#include /*I "petscdmmoab.h" I*/ #include static PetscErrorCode DMMoab_GetWriteOptions_Private(PetscInt fsetid, PetscInt numproc, PetscInt dim, MoabWriteMode mode, PetscInt dbglevel, const char *dm_opts, const char *extra_opts, const char **write_opts) { char *wopts; char wopts_par[PETSC_MAX_PATH_LEN]; char wopts_parid[PETSC_MAX_PATH_LEN]; char wopts_dbg[PETSC_MAX_PATH_LEN]; PetscFunctionBegin; PetscCall(PetscMalloc1(PETSC_MAX_PATH_LEN, &wopts)); PetscCall(PetscMemzero(&wopts_par, PETSC_MAX_PATH_LEN)); PetscCall(PetscMemzero(&wopts_parid, PETSC_MAX_PATH_LEN)); PetscCall(PetscMemzero(&wopts_dbg, PETSC_MAX_PATH_LEN)); // do parallel read unless only one processor if (numproc > 1) { PetscCall(PetscSNPrintf(wopts_par, PETSC_MAX_PATH_LEN, "PARALLEL=%s;", MoabWriteModes[mode])); if (fsetid >= 0) PetscCall(PetscSNPrintf(wopts_parid, PETSC_MAX_PATH_LEN, "PARALLEL_COMM=%d;", fsetid)); } if (dbglevel) PetscCall(PetscSNPrintf(wopts_dbg, PETSC_MAX_PATH_LEN, "CPUTIME;DEBUG_IO=%d;", dbglevel)); PetscCall(PetscSNPrintf(wopts, PETSC_MAX_PATH_LEN, "%s%s%s%s%s", wopts_par, wopts_parid, wopts_dbg, extra_opts ? extra_opts : "", dm_opts ? dm_opts : "")); *write_opts = wopts; PetscFunctionReturn(PETSC_SUCCESS); } /*@C DMMoabOutput - Output the solution vectors that are stored in the DMMoab object as tags along with the complete mesh data structure in the native H5M or VTK format . Collective Input Parameters: + dm - the discretization manager object containing solution in MOAB tags. . filename - the name of the output file: e.g., poisson.h5m - usrwriteopts - the parallel write options needed for serializing a MOAB mesh database. Can be `NULL`. Level: intermediate Notes: The H5M output file can be visualized directly with Paraview (if compiled with appropriate plugin) or converted with MOAB/tools/mbconvert to a VTK or Exodus file. This routine can also be used for check-pointing purposes to store a complete history of the solution along with any other necessary data to restart computations. .seealso: `DMMoabLoadFromFile()`, `DMMoabSetGlobalFieldVector()` @*/ PetscErrorCode DMMoabOutput(DM dm, const char *filename, const char *usrwriteopts) { DM_Moab *dmmoab; const char *writeopts; PetscBool isftype; moab::ErrorCode merr; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); dmmoab = (DM_Moab *)dm->data; PetscCall(PetscStrendswith(filename, "h5m", &isftype)); /* add mesh loading options specific to the DM */ if (isftype) { #ifdef MOAB_HAVE_MPI PetscCall(DMMoab_GetWriteOptions_Private(dmmoab->pcomm->get_id(), dmmoab->pcomm->size(), dmmoab->dim, dmmoab->write_mode, dmmoab->rw_dbglevel, dmmoab->extra_write_options, usrwriteopts, &writeopts)); #else PetscCall(DMMoab_GetWriteOptions_Private(0, 1, dmmoab->dim, dmmoab->write_mode, dmmoab->rw_dbglevel, dmmoab->extra_write_options, usrwriteopts, &writeopts)); #endif PetscCall(PetscInfo(dm, "Writing file %s with options: %s\n", filename, writeopts)); } else { writeopts = NULL; } /* output file, using parallel write */ merr = dmmoab->mbiface->write_file(filename, NULL, writeopts, &dmmoab->fileset, 1); MBERRVM(dmmoab->mbiface, "Writing output of DMMoab failed.", merr); PetscCall(PetscFree(writeopts)); PetscFunctionReturn(PETSC_SUCCESS); }