#include /*I "petscdmmoab.h" I*/ #include #include #include #define USE_NATIVE_PETSCVEC /* declare some private DMMoab specific overrides */ static PetscErrorCode DMCreateVector_Moab_Private(DM, moab::Tag, const moab::Range *, PetscBool, PetscBool, Vec *); static PetscErrorCode DMVecCtxDestroy_Moab(void **); static PetscErrorCode DMVecDuplicate_Moab(Vec, Vec *); #ifdef MOAB_HAVE_MPI static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *, moab::ParallelComm *, char **); #else static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *, char **); #endif /*@C DMMoabCreateVector - Create a Vec from either an existing tag, or a specified tag size, and a range of entities Collective Input Parameters: + dm - The DMMoab object being set . tag - If non-zero, block size will be taken from the tag size . range - If non-empty, Vec corresponds to these entities, otherwise to the entities set on the DMMoab . is_global_vec - If true, this is a local representation of the Vec (including ghosts in parallel), otherwise a truly parallel one - destroy_tag - If true, MOAB tag is destroyed with Vec, otherwise it is left on MOAB Output Parameter: . vec - The created vector Level: beginner .seealso: `VecCreate()` @*/ PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag, const moab::Range *range, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) { PetscFunctionBegin; PetscCheck(tag || (range && !range->empty()), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Both tag and range cannot be null."); PetscCall(DMCreateVector_Moab_Private(dm, tag, range, is_global_vec, destroy_tag, vec)); PetscFunctionReturn(PETSC_SUCCESS); } /*@C DMMoabGetVecTag - Get the MOAB tag associated with this Vec Input Parameter: . vec - Vec being queried Output Parameter: . tag - Tag associated with this Vec. NULL if vec is a native PETSc Vec. Level: beginner .seealso: `DMMoabCreateVector()`, `DMMoabGetVecRange()` @*/ PetscErrorCode DMMoabGetVecTag(Vec vec, moab::Tag *tag) { PetscContainer moabdata; Vec_MOAB *vmoab; PetscFunctionBegin; PetscAssertPointer(tag, 2); /* Get the MOAB private data */ PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); *tag = vmoab->tag; PetscFunctionReturn(PETSC_SUCCESS); } /*@C DMMoabGetVecRange - Get the MOAB entities associated with this Vec Input Parameter: . vec - Vec being queried Output Parameter: . range - Entities associated with this Vec. NULL if vec is a native PETSc Vec. Level: beginner .seealso: `DMMoabCreateVector()`, `DMMoabGetVecTag()` @*/ PetscErrorCode DMMoabGetVecRange(Vec vec, moab::Range *range) { PetscContainer moabdata; Vec_MOAB *vmoab; PetscFunctionBegin; PetscAssertPointer(range, 2); /* Get the MOAB private data handle */ PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); *range = *vmoab->tag_range; PetscFunctionReturn(PETSC_SUCCESS); } /*@C DMMoabVecGetArray - Returns the writable direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities Collective Input Parameters: + dm - The DMMoab object being set - vec - The Vector whose underlying data is requested Output Parameter: . array - The local data array Level: intermediate .seealso: `DMMoabVecRestoreArray()`, `DMMoabVecGetArrayRead()`, `DMMoabVecRestoreArrayRead()` @*/ PetscErrorCode DMMoabVecGetArray(DM dm, Vec vec, void *array) { DM_Moab *dmmoab; moab::ErrorCode merr; PetscInt count, i, f; moab::Tag vtag; PetscScalar **varray; PetscScalar *marray; PetscContainer moabdata; Vec_MOAB *vmoab, *xmoab; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); PetscAssertPointer(array, 3); dmmoab = (DM_Moab *)dm->data; /* Get the Vec_MOAB struct for the original vector */ PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); /* Get the real scalar array handle */ varray = reinterpret_cast(array); if (vmoab->is_native_vec) { /* get the local representation of the arrays from Vectors */ PetscCall(DMGetLocalVector(dm, &vmoab->local)); PetscCall(DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local)); PetscCall(DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local)); /* Get the Vec_MOAB struct for the original vector */ PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); /* get the local representation of the