#include <petsc/private/dmmbimpl.h> /*I  "petscdmmoab.h"   I*/

#include <petscdmmoab.h>

#undef __FUNCT__
#define __FUNCT__ "DMMoabSetFieldVector"
/*@C
  DMMoabSetFieldVector - Sets the vector reference that represents the solution associated
  with a particular field component.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. ifield - the index of the field as set before via DMMoabSetFieldName.
. fvec - the Vector solution corresponding to the field (component)

  Level: intermediate

.keywords: discretization manager, set, component solution

.seealso: DMMoabGetFieldName(), DMMoabSetGlobalFieldVector()
@*/
PetscErrorCode DMMoabSetFieldVector(DM dm, PetscInt ifield, Vec fvec)
{
  DM_Moab        *dmmoab;
  moab::Tag     vtag,ntag;
  const PetscScalar *varray;
  PetscScalar *farray;
  moab::ErrorCode merr;
  PetscErrorCode  ierr;
  std::string tag_name;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  dmmoab = (DM_Moab*)(dm)->data;

  if ((ifield < 0) || (ifield >= dmmoab->numFields)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "The field %d should be positive and less than %d.", ifield, dmmoab->numFields);

  /* Create a tag in MOAB mesh to index and keep track of number of Petsc vec tags */
  merr = dmmoab->mbiface->tag_get_handle(dmmoab->fieldNames[ifield],1,moab::MB_TYPE_DOUBLE,ntag,
                                          moab::MB_TAG_DENSE|moab::MB_TAG_CREAT);MBERRNM(merr);

  ierr = DMMoabGetVecTag(fvec,&vtag);CHKERRQ(ierr);

  merr = dmmoab->mbiface->tag_get_name(vtag, tag_name);
  if (!tag_name.length() && merr !=moab::MB_SUCCESS) {
    ierr = VecGetArrayRead(fvec,&varray);CHKERRQ(ierr);
    /* use the entity handle and the Dof index to set the right value */
    merr = dmmoab->mbiface->tag_set_data(ntag, *dmmoab->vowned, (const void*)varray);MBERRNM(merr);
    ierr = VecRestoreArrayRead(fvec,&varray);CHKERRQ(ierr);
  }
  else {
    ierr = PetscMalloc1(dmmoab->nloc,&farray);CHKERRQ(ierr);
    /* we are using a MOAB Vec - directly copy the tag data to new one */
    merr = dmmoab->mbiface->tag_get_data(vtag, *dmmoab->vowned, (void*)farray);MBERRNM(merr);
    merr = dmmoab->mbiface->tag_set_data(ntag, *dmmoab->vowned, (const void*)farray);MBERRNM(merr);
    /* make sure the parallel exchange for ghosts are done appropriately */
    ierr = PetscFree(farray);CHKERRQ(ierr);
  }
  merr = dmmoab->pcomm->exchange_tags(ntag, *dmmoab->vowned);MBERRNM(merr);
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabSetGlobalFieldVector"
/*@C
  DMMoabSetGlobalFieldVector - Sets the vector reference that represents the global solution associated
  with all fields (components) managed by DM. 
  A useful utility when updating the DM solution after a solve, to be serialized with the mesh for 
  checkpointing purposes.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. fvec - the global Vector solution corresponding to all the fields managed by DM

  Level: intermediate

.keywords: discretization manager, set, component solution

.seealso: DMMoabGetFieldName(), DMMoabSetFieldVector()
@*/
PetscErrorCode DMMoabSetGlobalFieldVector(DM dm, Vec fvec)
{
  DM_Moab        *dmmoab;
  moab::Tag     vtag,ntag;
  const PetscScalar   *rarray;
  PetscScalar   *varray,*farray;
  moab::ErrorCode merr;
  PetscErrorCode  ierr;
  PetscInt i,ifield;
  std::string tag_name;
  moab::Range::iterator iter;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  dmmoab = (DM_Moab*)(dm)->data;

  /* get the Tag corresponding to the global vector - possible that there is no tag associated.. */
  ierr = DMMoabGetVecTag(fvec,&vtag);CHKERRQ(ierr);
  merr = dmmoab->mbiface->tag_get_name(vtag, tag_name);
  ierr = PetscMalloc1(dmmoab->nloc,&farray);CHKERRQ(ierr);
  if (!tag_name.length() && merr !=moab::MB_SUCCESS) {
    /* not a MOAB vector - use VecGetSubVector to get the parts as needed */

    ierr = VecGetArrayRead(fvec,&rarray);CHKERRQ(ierr);
    for (ifield=0; ifield<dmmoab->numFields; ++ifield) {

