static char help[] = "Test HDF5 input and output.\n\ This exposed a bug with sharing discretizations.\n\n\n"; #include #include #include int main (int argc, char **argv) { DM base, forest, plex; Vec g, g2; PetscSection s; PetscViewer viewer; PetscReal diff; PetscInt min_refine = 2, overlap = 0; PetscInt vStart, vEnd, v; PetscErrorCode ierr; ierr = PetscInitialize(&argc, &argv, NULL, help);if (ierr) return ierr; ierr = DMCreate(PETSC_COMM_WORLD, &base);CHKERRQ(ierr); ierr = DMSetType(base, DMPLEX);CHKERRQ(ierr); ierr = DMSetFromOptions(base);CHKERRQ(ierr); ierr = DMCreate(PETSC_COMM_WORLD, &forest);CHKERRQ(ierr); ierr = DMSetType(forest, DMP4EST);CHKERRQ(ierr); ierr = DMForestSetBaseDM(forest, base);CHKERRQ(ierr); ierr = DMForestSetInitialRefinement(forest, min_refine);CHKERRQ(ierr); ierr = DMForestSetPartitionOverlap(forest, overlap);CHKERRQ(ierr); ierr = DMSetUp(forest);CHKERRQ(ierr); ierr = DMDestroy(&base);CHKERRQ(ierr); ierr = DMViewFromOptions(forest, NULL, "-dm_view");CHKERRQ(ierr); ierr = DMConvert(forest, DMPLEX, &plex);CHKERRQ(ierr); ierr = DMPlexGetDepthStratum(plex, 0, &vStart, &vEnd);CHKERRQ(ierr); ierr = DMDestroy(&plex);CHKERRQ(ierr); ierr = PetscSectionCreate(PetscObjectComm((PetscObject) forest), &s);CHKERRQ(ierr); ierr = PetscSectionSetChart(s, vStart, vEnd);CHKERRQ(ierr); for (v = vStart; v < vEnd; ++v) {ierr = PetscSectionSetDof(s, v, 1);CHKERRQ(ierr);} ierr = PetscSectionSetUp(s);CHKERRQ(ierr); ierr = DMSetLocalSection(forest, s);CHKERRQ(ierr); ierr = PetscSectionDestroy(&s);CHKERRQ(ierr); ierr = DMCreateGlobalVector(forest, &g);CHKERRQ(ierr); ierr = PetscObjectSetName((PetscObject) g, "g");CHKERRQ(ierr); ierr = VecSet(g, 1.0);CHKERRQ(ierr); ierr = PetscViewerHDF5Open(PETSC_COMM_WORLD, "forest.h5", FILE_MODE_WRITE, &viewer);CHKERRQ(ierr); ierr = VecView(g, viewer);CHKERRQ(ierr); ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); ierr = DMCreateGlobalVector(forest, &g2);CHKERRQ(ierr); ierr = PetscObjectSetName((PetscObject) g2, "g");CHKERRQ(ierr); ierr = PetscViewerHDF5Open(PETSC_COMM_WORLD, "forest.h5", FILE_MODE_READ, &viewer);CHKERRQ(ierr); ierr = VecLoad(g2, viewer);CHKERRQ(ierr); ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); /* Check if the data is the same*/ ierr = VecAXPY(g2, -1.0, g);CHKERRQ(ierr); ierr = VecNorm(g2, NORM_INFINITY, &diff);CHKERRQ(ierr); if (diff > PETSC_MACHINE_EPSILON) {ierr = PetscPrintf(PETSC_COMM_WORLD, "Check failed: %g\n", (double) diff);CHKERRQ(ierr);} ierr = VecDestroy(&g);CHKERRQ(ierr); ierr = VecDestroy(&g2);CHKERRQ(ierr); ierr = DMDestroy(&forest);CHKERRQ(ierr); ierr = PetscFinalize(); return ierr; } /*TEST build: requires: hdf5 p4est test: args: -dm_plex_simplex 0 -dm_plex_box_faces 3,3 TEST*/