arrays from Vectors */ PetscCall(VecGhostGetLocalForm(vmoab->local, &xmoab->local)); PetscCall(VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); PetscCall(VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); PetscCall(VecGetArray(xmoab->local, varray)); } else { /* Get the MOAB private data */ PetscCall(DMMoabGetVecTag(vec, &vtag)); #ifdef MOAB_HAVE_MPI /* exchange the data into ghost cells first */ merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); MBERRNM(merr); #endif PetscCall(PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray)); /* Get the array data for local entities */ merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast(marray), false); MBERRNM(merr); PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); i = 0; for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f] = marray[i]; //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; } } PetscFunctionReturn(PETSC_SUCCESS); } /*@C DMMoabVecRestoreArray - Restores the writable direct access array obtained via DMMoabVecGetArray Collective Input Parameters: + dm - The DMMoab object being set . vec - The Vector whose underlying data is requested - array - The local data array Level: intermediate .seealso: `DMMoabVecGetArray()`, `DMMoabVecGetArrayRead()`, `DMMoabVecRestoreArrayRead()` @*/ PetscErrorCode DMMoabVecRestoreArray(DM dm, Vec vec, void *array) { DM_Moab *dmmoab; moab::ErrorCode merr; moab::Tag vtag; PetscInt count, i, f; PetscScalar **varray; PetscScalar *marray; PetscContainer moabdata; Vec_MOAB *vmoab, *xmoab; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); PetscAssertPointer(array, 3); dmmoab = (DM_Moab *)dm->data; /* Get the Vec_MOAB struct for the original vector */ PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); /* Get the real scalar array handle */ varray = reinterpret_cast(array); if (vmoab->is_native_vec) { /* Get the Vec_MOAB struct for the original vector */ PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); /* get the local representation of the arrays from Vectors */ PetscCall(VecRestoreArray(xmoab->local, varray)); PetscCall(VecGhostUpdateBegin(vmoab->local, ADD_VALUES, SCATTER_REVERSE)); PetscCall(VecGhostUpdateEnd(vmoab->local, ADD_VALUES, SCATTER_REVERSE)); PetscCall(VecGhostRestoreLocalForm(vmoab->local, &xmoab->local)); /* restore local pieces */ PetscCall(DMLocalToGlobalBegin(dm, vmoab->local, INSERT_VALUES, vec)); PetscCall(DMLocalToGlobalEnd(dm, vmoab->local, INSERT_VALUES, vec)); PetscCall(DMRestoreLocalVector(dm, &vmoab->local)); } else { /* Get the MOAB private data */ PetscCall(DMMoabGetVecTag(vec, &vtag)); /* Get the array data for local entities */ merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast(marray), false); MBERRNM(merr); PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); i = 0; for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { for (f = 0; f < dmmoab->numFields; f++, i++) marray[i] = (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f]; //marray[i] = (*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]; } #ifdef MOAB_HAVE_MPI /* reduce the tags correctly -> should probably let the user choose how to reduce in the future For all FEM residual based assembly calculations, MPI_SUM should serve well */ merr = dmmoab->pcomm->reduce_tags(vtag, MPI_SUM, *dmmoab->vlocal); MBERRV(dmmoab->mbiface, merr); #endif PetscCall(PetscFree(*varray)); } PetscFunctionReturn(PETSC_SUCCESS); } /*@C DMMoabVecGetArrayRead - Returns the read-only direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities Collective Input Parameters: + dm - The DMMoab object being set - vec - The Vector whose underlying data is requested Output Parameter: . array - The local data array Level: intermediate .seealso: `DMMoabVecRestoreArrayRead()`, `DMMoabVecGetArray()`, `DMMoabVecRestoreArray()` @*/ PetscErrorCode DMMoabVecGetArrayRead(DM dm, Vec vec, void *array) { DM_Moab *dmmoab; moab::ErrorCode merr; PetscInt count, i, f; moab::Tag vtag; PetscScalar **varray; PetscScalar *marray; PetscContainer moabdata; Vec_MOAB *vmoab, *xmoab; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); PetscAssertPointer(array, 3); dmmoab = (DM_Moab *)dm->data; /* Get the