      /* Create a tag in MOAB mesh to index and keep track of number of Petsc vec tags */
      merr = dmmoab->mbiface->tag_get_handle(dmmoab->fieldNames[ifield],1,moab::MB_TYPE_DOUBLE,ntag,
                                            moab::MB_TAG_DENSE|moab::MB_TAG_CREAT);MBERRNM(merr);

      for(i=0;i<dmmoab->nloc;i++) {
        if (dmmoab->bs == 1)
          farray[i]=rarray[ifield*dmmoab->nloc+i];
        else
          farray[i]=rarray[i*dmmoab->numFields+ifield];
      }

      /* use the entity handle and the Dof index to set the right value */
      merr = dmmoab->mbiface->tag_set_data(ntag, *dmmoab->vowned, (const void*)farray);MBERRNM(merr);
    }
    ierr = VecRestoreArrayRead(fvec,&rarray);CHKERRQ(ierr);
  }
  else {
    ierr = PetscMalloc1(dmmoab->nloc*dmmoab->numFields,&varray);CHKERRQ(ierr);

    /* we are using a MOAB Vec - directly copy the tag data to new one */
    merr = dmmoab->mbiface->tag_get_data(vtag, *dmmoab->vowned, (void*)varray);MBERRNM(merr);
    for (ifield=0; ifield<dmmoab->numFields; ++ifield) {

      /* Create a tag in MOAB mesh to index and keep track of number of Petsc vec tags */
      merr = dmmoab->mbiface->tag_get_handle(dmmoab->fieldNames[ifield],1,moab::MB_TYPE_DOUBLE,ntag,
                                            moab::MB_TAG_DENSE|moab::MB_TAG_CREAT);MBERRNM(merr);

      /* we are using a MOAB Vec - directly copy the tag data to new one */
      for(i=0; i < dmmoab->nloc; i++) {
        if (dmmoab->bs == 1)
          farray[i]=varray[ifield*dmmoab->nloc+i];
        else
          farray[i]=varray[i*dmmoab->numFields+ifield];
      }

      merr = dmmoab->mbiface->tag_set_data(ntag, *dmmoab->vowned, (const void*)farray);MBERRNM(merr);
      /* make sure the parallel exchange for ghosts are done appropriately */
      merr = dmmoab->pcomm->exchange_tags(ntag, *dmmoab->vlocal);MBERRNM(merr);
    }
    ierr = PetscFree(varray);CHKERRQ(ierr);
  }
  ierr = PetscFree(farray);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabSetFieldNames"
/*@C
  DMMoabSetFieldNames - Sets the number of fields and their names to be managed by the DM

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. numFields - the total number of fields
. fields - the array containing the names of each field (component); Can be NULL.

  Level: intermediate

.keywords: discretization manager, set, component name
  
.seealso: DMMoabGetFieldName(), DMMoabSetFieldName()
@*/
PetscErrorCode DMMoabSetFieldNames(DM dm,PetscInt numFields,const char* fields[])
{
  PetscErrorCode ierr;
  PetscInt       i;
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  dmmoab = (DM_Moab*)(dm)->data;

  /* first deallocate the existing field structure */
  if (dmmoab->fieldNames) {
    for(i=0; i<dmmoab->numFields; i++) {
      ierr = PetscFree(dmmoab->fieldNames[i]);CHKERRQ(ierr);
    }
    ierr = PetscFree(dmmoab->fieldNames);CHKERRQ(ierr);
  }

  /* now re-allocate and assign field names  */
  dmmoab->numFields = numFields;
  ierr = PetscMalloc(numFields*sizeof(char*),&dmmoab->fieldNames);CHKERRQ(ierr);
  if (fields) {
    for(i=0; i<dmmoab->numFields; i++) {
      ierr = PetscStrallocpy(fields[i], (char**) &dmmoab->fieldNames[i]);CHKERRQ(ierr);
    }
  }
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetFieldName"
/*@C
  DMMoabGetFieldName - Gets the names of individual field components in multicomponent
  vectors associated with a DMDA.

