/* Routines to visualize DMDAs and fields through GLVis */ #include #include typedef struct { PetscBool ll; } DMDAGhostedGLVisViewerCtx; static PetscErrorCode DMDAGhostedDestroyGLVisViewerCtx_Private(void **vctx) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscFree(*vctx);CHKERRQ(ierr); PetscFunctionReturn(0); } typedef struct { Vec xlocal; } DMDAFieldGLVisViewerCtx; static PetscErrorCode DMDAFieldDestroyGLVisViewerCtx_Private(void *vctx) { DMDAFieldGLVisViewerCtx *ctx = (DMDAFieldGLVisViewerCtx*)vctx; PetscErrorCode ierr; PetscFunctionBegin; ierr = VecDestroy(&ctx->xlocal);CHKERRQ(ierr); ierr = PetscFree(vctx);CHKERRQ(ierr); PetscFunctionReturn(0); } /* dactx->ll is false -> all but the last proc per dimension claim the ghosted node on the right dactx->ll is true -> all but the first proc per dimension claim the ghosted node on the left */ static PetscErrorCode DMDAGetNumElementsGhosted(DM da, PetscInt *nex, PetscInt *ney, PetscInt *nez) { DMDAGhostedGLVisViewerCtx *dactx; PetscInt sx,sy,sz,ien,jen,ken; PetscErrorCode ierr; PetscFunctionBegin; /* Appease -Wmaybe-uninitialized */ if (nex) *nex = -1; if (ney) *ney = -1; if (nez) *nez = -1; ierr = DMDAGetCorners(da,&sx,&sy,&sz,&ien,&jen,&ken);CHKERRQ(ierr); ierr = DMGetApplicationContext(da,(void**)&dactx);CHKERRQ(ierr); if (dactx->ll) { PetscInt dim; ierr = DMGetDimension(da,&dim);CHKERRQ(ierr); if (!sx) ien--; if (!sy && dim > 1) jen--; if (!sz && dim > 2) ken--; } else { PetscInt M,N,P; ierr = DMDAGetInfo(da,NULL,&M,&N,&P,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr); if (sx+ien == M) ien--; if (sy+jen == N) jen--; if (sz+ken == P) ken--; } if (nex) *nex = ien; if (ney) *ney = jen; if (nez) *nez = ken; PetscFunctionReturn(0); } /* inherits number of vertices from DMDAGetNumElementsGhosted */ static PetscErrorCode DMDAGetNumVerticesGhosted(DM da, PetscInt *nvx, PetscInt *nvy, PetscInt *nvz) { PetscInt ien,jen,ken,dim; PetscErrorCode ierr; PetscFunctionBegin; ierr = DMGetDimension(da,&dim);CHKERRQ(ierr); ierr = DMDAGetNumElementsGhosted(da,&ien,&jen,&ken);CHKERRQ(ierr); ien = ien+1; jen = dim > 1 ? jen+1 : 1; ken = dim > 2 ? ken+1 : 1; if (nvx) *nvx = ien; if (nvy) *nvy = jen; if (nvz) *nvz = ken; PetscFunctionReturn(0); } static PetscErrorCode DMDASampleGLVisFields_Private(PetscObject oX, PetscInt nf, PetscObject oXf[], void *vctx) { DM da; DMDAFieldGLVisViewerCtx *ctx = (DMDAFieldGLVisViewerCtx*)vctx; DMDAGhostedGLVisViewerCtx *dactx; const PetscScalar *array; PetscScalar **arrayf; PetscInt i,f,ii,ien,jen,ken,ie,je,ke,bs,*bss; PetscInt sx,sy,sz,gsx,gsy,gsz,ist,jst,kst,gm,gn,gp; PetscErrorCode ierr; PetscFunctionBegin; ierr = VecGetDM(ctx->xlocal,&da);CHKERRQ(ierr); if (!da) SETERRQ(PetscObjectComm(oX),PETSC_ERR_ARG_WRONG,"Vector not generated from a DMDA"); ierr = DMGetApplicationContext(da,(void**)&dactx);CHKERRQ(ierr); ierr = VecGetBlockSize(ctx->xlocal,&bs);CHKERRQ(ierr); ierr = DMGlobalToLocalBegin(da,(Vec)oX,INSERT_VALUES,ctx->xlocal);CHKERRQ(ierr); ierr = DMGlobalToLocalEnd(da,(Vec)oX,INSERT_VALUES,ctx->xlocal);CHKERRQ(ierr); ierr = DMDAGetNumVerticesGhosted(da,&ien,&jen,&ken);CHKERRQ(ierr); ierr = DMDAGetGhostCorners(da,&gsx,&gsy,&gsz,&gm,&gn,&gp);CHKERRQ(ierr); ierr = DMDAGetCorners(da,&sx,&sy,&sz,NULL,NULL,NULL);CHKERRQ(ierr); if (dactx->ll) { kst = jst = ist = 0; } else { kst = gsz != sz ? 