Vec_MOAB struct for the original vector */ PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); /* Get the real scalar array handle */ varray = reinterpret_cast(array); if (vmoab->is_native_vec) { /* get the local representation of the arrays from Vectors */ PetscCall(DMGetLocalVector(dm, &vmoab->local)); PetscCall(DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local)); PetscCall(DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local)); /* Get the Vec_MOAB struct for the original vector */ PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); /* get the local representation of the arrays from Vectors */ PetscCall(VecGhostGetLocalForm(vmoab->local, &xmoab->local)); PetscCall(VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); PetscCall(VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); PetscCall(VecGetArray(xmoab->local, varray)); } else { /* Get the MOAB private data */ PetscCall(DMMoabGetVecTag(vec, &vtag)); #ifdef MOAB_HAVE_MPI /* exchange the data into ghost cells first */ merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); MBERRNM(merr); #endif PetscCall(PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray)); /* Get the array data for local entities */ merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast(marray), false); MBERRNM(merr); PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); i = 0; for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f] = marray[i]; //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; } } PetscFunctionReturn(PETSC_SUCCESS); } /*@C DMMoabVecRestoreArrayRead - Restores the read-only direct access array obtained via DMMoabVecGetArray Collective Input Parameters: + dm - The DMMoab object being set . vec - The Vector whose underlying data is requested - array - The local data array Level: intermediate .seealso: `DMMoabVecGetArrayRead()`, `DMMoabVecGetArray()`, `DMMoabVecRestoreArray()` @*/ PetscErrorCode DMMoabVecRestoreArrayRead(DM dm, Vec vec, void *array) { PetscScalar **varray; PetscContainer moabdata; Vec_MOAB *vmoab, *xmoab; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); PetscAssertPointer(array, 3); /* Get the Vec_MOAB struct for the original vector */ PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); /* Get the real scalar array handle */ varray = reinterpret_cast(array); if (vmoab->is_native_vec) { /* Get the Vec_MOAB struct for the original vector */ PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); /* restore the local representation of the arrays from Vectors */ PetscCall(VecRestoreArray(xmoab->local, varray)); PetscCall(VecGhostRestoreLocalForm(vmoab->local, &xmoab->local)); /* restore local pieces */ PetscCall(DMRestoreLocalVector(dm, &vmoab->local)); } else { /* Nothing to do but just free the memory allocated before */ PetscCall(PetscFree(*varray)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode DMCreateVector_Moab_Private(DM dm, moab::Tag tag, const moab::Range *userrange, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) { moab::ErrorCode merr; PetscBool is_newtag; const moab::Range *range; PetscInt count, lnative_vec, gnative_vec; std::string ttname; PetscScalar *data_ptr, *defaultvals; Vec_MOAB *vmoab; DM_Moab *dmmoab = (DM_Moab *)dm->data; #ifdef MOAB_HAVE_MPI moab::ParallelComm *pcomm = dmmoab->pcomm; #endif moab::Interface *mbiface = dmmoab->mbiface; PetscFunctionBegin; PetscCheck(sizeof(PetscReal) == sizeof(PetscScalar), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "MOAB tags only support Real types (Complex-type unsupported)"); if (!userrange) range = dmmoab->vowned; else range = userrange; PetscCheck(range, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "Input range cannot be empty or call DMSetUp first."); #ifndef USE_NATIVE_PETSCVEC /* If the tag data is in a single sequence, use PETSc native vector since tag_iterate isn't useful anymore */ lnative_vec = (range->psize() - 1); #else lnative_vec = 1; /* NOTE: Testing PETSc vector: will force to create native vector all the time */ // lnative_vec=0; /* NOTE: Testing MOAB vector: will force to create MOAB tag_iterate based vector all the time */ #endif #ifdef MOAB_HAVE_MPI PetscCallMPI(MPIU_Allreduce(&lnative_vec, &gnative_vec, 