  Not Collective

  Input Parameter:
+ dm     - the discretization manager object
. field - field number for the DMMoab (0, 1, ... dof-1), where dof indicates the
        number of degrees of freedom per node within the DMMoab

  Output Parameter:
. fieldName - the name of the field (component)

  Level: intermediate

.keywords: discretization manager, get, component name

.seealso: DMMoabSetFieldName(), DMMoabSetFields()
@*/
PetscErrorCode DMMoabGetFieldName(DM dm, PetscInt field, const char **fieldName)
{
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  dmmoab = (DM_Moab*)(dm)->data;
  if ((field < 0) || (field >= dmmoab->numFields)) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "DM field %d should be in [%d, %d)", field, 0, dmmoab->numFields);

  *fieldName = dmmoab->fieldNames[field];
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabSetFieldName"
/*@C
  DMMoabSetFieldName - Sets the name of a field (component) managed by the DM

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. field - the field number
. fieldName - the field (component) name

  Level: intermediate
  Notes: Can only be called after DMMoabSetFields supplied with correct numFields

.keywords: discretization manager, set, component name
  
.seealso: DMMoabGetFieldName(), DMMoabSetFields()
@*/
PetscErrorCode DMMoabSetFieldName(DM dm, PetscInt field, const char *fieldName)
{
  PetscErrorCode ierr;
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  PetscValidCharPointer(fieldName,3);

  dmmoab = (DM_Moab*)(dm)->data;
  if ((field < 0) || (field >= dmmoab->numFields)) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "DM field %d should be in [%d, %d)", field, 0, dmmoab->numFields);

  if (dmmoab->fieldNames[field]) {
    ierr = PetscFree(dmmoab->fieldNames[field]);CHKERRQ(ierr);
  }
  ierr = PetscStrallocpy(fieldName, (char**) &dmmoab->fieldNames[field]);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetFieldDof"
/*@C
  DMMoabGetFieldDof - Gets the global degree-of-freedom of a field (component) defined on a
  particular MOAB EntityHandle.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. point - the MOAB EntityHandle container which holds the field degree-of-freedom values
. field - the field (component) index

  Output Parameter:
+ dof - the global degree-of-freedom index corresponding to the field in the discrete representation (Vec, Mat)

  Level: beginner

.keywords: discretization manager, get, global degree of freedom

.seealso: DMMoabGetFieldDofs(), DMMoabGetFieldDofsLocal()
@*/
PetscErrorCode DMMoabGetFieldDof(DM dm,moab::EntityHandle point,PetscInt field,PetscInt* dof)
{
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  dmmoab = (DM_Moab*)(dm)->data;

  *dof=dmmoab->gidmap[(PetscInt)point];
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetFieldDofs"
/*@C
  DMMoabGetFieldDofs - Gets the global degree-of-freedom of a field (component) defined on an
  array of MOAB EntityHandles.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. npoints - the total number of Entities in the points array
. points - the MOAB EntityHandle container array which holds the field degree-of-freedom values
. field - the field (component) index

  Output Parameter:
+ dof - the global degree-of-freedom index array corresponding to the field in the discrete representation (Vec, Mat)

  Level: intermediate

.keywords: discretization manager, get, global degrees of freedom
  
.seealso: DMMoabGetFieldDof(), DMMoabGetFieldDofsLocal()
@*/
PetscErrorCode DMMoabGetFieldDofs(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt field,PetscInt* dof)
{
  PetscInt        i;
  PetscErrorCode  ierr;
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  PetscValidPointer(points,3);
  dmmoab = (DM_Moab*)(dm)->data;

  if (!dof) {
    ierr = PetscMalloc1(npoints,&dof);CHKERRQ(ierr);
  }

  if (dmmoab->bs > 1) { /* compute the DOF based on local blocking in the fields */
    for (i=0; i<npoints; ++i)
      dof[i] = dmmoab->gidmap[(PetscInt)points[i]]*dmmoab->numFields+field;
  }
  else {
    /* assume all fields have equal distribution; i.e., all fields are either defined on vertices or elements and not on a mixture */
    /* TODO: eliminate the limitation using PetscSection to manage DOFs */
    for (i=0; i<npoints; ++i)
      dof[i] = dmmoab->gidmap[(PetscInt)points[i]]+field*dmmoab->n;
  }
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetFieldDofsLocal"
/*@C
  DMMoabGetFieldDofsLocal - Gets the local degrees-of-freedom of a field (component) defined on an
  array of MOAB EntityHandles.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. npoints - the total number of Entities in the points array
. points - the MOAB EntityHandle container array which holds the field degree-of-freedom values
. field - the field (component) index

  Output Parameter:
+ dof - the local degree-of-freedom index array corresponding to the field in the discrete representation (Vec, Mat)

