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); ierr = VecDestroy(&natural);CHKERRQ(ierr); } PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMDAGetInfo" /*@C DMDAGetInfo - Gets information about a given distributed array. Not Collective Input Parameter: . da - the distributed array Output Parameters: + dim - dimension of the distributed array (1, 2, or 3) . M, N, P - global dimension in each direction of the array . m, n, p - corresponding number of procs in each dimension . dof - number of degrees of freedom per node . s - stencil width . bx,by,bz - type of ghost nodes at boundary, one of DM_BOUNDARY_NONE, DM_BOUNDARY_GHOSTED, DM_BOUNDARY_MIRROR, DM_BOUNDARY_PERIODIC - st - stencil type, either DMDA_STENCIL_STAR or DMDA_STENCIL_BOX Level: beginner Note: Use NULL (NULL_INTEGER in Fortran) in place of any output parameter that is not of interest. .keywords: distributed array, get, information .seealso: DMView(), DMDAGetCorners(), DMDAGetLocalInfo() @*/ PetscErrorCode DMDAGetInfo(DM da,PetscInt *dim,PetscInt *M,PetscInt *N,PetscInt *P,PetscInt *m,PetscInt *n,PetscInt *p,PetscInt *dof,PetscInt *s,DMBoundaryType *bx,DMBoundaryType *by,DMBoundaryType *bz,DMDAStencilType *st) { DM_DA *dd = (DM_DA*)da->data; PetscFunctionBegin; PetscValidHeaderSpecific(da,DM_CLASSID,1); if (dim) *dim = da->dim; if (M) { if (dd->Mo < 0) *M = dd->M; else *M = dd->Mo; } if (N) { if (dd->No < 0) *N = dd->N; else *N = dd->No; } if (P) { if (dd->Po < 0) *P = dd->P; else *P = dd->Po; } if (m) *m = dd->m; if (n) *n = dd->n; if (p) *p = dd->p; if (dof) *dof = dd->w; if (s) *s = dd->s; if (bx) *bx = dd->bx; if (by) *by = dd->by; if (bz) *bz = dd->bz; if (st) *st = dd->stencil_type; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMDAGetLocalInfo" /*@C DMDAGetLocalInfo - Gets information about a given distributed array and this processors location in it Not Collective Input Parameter: . da - the distributed array Output Parameters: . dainfo - structure containing the information Level: beginner .keywords: distributed array, get, information .seealso: DMDAGetInfo(), DMDAGetCorners() @*/ PetscErrorCode DMDAGetLocalInfo(DM da,DMDALocalInfo *info) { PetscInt w; DM_DA *dd = (DM_DA*)da->data; PetscFunctionBegin; PetscValidHeaderSpecific(da,DM_CLASSID,1); PetscValidPointer(info,2); info->da = da; info->dim = da->dim; if (dd->Mo < 0) info->mx = dd->M; else info->mx = dd->Mo; if (dd->No < 0) info->my = dd->N; else info->my = dd->No; if (dd->Po < 0) info->mz = dd->P; else info->mz = dd->Po; info->dof = dd->w; info->sw = dd->s; info->bx = dd->bx; info->by = dd->by; info->bz = dd->bz; info->st = dd->stencil_type; /* since the xs, xe ... have all been multiplied by the number of degrees of freedom per cell, w = dd->w, we divide that out before returning.*/ w = dd->w; info->xs = dd->xs/w + dd->xo; info->xm = (dd->xe - dd->xs)/w; /* the y and z have NOT been multiplied by w */ info->ys = dd->ys + dd->yo; info->ym = (dd->ye - dd->ys); info->zs = dd->zs + dd->zo; info->zm = (dd->ze - dd->zs); info->gxs = dd->Xs/w + dd->xo; info->gxm = (dd->Xe - dd->Xs)/w; /* the y and z have NOT been multiplied by w */ info->gys = dd->Ys + dd->yo; info->gym = (dd->Ye - dd->Ys); info->gzs = dd->Zs + dd->zo; info->gzm = (dd->Ze - dd->Zs); PetscFunctionReturn(0); }