1, MPI_INT, MPI_MAX, ((PetscObject)dm)->comm)); #else gnative_vec = lnative_vec; #endif /* Create the MOAB internal data object */ PetscCall(PetscNew(&vmoab)); vmoab->is_native_vec = (gnative_vec > 0 ? PETSC_TRUE : PETSC_FALSE); if (!vmoab->is_native_vec) { merr = moab::MB_SUCCESS; if (tag != 0) merr = mbiface->tag_get_name(tag, ttname); if (!ttname.length() || merr != moab::MB_SUCCESS) { /* get the new name for the anonymous MOABVec -> the tag_name will be destroyed along with Tag */ char *tag_name = NULL; #ifdef MOAB_HAVE_MPI PetscCall(DMVecCreateTagName_Moab_Private(mbiface, pcomm, &tag_name)); #else PetscCall(DMVecCreateTagName_Moab_Private(mbiface, &tag_name)); #endif is_newtag = PETSC_TRUE; /* Create the default value for the tag (all zeros) */ PetscCall(PetscCalloc1(dmmoab->numFields, &defaultvals)); /* Create the tag */ merr = mbiface->tag_get_handle(tag_name, dmmoab->numFields, moab::MB_TYPE_DOUBLE, tag, moab::MB_TAG_DENSE | moab::MB_TAG_CREAT, defaultvals); MBERRNM(merr); PetscCall(PetscFree(tag_name)); PetscCall(PetscFree(defaultvals)); } else { /* Make sure the tag data is of type "double" */ moab::DataType tag_type; merr = mbiface->tag_get_data_type(tag, tag_type); MBERRNM(merr); PetscCheck(tag_type == moab::MB_TYPE_DOUBLE, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Tag data type must be MB_TYPE_DOUBLE"); is_newtag = destroy_tag; } vmoab->tag = tag; vmoab->new_tag = is_newtag; } vmoab->mbiface = mbiface; #ifdef MOAB_HAVE_MPI vmoab->pcomm = pcomm; #endif vmoab->is_global_vec = is_global_vec; vmoab->tag_size = dmmoab->bs; if (vmoab->is_native_vec) { /* Create the PETSc Vector directly and attach our functions accordingly */ if (!is_global_vec) { /* This is an MPI Vector with ghosted padding */ PetscCall(VecCreateGhostBlock(((PetscObject)dm)->comm, dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], vec)); } else { /* This is an MPI/SEQ Vector */ PetscCall(VecCreate(((PetscObject)dm)->comm, vec)); PetscCall(VecSetSizes(*vec, dmmoab->numFields * dmmoab->nloc, PETSC_DECIDE)); PetscCall(VecSetBlockSize(*vec, dmmoab->bs)); PetscCall(VecSetType(*vec, VECMPI)); } } else { /* Call tag_iterate. This will cause MOAB to allocate memory for the tag data if it hasn't already happened */ merr = mbiface->tag_iterate(tag, range->begin(), range->end(), count, (void *&)data_ptr); MBERRNM(merr); /* set the reference for vector range */ vmoab->tag_range = new moab::Range(*range); merr = mbiface->tag_get_length(tag, dmmoab->numFields); MBERRNM(merr); /* Create the PETSc Vector Query MOAB mesh to check if there are any ghosted entities -> if we do, create a ghosted vector to map correctly to the same layout -> else, create a non-ghosted parallel vector */ if (!is_global_vec) { /* This is an MPI Vector with ghosted padding */ PetscCall(VecCreateGhostBlockWithArray(((PetscObject)dm)->comm, dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], data_ptr, vec)); } else { /* This is an MPI Vector without ghosted padding */ PetscCall(VecCreateMPIWithArray(((PetscObject)dm)->comm, dmmoab->bs, dmmoab->numFields * range->size(), PETSC_DECIDE, data_ptr, vec)); } } PetscCall(VecSetFromOptions(*vec)); /* create a container and store the internal MOAB data for faster access based on Entities etc */ PetscCall(PetscObjectContainerCompose((PetscObject)*vec, "MOABData", vmoab, DMVecCtxDestroy_Moab)); (*vec)->ops->duplicate = DMVecDuplicate_Moab; /* Vector created, manually set local to global mapping */ if (dmmoab->ltog_map) PetscCall(VecSetLocalToGlobalMapping(*vec, dmmoab->ltog_map)); /* set the DM reference to the vector */ PetscCall(VecSetDM(*vec, dm)); PetscFunctionReturn(PETSC_SUCCESS); } /* DMVecCreateTagName_Moab_Private * * Creates a unique tag name that will be shared across processes. If * pcomm is NULL, then this is a serial vector. A unique tag name * will be returned in tag_name in either case. * * The tag names have the format _PETSC_VEC_N where N is some integer. * * NOTE: The tag_name is allocated in this routine; The user needs to free * the character array. */ #ifdef MOAB_HAVE_MPI PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, moab::ParallelComm *pcomm, char **tag_name) #else static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, char **tag_name) #endif { moab::ErrorCode mberr; PetscInt n, global_n; moab::Tag indexTag; PetscFunctionBegin; const char *PVEC_PREFIX = "__PETSC_VEC_"; PetscCall(PetscMalloc1(PETSC_MAX_PATH_LEN, tag_name)); moab::EntityHandle rootset = mbiface->get_root_set(); /* Check to see if there are any PETSc vectors defined */ /* Create a tag in MOAB mesh to index and keep track of number of PETSc vec tags */ mberr = mbiface->tag_get_handle("__PETSC_VECS__", 1, moab::MB_TYPE_INTEGER, indexTag, moab::MB_TAG_SPARSE | moab::MB_TAG_CREAT, 0); MBERRNM(mberr); mberr = mbiface->tag_get_data(indexTag, &rootset, 1, &n); if (mberr == moab::MB_TAG_NOT_FOUND) n = 0; /* this is the first temporary vector */ else MBERRNM(mberr); /* increment the new value of n */ ++n; #ifdef MOAB_HAVE_MPI /* Make sure that n is consistent across all processes */ PetscCallMPI(MPIU_Allreduce(&n, &global_n, 1, MPI_INT, MPI_MAX, pcomm->comm())); #else global_n = n; #endif /* Set the new name accordingly and return */ PetscCall(PetscSNPrintf(*tag_name, PETSC_MAX_PATH_LEN - 1, "%s_%" PetscInt_FMT, PVEC_PREFIX, global_n)); mberr = mbiface->tag_set_data(indexTag, &rootset, 1, (const void *)&global_n); MBERRNM(mberr); PetscFunctionReturn(PETSC_SUCCESS); } PETSC_EXTERN PetscErrorCode DMCreateGlobalVector_Moab(DM dm, Vec *gvec) { DM_Moab *dmmoab = (DM_Moab *)dm->data; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscAssertPointer(gvec, 2); PetscCall(DMCreateVector_Moab_Private(dm, NULL, dmmoab->vowned, PETSC_TRUE, PETSC_TRUE, gvec)); PetscFunctionReturn(PETSC_SUCCESS); } PETSC_EXTERN PetscErrorCode DMCreateLocalVector_Moab(DM dm, Vec *lvec) { DM_Moab *dmmoab = (DM_Moab *)dm->data; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscAssertPointer(lvec, 2); PetscCall(DMCreateVector_Moab_Private(dm, NULL, dmmoab->vlocal, PETSC_FALSE, PETSC_TRUE, lvec)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode DMVecDuplicate_Moab(Vec x, Vec *y) { DM dm; PetscContainer moabdata; Vec_MOAB *vmoab; PetscFunctionBegin; PetscValidHeaderSpecific(x, VEC_CLASSID, 1); PetscAssertPointer(y, 2); /* Get the Vec_MOAB struct for the original vector */ PetscCall(PetscObjectQuery((PetscObject)x, "MOABData", (PetscObject *)&moabdata)); PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); PetscCall(VecGetDM(x, &dm)); PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscCall(DMCreateVector_Moab_Private(dm, NULL, vmoab->tag_range, vmoab->is_global_vec, PETSC_TRUE, y)); PetscCall(VecSetDM(*y, dm)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode DMVecCtxDestroy_Moab(void **user) { Vec_MOAB *vmoab = (Vec_MOAB *)*user; moab::ErrorCode merr; PetscFunctionBegin; if (vmoab->new_tag && vmoab->tag) { /* Tag was created via a call to VecDuplicate, delete the underlying tag in MOAB */ merr = vmoab->mbiface->tag_delete(vmoab->tag); MBERRNM(merr); } delete vmoab->tag_range; vmoab->tag = NULL; vmoab->mbiface = NULL; #ifdef MOAB_HAVE_MPI vmoab->pcomm = NULL; #endif PetscCall(PetscFree(vmoab)); PetscFunctionReturn(PETSC_SUCCESS); } PETSC_EXTERN PetscErrorCode DMGlobalToLocalBegin_Moab(DM dm, Vec g, InsertMode mode, Vec l) { DM_Moab *dmmoab = (DM_Moab *)dm->data; PetscFunctionBegin; PetscCall(VecScatterBegin(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE)); PetscFunctionReturn(PETSC_SUCCESS); } PETSC_EXTERN PetscErrorCode DMGlobalToLocalEnd_Moab(DM dm, Vec g, InsertMode mode, Vec l) { DM_Moab *dmmoab = (DM_Moab *)dm->data; PetscFunctionBegin; PetscCall(VecScatterEnd(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE)); PetscFunctionReturn(PETSC_SUCCESS); } PETSC_EXTERN PetscErrorCode DMLocalToGlobalBegin_Moab(DM dm, Vec l, InsertMode mode, Vec g) { DM_Moab *dmmoab = (DM_Moab *)dm->data; PetscFunctionBegin; PetscCall(VecScatterBegin(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD)); PetscFunctionReturn(PETSC_SUCCESS); } PETSC_EXTERN PetscErrorCode DMLocalToGlobalEnd_Moab(DM dm, Vec l, InsertMode mode, Vec g) { DM_Moab *dmmoab = (DM_Moab *)dm->data; PetscFunctionBegin; PetscCall(VecScatterEnd(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD)); PetscFunctionReturn(PETSC_SUCCESS); }