  Level: intermediate

.keywords: discretization manager, get, local degrees of freedom
  
.seealso: DMMoabGetFieldDof(), DMMoabGetFieldDofs()
@*/
PetscErrorCode DMMoabGetFieldDofsLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt field,PetscInt* dof)
{
  PetscInt i,offset;
  PetscErrorCode  ierr;
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  PetscValidPointer(points,3);
  dmmoab = (DM_Moab*)(dm)->data;

  if (!dof) {
    ierr = PetscMalloc1(npoints,&dof);CHKERRQ(ierr);
  }

  if (dmmoab->bs > 1) { /* compute the DOF based on local blocking in the fields */
    for (i=0; i<npoints; ++i)
      dof[i] = dmmoab->lidmap[(PetscInt)points[i]]*dmmoab->numFields+field;
  }
  else {
    /* assume all fields have equal distribution; i.e., all fields are either defined on vertices or elements and not on a mixture */
    /* TODO: eliminate the limitation using PetscSection to manage DOFs */
    offset = field*dmmoab->n;
    for (i=0; i<npoints; ++i)
      dof[i] = dmmoab->lidmap[(PetscInt)points[i]]+offset;
  }
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetDofs"
/*@C
  DMMoabGetDofs - Gets the global degree-of-freedom for all fields (components) defined on an
  array of MOAB EntityHandles.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. npoints - the total number of Entities in the points array
. points - the MOAB EntityHandle container array which holds the field degree-of-freedom values

  Output Parameter:
+ dof - the global degree-of-freedom index array corresponding to the field in the discrete representation (Vec, Mat)

  Level: intermediate

.keywords: discretization manager, get, global degrees of freedom
  
.seealso: DMMoabGetFieldDofs(), DMMoabGetDofsLocal(), DMMoabGetDofsBlocked()
@*/
PetscErrorCode DMMoabGetDofs(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof)
{
  PetscInt        i,field,offset;  
  PetscErrorCode  ierr;
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  PetscValidPointer(points,3);
  dmmoab = (DM_Moab*)(dm)->data;

  if (!dof) {
    ierr = PetscMalloc1(dmmoab->numFields*npoints,&dof);CHKERRQ(ierr);
  }
  
  if (dmmoab->bs > 1) { /* compute the DOF based on local blocking in the fields */
    for (field=0; field<dmmoab->numFields; ++field) {
      for (i=0; i<npoints; ++i)
        dof[i*dmmoab->numFields+field] = dmmoab->gidmap[(PetscInt)points[i]]*dmmoab->numFields+field;
    }
  }
  else {
    /* assume all fields have equal distribution; i.e., all fields are either defined on vertices or elements and not on a mixture */
    /* TODO: eliminate the limitation using PetscSection to manage DOFs */
    for (field=0; field<dmmoab->numFields; ++field) {
      offset = field*dmmoab->n;
      for (i=0; i<npoints; ++i)
        dof[i*dmmoab->numFields+field] = dmmoab->gidmap[(PetscInt)points[i]]+offset;
    }
  }
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetDofsLocal"
/*@C
  DMMoabGetDofsLocal - Gets the local degree-of-freedom for all fields (components) defined on an
  array of MOAB EntityHandles.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. npoints - the total number of Entities in the points array
. points - the MOAB EntityHandle container array which holds the field degree-of-freedom values

  Output Parameter:
+ dof - the local degree-of-freedom index array corresponding to the field in the discrete representation (Vec, Mat)

  Level: intermediate

.keywords: discretization manager, get, global degrees of freedom
  
.seealso: DMMoabGetFieldDofs(), DMMoabGetDofs(), DMMoabGetDofsBlocked()
@*/
PetscErrorCode DMMoabGetDofsLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof)
{
  PetscInt        i,field,offset;
  PetscErrorCode  ierr;
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  PetscValidPointer(points,3);
  dmmoab = (DM_Moab*)(dm)->data;

  if (!dof) {
    ierr = PetscMalloc1(dmmoab->numFields*npoints,&dof);CHKERRQ(ierr);
  }

  if (dmmoab->bs > 1) { /* compute the DOF based on local blocking in the fields */
    for (field=0; field<dmmoab->numFields; ++field) {
      for (i=0; i<npoints; ++i)
        dof[i*dmmoab->numFields+field] = dmmoab->lidmap[(PetscInt)points[i]]*dmmoab->numFields+field;
    }
  }
  else {
    /* assume all fields have equal distribution; i.e., all fields are either defined on vertices or elements and not on a mixture */
    /* TODO: eliminate the limitation using PetscSection to manage DOFs */
    for (field=0; field<dmmoab->numFields; ++field) {
      offset = field*dmmoab->n;
      for (i=0; i<npoints; ++i)
        dof[i*dmmoab->numFields+field] = dmmoab->lidmap[(PetscInt)points[i]]+offset;
    }
  }
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetDofsBlocked"
/*@C
  DMMoabGetDofsBlocked - Gets the global degree-of-freedom for the first field (component) defined on an
  array of MOAB EntityHandles. It is useful when performing Blocked(Get/Set) methods in computation
  of element residuals and assembly of the discrete systems when all fields are co-located.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. npoints - the total number of Entities in the points array
. points - the MOAB EntityHandle container array which holds the field degree-of-freedom values