1 : 0; jst = gsy != sy ? 1 : 0; ist = gsx != sx ? 1 : 0; } ierr = PetscMalloc2(nf,&arrayf,nf,&bss);CHKERRQ(ierr); ierr = VecGetArrayRead(ctx->xlocal,&array);CHKERRQ(ierr); for (f=0;fxlocal,&array);CHKERRQ(ierr); ierr = PetscFree2(arrayf,bss);CHKERRQ(ierr); PetscFunctionReturn(0); } PETSC_INTERN PetscErrorCode DMSetUpGLVisViewer_DMDA(PetscObject oda, PetscViewer viewer) { DM da = (DM)oda,daview; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscObjectQuery(oda,"GLVisGraphicsDMDAGhosted",(PetscObject*)&daview);CHKERRQ(ierr); if (!daview) { DMDAGhostedGLVisViewerCtx *dactx; DM dacoord = NULL; Vec xcoor,xcoorl; PetscBool hashocoord = PETSC_FALSE; const PetscInt *lx,*ly,*lz; PetscInt dim,M,N,P,m,n,p,dof,s,i; ierr = PetscNew(&dactx);CHKERRQ(ierr); dactx->ll = PETSC_TRUE; /* default to match elements layout obtained by DMDAGetElements */ ierr = PetscOptionsBegin(PetscObjectComm(oda),oda->prefix,"GLVis PetscViewer DMDA Options","PetscViewer");CHKERRQ(ierr); ierr = PetscOptionsBool("-viewer_glvis_dm_da_ll","Left-looking subdomain view",NULL,dactx->ll,&dactx->ll,NULL);CHKERRQ(ierr); ierr = PetscOptionsEnd();CHKERRQ(ierr); /* Create a properly ghosted DMDA to visualize the mesh and the fields associated with */ ierr = DMDAGetInfo(da,&dim,&M,&N,&P,&m,&n,&p,&dof,&s,NULL,NULL,NULL,NULL);CHKERRQ(ierr); ierr = DMDAGetOwnershipRanges(da,&lx,&ly,&lz);CHKERRQ(ierr); ierr = PetscObjectQuery((PetscObject)da,"_glvis_mesh_coords",(PetscObject*)&xcoor);CHKERRQ(ierr); if (!xcoor) { ierr = DMGetCoordinates(da,&xcoor);CHKERRQ(ierr); } else { hashocoord = PETSC_TRUE; } ierr = PetscInfo(da,"Creating auxilary DMDA for managing GLVis graphics\n");CHKERRQ(ierr); switch (dim) { case 1: ierr = DMDACreate1d(PetscObjectComm((PetscObject)da),DM_BOUNDARY_NONE,M,dof,1,lx,&daview);CHKERRQ(ierr); if (!hashocoord) { ierr = DMDACreate1d(PetscObjectComm((PetscObject)da),DM_BOUNDARY_NONE,M,1,1,lx,&dacoord);CHKERRQ(ierr); } break; case 2: ierr = DMDACreate2d(PetscObjectComm((PetscObject)da),DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,M,N,m,n,dof,1,lx,ly,&daview);CHKERRQ(ierr); if (!hashocoord) { ierr = DMDACreate2d(PetscObjectComm((PetscObject)da),DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,M,N,m,n,2,1,lx,ly,&dacoord);CHKERRQ(ierr); } break; case 3: ierr = DMDACreate3d(PetscObjectComm((PetscObject)da),DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,M,N,P,m,n,p,dof,1,lx,ly,lz,&daview);CHKERRQ(ierr); if (!hashocoord) { ierr = DMDACreate3d(PetscObjectComm((PetscObject)da),DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,M,N,P,m,n,p,3,1,lx,ly,lz,&dacoord);CHKERRQ(ierr); } break; default: SETERRQ1(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Unsupported dimension %D",dim); break; } ierr = DMSetApplicationContext(daview,dactx);CHKERRQ(ierr); ierr = DMSetApplicationContextDestroy(daview,DMDAGhostedDestroyGLVisViewerCtx_Private);CHKERRQ(ierr); ierr = DMSetUp(daview);CHKERRQ(ierr); if (!xcoor) { ierr = DMDASetUniformCoordinates(daview,0.0,1.0,0.0,1.0,0.0,1.0);CHKERRQ(ierr); ierr = DMGetCoordinates(daview,&xcoor);CHKERRQ(ierr); } if (dacoord) { ierr = DMSetUp(dacoord);CHKERRQ(ierr); ierr = DMCreateLocalVector(dacoord,&xcoorl);CHKERRQ(ierr); ierr = DMGlobalToLocalBegin(dacoord,xcoor,INSERT_VALUES,xcoorl);CHKERRQ(ierr); ierr = DMGlobalToLocalEnd(dacoord,xcoor,INSERT_VALUES,xcoorl);CHKERRQ(ierr); ierr = DMDestroy(&dacoord);CHKERRQ(ierr); } else { PetscInt ien,jen,ken,nc,nl,cdof,deg; char fecmesh[64]; ierr = DMDAGetNumElementsGhosted(daview,&ien,&jen,&ken);CHKERRQ(ierr); nc = ien*(jen>0 ? jen : 1)*(ken>0 ? ken : 1); ierr = VecGetLocalSize(xcoor,&nl);CHKERRQ(ierr); if (nc && nl % nc) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Incompatible local coordinate size %D and number of cells %D",nl,nc); ierr = VecDuplicate(xcoor,&xcoorl);CHKERRQ(ierr); ierr = VecCopy(xcoor,xcoorl);CHKERRQ(ierr); ierr = VecSetDM(xcoorl,NULL);CHKERRQ(ierr); cdof = nl/(nc*dim); deg = 1; while (1) { PetscInt degd = 1; for (i=0;i cdof) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cell dofs %D",cdof); if (degd == cdof) break; deg++; } ierr = PetscSNPrintf(fecmesh,sizeof(fecmesh),"FiniteElementCollection: L2_T1_%DD_P%D",dim,deg);CHKERRQ(ierr); ierr = PetscObjectSetName((PetscObject)xcoorl,fecmesh);CHKERRQ(ierr); } /* xcoorl is composed with the ghosted DMDA, the ghosted coordinate DMDA (if present) is only available through this vector */ ierr = PetscObjectCompose((PetscObject)daview,"GLVisGraphicsCoordsGhosted",(PetscObject)xcoorl);CHKERRQ(ierr); ierr = PetscObjectDereference((PetscObject)xcoorl);CHKERRQ(ierr); /* daview is composed with the original DMDA */ ierr = PetscObjectCompose(oda,"GLVisGraphicsDMDAGhosted",(PetscObject)daview);CHKERRQ(ierr); ierr = PetscObjectDereference((PetscObject)daview);CHKERRQ(ierr); } /* customize the viewer if present */ if (viewer) { DMDAFieldGLVisViewerCtx *ctx; DMDAGhostedGLVisViewerCtx *dactx; char fec[64]; Vec xlocal,*Ufield; const char **dafieldname; char **fec_type,**fieldname; PetscInt *nlocal,*bss,*dims; PetscInt dim,M,N,P,dof,s,i,nf; PetscBool bsset; ierr = DMGetApplicationContext(daview,(void**)&dactx);CHKERRQ(ierr); ierr = DMCreateLocalVector(daview,&xlocal);CHKERRQ(ierr); ierr = DMDAGetFieldNames(da,(const char * const **)&dafieldname);CHKERRQ(ierr); ierr = DMDAGetNumVerticesGhosted(daview,&M,&N,&P);CHKERRQ(ierr); ierr = DMDAGetInfo(daview,&dim,NULL,NULL,NULL,NULL,NULL,NULL,&dof,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr); ierr = PetscSNPrintf(fec,sizeof(fec),"FiniteElementCollection: H1_%DD_P1",dim);CHKERRQ(ierr); ierr = PetscMalloc6(dof,&fec_type,dof,&nlocal,dof,&bss,dof,&dims,dof,&fieldname,dof,&Ufield);CHKERRQ(ierr); for (i=0;iprefix,"GLVis PetscViewer DMDA Field options","PetscViewer");CHKERRQ(ierr); ierr = PetscOptionsIntArray("-viewer_glvis_dm_da_bs","Block sizes for subfields; enable vector representation",NULL,bss,&nf,&bsset);CHKERRQ(ierr); ierr = PetscOptionsEnd();CHKERRQ(ierr); if (bsset) { PetscInt t; for (i=0,t=0;ixlocal = xlocal; /* create work vectors */ for (i=0;i 1) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Use single sequential viewers for parallel visualization"); ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); /* get container: determines if a process visualizes is portion of the data or not */ ierr = PetscObjectQuery((PetscObject)viewer,"_glvis_info_container",(PetscObject*)&glvis_container);CHKERRQ(ierr); if (!glvis_container) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing GLVis container"); { PetscViewerGLVisInfo glvis_info; ierr = PetscContainerGetPointer(glvis_container,(void**)&glvis_info);CHKERRQ(ierr); enabled = glvis_info->enabled; fmt = glvis_info->fmt; } /* this can happen if we are calling DMView outside of VecView_GLVis */ ierr = PetscObjectQuery((PetscObject)dm,"GLVisGraphicsDMDAGhosted",(PetscObject*)&da);CHKERRQ(ierr); if (!da) {ierr = DMSetUpGLVisViewer_DMDA((PetscObject)dm,NULL);CHKERRQ(ierr);} ierr = PetscObjectQuery((PetscObject)dm,"GLVisGraphicsDMDAGhosted",(PetscObject*)&da);CHKERRQ(ierr); if (!da) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing GLVis ghosted DMDA"); ierr = DMGetCoordinateDim(da,&sdim);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"MFEM mesh v1.1\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"\ndimension\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"%D\n",dim);CHKERRQ(ierr); if (!enabled) { ierr = PetscViewerASCIIPrintf(viewer,"\nelements\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"\nboundary\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"%D\n",sdim);CHKERRQ(ierr); PetscFunctionReturn(0); } ierr = DMDAGetNumElementsGhosted(da,&ien,&jen,&ken);CHKERRQ(ierr); i = ien; if (dim > 1) i *= jen; if (dim > 2) i *= ken; ierr = PetscViewerASCIIPrintf(viewer,"\nelements\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"%D\n",i);CHKERRQ(ierr); switch (dim) { case 1: for (ie = 0; ie < ien; ie++) { vid[0] = ie; vid[1] = ie+1; mid = 1; /* material id */ cid = 1; /* segment */ ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D %D\n",mid,cid,vid[0],vid[1]);CHKERRQ(ierr); } break; case 2: for (je = 0; je < jen; je++) { for (ie = 0; ie < ien; ie++) { vid[0] = je*(ien+1) + ie; vid[1] = je*(ien+1) + ie+1; vid[2] = (je+1)*(ien+1) + ie+1; vid[3] = (je+1)*(ien+1) + ie; mid = 1; /* material id */ cid = 3; /* quad */ ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D %D %D %D\n",mid,cid,vid[0],vid[1],vid[2],vid[3]);CHKERRQ(ierr); } } break; case 3: for (ke = 0; ke < ken; ke++) { for (je = 0; je < jen; je++) { for (ie = 0; ie < ien; ie++) { vid[0] = ke*(jen+1)*(ien+1) + je*(ien+1) + ie; vid[1] = ke*(jen+1)*(ien+1) + je*(ien+1) + ie+1; vid[2] = ke*(jen+1)*(ien+1) + (je+1)*(ien+1) + ie+1; vid[3] = ke*(jen+1)*(ien+1) + (je+1)*(ien+1) + ie; vid[4] = (ke+1)*(jen+1)*(ien+1) + je*(ien+1) + ie; vid[5] = (ke+1)*(jen+1)*(ien+1) + je*(ien+1) + ie+1; vid[6] = (ke+1)*(jen+1)*(ien+1) + (je+1)*(ien+1) + ie+1; vid[7] = (ke+1)*(jen+1)*(ien+1) + (je+1)*(ien+1) + ie; mid = 1; /* material id */ cid = 5; /* hex */ ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D %D %D %D %D %D %D %D\n",mid,cid,vid[0],vid[1],vid[2],vid[3],vid[4],vid[5],vid[6],vid[7]);CHKERRQ(ierr); } } } break; default: SETERRQ1(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Unsupported dimension %D",dim); break; } ierr = PetscViewerASCIIPrintf(viewer,"\nboundary\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr); /* vertex coordinates */ ierr = PetscObjectQuery((PetscObject)da,"GLVisGraphicsCoordsGhosted",(PetscObject*)&xcoorl);CHKERRQ(ierr); if (!xcoorl) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing GLVis ghosted coords"); ierr = DMDAGetNumVerticesGhosted(da,&ien,&jen,&ken);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"%D\n",ien*jen*ken);CHKERRQ(ierr); ierr = VecGetDM(xcoorl,&cda);CHKERRQ(ierr); ierr = VecGetArrayRead(xcoorl,&array);CHKERRQ(ierr); if (!cda) { /* HO viz */ const char *fecname; PetscInt nc,nl; ierr = PetscObjectGetName((PetscObject)xcoorl,&fecname);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"nodes\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"FiniteElementSpace\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"FiniteElementCollection: %s\n",fecname);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"VDim: %D\n",sdim);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"Ordering: 1\n\n");CHKERRQ(ierr); /*Ordering::byVDIM*/ /* L2 coordinates */ ierr = DMDAGetNumElementsGhosted(da,&ien,&jen,&ken);CHKERRQ(ierr); ierr = VecGetLocalSize(xcoorl,&nl);CHKERRQ(ierr); nc = ien*(jen>0 ? jen : 1)*(ken>0 ? ken : 1); cdof = nl/nc; if (!ien) ien++; if (!jen) jen++; if (!ken) ken++; ist = jst = kst = 0; gm = ien; gn = jen; gp = ken; } else { DMDAGhostedGLVisViewerCtx *dactx; ierr = DMGetApplicationContext(da,(void**)&dactx);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"%D\n",sdim);CHKERRQ(ierr); cdof = sdim; ierr = DMDAGetCorners(da,&sx,&sy,&sz,NULL,NULL,NULL);CHKERRQ(ierr); ierr = DMDAGetGhostCorners(da,&gsx,&gsy,&gsz,&gm,&gn,&gp);CHKERRQ(ierr); if (dactx->ll) { kst = jst = ist = 0; } else { kst = gsz != sz ? 1 : 0; jst = gsy != sy ? 1 : 0; ist = gsx != sx ? 1 : 0; } } for (ke = kst; ke < kst + ken; ke++) { for (je = jst; je < jst + jen; je++) { for (ie = ist; ie < ist + ien; ie++) { PetscInt c; i = ke * gm * gn + je * gm + ie; for (c=0;c