  Output Parameter:
+ dof - the blocked global degree-of-freedom index array in the discrete representation (Vec, Mat)

  Level: intermediate

.keywords: discretization manager, get, global degrees of freedom
  
.seealso: DMMoabGetDofsLocal(), DMMoabGetDofs(), DMMoabGetDofsBlockedLocal()
@*/
PetscErrorCode DMMoabGetDofsBlocked(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof)
{
  PetscInt        i;
  DM_Moab        *dmmoab;
  PetscErrorCode  ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  PetscValidPointer(points,2);
  dmmoab = (DM_Moab*)(dm)->data;

  if (!dof) {
    ierr = PetscMalloc1(npoints,&dof);CHKERRQ(ierr);
  }

  for (i=0; i<npoints; ++i) {
    dof[i]=dmmoab->gidmap[(PetscInt)points[i]];
  }
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetDofsBlockedLocal"
/*@C
  DMMoabGetDofsBlockedLocal - Gets the local degree-of-freedom for the first field (component) defined on an
  array of MOAB EntityHandles. It is useful when performing local Blocked(Get/Set) methods in computation
  of element residuals and assembly of the discrete systems when all fields are co-located.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object
. npoints - the total number of Entities in the points array
. points - the MOAB EntityHandle container array which holds the field degree-of-freedom values

  Output Parameter:
+ dof - the blocked local degree-of-freedom index array in the discrete representation (Vec, Mat)

  Level: intermediate

.keywords: discretization manager, get, global degrees of freedom
  
.seealso: DMMoabGetDofsLocal(), DMMoabGetDofs(), DMMoabGetDofsBlockedLocal()
@*/
PetscErrorCode DMMoabGetDofsBlockedLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof)
{
  PetscInt        i;
  DM_Moab        *dmmoab;
  PetscErrorCode  ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  PetscValidPointer(points,2);
  dmmoab = (DM_Moab*)(dm)->data;

  if (!dof) {
    ierr = PetscMalloc1(npoints,&dof);CHKERRQ(ierr);
  }

  for (i=0; i<npoints; ++i)
    dof[i] = dmmoab->lidmap[(PetscInt)points[i]];
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetVertexDofsBlocked"
/*@C
  DMMoabGetVertexDofsBlocked - Gets the global degree-of-freedom for the first field (component) defined on an
  array of locally owned MOAB mesh vertices. It's utility is when performing Finite-Difference type calculations
  where vertex traversal is faster than element-wise assembly that is typically done in FEM calculations.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object

  Output Parameter:
+ dof - the blocked global degree-of-freedom index array in the discrete representation (Vec, Mat) that is vertex-based based on local numbering

  Level: intermediate

.keywords: discretization manager, get, blocked degrees of freedom
  
.seealso: DMMoabGetVertexDofsBlockedLocal(), DMMoabGetDofsBlocked(), DMMoabGetDofsBlockedLocal()
@*/
PetscErrorCode DMMoabGetVertexDofsBlocked(DM dm,PetscInt** dof)
{
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  dmmoab = (DM_Moab*)(dm)->data;

  *dof = dmmoab->gidmap;
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMMoabGetVertexDofsBlockedLocal"
/*@C
  DMMoabGetVertexDofsBlockedLocal - Gets the local degree-of-freedom for the first field (component) defined on an
  array of locally owned MOAB mesh vertices. It's utility is when performing Finite-Difference type calculations
  where vertex traversal is faster than element-wise assembly that is typically done in FEM calculations.

  Not Collective

  Input Parameters:
+ dm     - the discretization manager object

  Output Parameter:
+ dof - the blocked local degree-of-freedom index array in the discrete representation (Vec, Mat) that is vertex-based based on local numbering

  Level: intermediate

.keywords: discretization manager, get, blocked degrees of freedom
  
.seealso: DMMoabGetVertexDofsBlocked(), DMMoabGetDofsBlocked(), DMMoabGetDofsBlockedLocal()
@*/
PetscErrorCode DMMoabGetVertexDofsBlockedLocal(DM dm,PetscInt** dof)
{
  DM_Moab        *dmmoab;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  PetscValidPointer(dof,2);
  dmmoab = (DM_Moab*)(dm)->data;

  *dof = dmmoab->lidmap;
  PetscFunctionReturn(0);
}