#include /*I "petscdmmoab.h" I*/ #include #include #include #define USE_NATIVE_PETSCVEC /* declare some private DMMoab specific overrides */ static PetscErrorCode DMCreateVector_Moab_Private(DM dm,moab::Tag tag,const moab::Range* userrange,PetscBool is_global_vec,PetscBool destroy_tag,Vec *vec); static PetscErrorCode DMVecUserDestroy_Moab(void *user); static PetscErrorCode DMVecDuplicate_Moab(Vec x,Vec *y); #ifdef MOAB_HAVE_MPI static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface,moab::ParallelComm *pcomm,char** tag_name); #else static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface,char** tag_name); #endif /*@C DMMoabCreateVector - Create a Vec from either an existing tag, or a specified tag size, and a range of entities Collective Input Parameters: + dm - The DMMoab object being set . tag - If non-zero, block size will be taken from the tag size . range - If non-empty, Vec corresponds to these entities, otherwise to the entities set on the DMMoab . is_global_vec - If true, this is a local representation of the Vec (including ghosts in parallel), otherwise a truly parallel one - destroy_tag - If true, MOAB tag is destroyed with Vec, otherwise it is left on MOAB Output Parameter: . vec - The created vector Level: beginner .seealso: VecCreate() @*/ PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag, const moab::Range* range, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) { PetscErrorCode ierr; PetscFunctionBegin; if (!tag && (!range || range->empty())) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Both tag and range cannot be null."); ierr = DMCreateVector_Moab_Private(dm, tag, range, is_global_vec, destroy_tag, vec);CHKERRQ(ierr); PetscFunctionReturn(0); } /*@C DMMoabGetVecTag - Get the MOAB tag associated with this Vec Input Parameter: . vec - Vec being queried Output Parameter: . tag - Tag associated with this Vec. NULL if vec is a native PETSc Vec. Level: beginner .seealso: DMMoabCreateVector(), DMMoabGetVecRange() @*/ PetscErrorCode DMMoabGetVecTag(Vec vec, moab::Tag *tag) { PetscContainer moabdata; Vec_MOAB *vmoab; PetscErrorCode ierr; PetscFunctionBegin; PetscValidPointer(tag, 2); /* Get the MOAB private data */ ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**) &vmoab);CHKERRQ(ierr); *tag = vmoab->tag; PetscFunctionReturn(0); } /*@C DMMoabGetVecRange - Get the MOAB entities associated with this Vec Input Parameter: . vec - Vec being queried Output Parameter: . range - Entities associated with this Vec. NULL if vec is a native PETSc Vec. Level: beginner .seealso: DMMoabCreateVector(), DMMoabGetVecTag() @*/ PetscErrorCode DMMoabGetVecRange(Vec vec, moab::Range *range) { PetscContainer moabdata; Vec_MOAB *vmoab; PetscErrorCode ierr; PetscFunctionBegin; PetscValidPointer(range, 2); /* Get the MOAB private data handle */ ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**) &vmoab);CHKERRQ(ierr); *range = *vmoab->tag_range; PetscFunctionReturn(0); } /*@C DMMoabVecGetArray - Returns the writable direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities Collective Input Parameters: + dm - The DMMoab object being set - vec - The Vector whose underlying data is requested Output Parameter: . array - The local data array Level: intermediate .seealso: DMMoabVecRestoreArray(), DMMoabVecGetArrayRead(), DMMoabVecRestoreArrayRead() @*/ PetscErrorCode DMMoabVecGetArray(DM dm, Vec vec, void* array) { DM_Moab *dmmoab; moab::ErrorCode merr; PetscErrorCode ierr; PetscInt count, i, f; moab::Tag vtag; PetscScalar **varray; PetscScalar *marray; PetscContainer moabdata; Vec_MOAB *vmoab, *xmoab; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); PetscValidPointer(array, 3); dmmoab = (DM_Moab*)dm->data; /* Get the Vec_MOAB struct for the original vector */ ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab);CHKERRQ(ierr); /* Get the real scalar array handle */ varray = reinterpret_cast(array); if (vmoab->is_native_vec) { /* get the local representation of the arrays from Vectors */ ierr = DMGetLocalVector(dm, &vmoab->local);CHKERRQ(ierr); ierr = DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local);CHKERRQ(ierr); ierr = DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local);CHKERRQ(ierr); /* Get the Vec_MOAB struct for the original vector */ ierr = PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**)&xmoab);CHKERRQ(ierr); /* get the local representation of the arrays from Vectors */ ierr = VecGhostGetLocalForm(vmoab->local, &xmoab->local);CHKERRQ(ierr); ierr = VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD);CHKERRQ(ierr); ierr = VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD);CHKERRQ(ierr); ierr = VecGetArray(xmoab->local, varray);CHKERRQ(ierr); } else { /* Get the MOAB private data */ ierr = DMMoabGetVecTag(vec, &vtag);CHKERRQ(ierr); #ifdef MOAB_HAVE_MPI /* exchange the data into ghost cells first */ merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); MBERRNM(merr); #endif ierr = PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray);CHKERRQ(ierr); /* Get the array data for local entities */ merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast(marray), false); MBERRNM(merr); if (count != dmmoab->nloc + dmmoab->nghost) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %D != %D.", count, dmmoab->nloc + dmmoab->nghost); i = 0; for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart]*dmmoab->numFields + f] = marray[i]; //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; } } PetscFunctionReturn(0); } /*@C DMMoabVecRestoreArray - Restores the writable direct access array obtained via DMMoabVecGetArray Collective Input Parameters: + dm - The DMMoab object being set . vec - The Vector whose underlying data is requested - array - The local data array Level: intermediate .seealso: DMMoabVecGetArray(), DMMoabVecGetArrayRead(), DMMoabVecRestoreArrayRead() @*/ PetscErrorCode DMMoabVecRestoreArray(DM dm, Vec vec, void* array) { DM_Moab *dmmoab; moab::ErrorCode merr; PetscErrorCode ierr; moab::Tag vtag; PetscInt count, i, f; PetscScalar **varray; PetscScalar *marray; PetscContainer moabdata; Vec_MOAB *vmoab, *xmoab; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); PetscValidPointer(array, 3); dmmoab = (DM_Moab*)dm->data; /* Get the Vec_MOAB struct for the original vector */ ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab);CHKERRQ(ierr); /* Get the real scalar array handle */ varray = reinterpret_cast(array); if (vmoab->is_native_vec) { /* Get the Vec_MOAB struct for the original vector */ ierr = PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**)&xmoab);CHKERRQ(ierr); /* get the local representation of the arrays from Vectors */ ierr = VecRestoreArray(xmoab->local, varray);CHKERRQ(ierr); ierr = VecGhostUpdateBegin(vmoab->local, ADD_VALUES, SCATTER_REVERSE);CHKERRQ(ierr); ierr = VecGhostUpdateEnd(vmoab->local, ADD_VALUES, SCATTER_REVERSE);CHKERRQ(ierr); ierr = VecGhostRestoreLocalForm(vmoab->local, &xmoab->local);CHKERRQ(ierr); /* restore local pieces */ ierr = DMLocalToGlobalBegin(dm, vmoab->local, INSERT_VALUES, vec);CHKERRQ(ierr); ierr = DMLocalToGlobalEnd(dm, vmoab->local, INSERT_VALUES, vec);CHKERRQ(ierr); ierr = DMRestoreLocalVector(dm, &vmoab->local);CHKERRQ(ierr); } else { /* Get the MOAB private data */ ierr = DMMoabGetVecTag(vec, &vtag);CHKERRQ(ierr); /* Get the array data for local entities */ merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast(marray), false); MBERRNM(merr); if (count != dmmoab->nloc + dmmoab->nghost) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %D != %D.", count, dmmoab->nloc + dmmoab->nghost); i = 0; for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { for (f = 0; f < dmmoab->numFields; f++, i++) marray[i] = (*varray)[dmmoab->lidmap[(PetscInt) * iter - dmmoab->seqstart] * dmmoab->numFields + f]; //marray[i] = (*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]; } #ifdef MOAB_HAVE_MPI /* reduce the tags correctly -> should probably let the user choose how to reduce in the future For all FEM residual based assembly calculations, MPI_SUM should serve well */ merr = dmmoab->pcomm->reduce_tags(vtag, MPI_SUM, *dmmoab->vlocal); MBERRV(dmmoab->mbiface, merr); #endif ierr = PetscFree(*varray);CHKERRQ(ierr); } PetscFunctionReturn(0); } /*@C DMMoabVecGetArrayRead - Returns the read-only direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities Collective Input Parameters: + dm - The DMMoab object being set - vec - The Vector whose underlying data is requested Output Parameter: . array - The local data array Level: intermediate .seealso: DMMoabVecRestoreArrayRead(), DMMoabVecGetArray(), DMMoabVecRestoreArray() @*/ PetscErrorCode DMMoabVecGetArrayRead(DM dm, Vec vec, void* array) { DM_Moab *dmmoab; moab::ErrorCode merr; PetscErrorCode ierr; PetscInt count, i, f; moab::Tag vtag; PetscScalar **varray; PetscScalar *marray; PetscContainer moabdata; Vec_MOAB *vmoab, *xmoab; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); PetscValidPointer(array, 3); dmmoab = (DM_Moab*)dm->data; /* Get the Vec_MOAB struct for the original vector */ ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab);CHKERRQ(ierr); /* Get the real scalar array handle */ varray = reinterpret_cast(array); if (vmoab->is_native_vec) { /* get the local representation of the arrays from Vectors */ ierr = DMGetLocalVector(dm, &vmoab->local);CHKERRQ(ierr); ierr = DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local);CHKERRQ(ierr); ierr = DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local);CHKERRQ(ierr); /* Get the Vec_MOAB struct for the original vector */ ierr = PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**)&xmoab);CHKERRQ(ierr); /* get the local representation of the arrays from Vectors */ ierr = VecGhostGetLocalForm(vmoab->local, &xmoab->local);CHKERRQ(ierr); ierr = VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD);CHKERRQ(ierr); ierr = VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD);CHKERRQ(ierr); ierr = VecGetArray(xmoab->local, varray);CHKERRQ(ierr); } else { /* Get the MOAB private data */ ierr = DMMoabGetVecTag(vec, &vtag);CHKERRQ(ierr); #ifdef MOAB_HAVE_MPI /* exchange the data into ghost cells first */ merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); MBERRNM(merr); #endif ierr = PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray);CHKERRQ(ierr); /* Get the array data for local entities */ merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast(marray), false); MBERRNM(merr); if (count != dmmoab->nloc + dmmoab->nghost) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %D != %D.", count, dmmoab->nloc + dmmoab->nghost); i = 0; for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart]*dmmoab->numFields + f] = marray[i]; //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; } } PetscFunctionReturn(0); } /*@C DMMoabVecRestoreArrayRead - Restores the read-only direct access array obtained via DMMoabVecGetArray Collective Input Parameters: + dm - The DMMoab object being set . vec - The Vector whose underlying data is requested - array - The local data array Level: intermediate .seealso: DMMoabVecGetArrayRead(), DMMoabVecGetArray(), DMMoabVecRestoreArray() @*/ PetscErrorCode DMMoabVecRestoreArrayRead(DM dm, Vec vec, void* array) { PetscErrorCode ierr; PetscScalar **varray; PetscContainer moabdata; Vec_MOAB *vmoab, *xmoab; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); PetscValidPointer(array, 3); /* Get the Vec_MOAB struct for the original vector */ ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab);CHKERRQ(ierr); /* Get the real scalar array handle */ varray = reinterpret_cast(array); if (vmoab->is_native_vec) { /* Get the Vec_MOAB struct for the original vector */ ierr = PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**)&xmoab);CHKERRQ(ierr); /* restore the local representation of the arrays from Vectors */ ierr = VecRestoreArray(xmoab->local, varray);CHKERRQ(ierr); ierr = VecGhostRestoreLocalForm(vmoab->local, &xmoab->local);CHKERRQ(ierr); /* restore local pieces */ ierr = DMRestoreLocalVector(dm, &vmoab->local);CHKERRQ(ierr); } else { /* Nothing to do but just free the memory allocated before */ ierr = PetscFree(*varray);CHKERRQ(ierr); } PetscFunctionReturn(0); } PetscErrorCode DMCreateVector_Moab_Private(DM dm, moab::Tag tag, const moab::Range* userrange, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) { PetscErrorCode ierr; moab::ErrorCode merr; PetscBool is_newtag; const moab::Range *range; PetscInt count, lnative_vec, gnative_vec; std::string ttname; PetscScalar *data_ptr, *defaultvals; Vec_MOAB *vmoab; DM_Moab *dmmoab = (DM_Moab*)dm->data; #ifdef MOAB_HAVE_MPI moab::ParallelComm *pcomm = dmmoab->pcomm; #endif moab::Interface *mbiface = dmmoab->mbiface; PetscFunctionBegin; if (sizeof(PetscReal) != sizeof(PetscScalar)) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "MOAB tags only support Real types (Complex-type unsupported)"); if (!userrange) range = dmmoab->vowned; else range = userrange; if (!range) SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "Input range cannot be empty or call DMSetUp first."); #ifndef USE_NATIVE_PETSCVEC /* If the tag data is in a single sequence, use PETSc native vector since tag_iterate isn't useful anymore */ lnative_vec = (range->psize() - 1); #else lnative_vec = 1; /* NOTE: Testing PETSc vector: will force to create native vector all the time */ // lnative_vec=0; /* NOTE: Testing MOAB vector: will force to create MOAB tag_iterate based vector all the time */ #endif #ifdef MOAB_HAVE_MPI ierr = MPIU_Allreduce(&lnative_vec, &gnative_vec, 1, MPI_INT, MPI_MAX, (((PetscObject)dm)->comm));CHKERRMPI(ierr); #else gnative_vec = lnative_vec; #endif /* Create the MOAB internal data object */ ierr = PetscNew(&vmoab);CHKERRQ(ierr); vmoab->is_native_vec = (gnative_vec > 0 ? PETSC_TRUE : PETSC_FALSE); if (!vmoab->is_native_vec) { merr = moab::MB_SUCCESS; if (tag != 0) merr = mbiface->tag_get_name(tag, ttname); if (!ttname.length() || merr != moab::MB_SUCCESS) { /* get the new name for the anonymous MOABVec -> the tag_name will be destroyed along with Tag */ char *tag_name = NULL; #ifdef MOAB_HAVE_MPI ierr = DMVecCreateTagName_Moab_Private(mbiface,pcomm,&tag_name);CHKERRQ(ierr); #else ierr = DMVecCreateTagName_Moab_Private(mbiface,&tag_name);CHKERRQ(ierr); #endif is_newtag = PETSC_TRUE; /* Create the default value for the tag (all zeros) */ ierr = PetscCalloc1(dmmoab->numFields, &defaultvals);CHKERRQ(ierr); /* Create the tag */ merr = mbiface->tag_get_handle(tag_name, dmmoab->numFields, moab::MB_TYPE_DOUBLE, tag, moab::MB_TAG_DENSE | moab::MB_TAG_CREAT, defaultvals); MBERRNM(merr); ierr = PetscFree(tag_name);CHKERRQ(ierr); ierr = PetscFree(defaultvals);CHKERRQ(ierr); } else { /* Make sure the tag data is of type "double" */ moab::DataType tag_type; merr = mbiface->tag_get_data_type(tag, tag_type); MBERRNM(merr); if (tag_type != moab::MB_TYPE_DOUBLE) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Tag data type must be MB_TYPE_DOUBLE"); is_newtag = destroy_tag; } vmoab->tag = tag; vmoab->new_tag = is_newtag; } vmoab->mbiface = mbiface; #ifdef MOAB_HAVE_MPI vmoab->pcomm = pcomm; #endif vmoab->is_global_vec = is_global_vec; vmoab->tag_size = dmmoab->bs; if (vmoab->is_native_vec) { /* Create the PETSc Vector directly and attach our functions accordingly */ if (!is_global_vec) { /* This is an MPI Vector with ghosted padding */ ierr = VecCreateGhostBlock((((PetscObject)dm)->comm), dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], vec);CHKERRQ(ierr); } else { /* This is an MPI/SEQ Vector */ ierr = VecCreate((((PetscObject)dm)->comm), vec);CHKERRQ(ierr); ierr = VecSetSizes(*vec, dmmoab->numFields * dmmoab->nloc, PETSC_DECIDE);CHKERRQ(ierr); ierr = VecSetBlockSize(*vec, dmmoab->bs);CHKERRQ(ierr); ierr = VecSetType(*vec, VECMPI);CHKERRQ(ierr); } } else { /* Call tag_iterate. This will cause MOAB to allocate memory for the tag data if it hasn't already happened */ merr = mbiface->tag_iterate(tag, range->begin(), range->end(), count, (void*&)data_ptr); MBERRNM(merr); /* set the reference for vector range */ vmoab->tag_range = new moab::Range(*range); merr = mbiface->tag_get_length(tag, dmmoab->numFields); MBERRNM(merr); /* Create the PETSc Vector Query MOAB mesh to check if there are any ghosted entities -> if we do, create a ghosted vector to map correctly to the same layout -> else, create a non-ghosted parallel vector */ if (!is_global_vec) { /* This is an MPI Vector with ghosted padding */ ierr = VecCreateGhostBlockWithArray((((PetscObject)dm)->comm), dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], data_ptr, vec);CHKERRQ(ierr); } else { /* This is an MPI Vector without ghosted padding */ ierr = VecCreateMPIWithArray((((PetscObject)dm)->comm), dmmoab->bs, dmmoab->numFields * range->size(), PETSC_DECIDE, data_ptr, vec);CHKERRQ(ierr); } } ierr = VecSetFromOptions(*vec);CHKERRQ(ierr); /* create a container and store the internal MOAB data for faster access based on Entities etc */ PetscContainer moabdata; ierr = PetscContainerCreate(PETSC_COMM_WORLD, &moabdata);CHKERRQ(ierr); ierr = PetscContainerSetPointer(moabdata, vmoab);CHKERRQ(ierr); ierr = PetscContainerSetUserDestroy(moabdata, DMVecUserDestroy_Moab);CHKERRQ(ierr); ierr = PetscObjectCompose((PetscObject) * vec, "MOABData", (PetscObject)moabdata);CHKERRQ(ierr); (*vec)->ops->duplicate = DMVecDuplicate_Moab; ierr = PetscContainerDestroy(&moabdata);CHKERRQ(ierr); /* Vector created, manually set local to global mapping */ if (dmmoab->ltog_map) { ierr = VecSetLocalToGlobalMapping(*vec, dmmoab->ltog_map);CHKERRQ(ierr); } /* set the DM reference to the vector */ ierr = VecSetDM(*vec, dm);CHKERRQ(ierr); PetscFunctionReturn(0); } /* DMVecCreateTagName_Moab_Private * * Creates a unique tag name that will be shared across processes. If * pcomm is NULL, then this is a serial vector. A unique tag name * will be returned in tag_name in either case. * * The tag names have the format _PETSC_VEC_N where N is some integer. * * NOTE: The tag_name is allocated in this routine; The user needs to free * the character array. */ #ifdef MOAB_HAVE_MPI PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, moab::ParallelComm *pcomm, char** tag_name) #else PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, char** tag_name) #endif { moab::ErrorCode mberr; PetscErrorCode ierr; PetscInt n, global_n; moab::Tag indexTag; PetscFunctionBegin; const char* PVEC_PREFIX = "__PETSC_VEC_"; ierr = PetscMalloc1(PETSC_MAX_PATH_LEN, tag_name);CHKERRQ(ierr); moab::EntityHandle rootset = mbiface->get_root_set(); /* Check to see if there are any PETSc vectors defined */ /* Create a tag in MOAB mesh to index and keep track of number of Petsc vec tags */ mberr = mbiface->tag_get_handle("__PETSC_VECS__", 1, moab::MB_TYPE_INTEGER, indexTag, moab::MB_TAG_SPARSE | moab::MB_TAG_CREAT, 0); MBERRNM(mberr); mberr = mbiface->tag_get_data(indexTag, &rootset, 1, &n); if (mberr == moab::MB_TAG_NOT_FOUND) n = 0; /* this is the first temporary vector */ else MBERRNM(mberr); /* increment the new value of n */ ++n; #ifdef MOAB_HAVE_MPI /* Make sure that n is consistent across all processes */ ierr = MPIU_Allreduce(&n, &global_n, 1, MPI_INT, MPI_MAX, pcomm->comm());CHKERRMPI(ierr); #else global_n = n; #endif /* Set the new name accordingly and return */ ierr = PetscSNPrintf(*tag_name, PETSC_MAX_PATH_LEN - 1, "%s_%D", PVEC_PREFIX, global_n);CHKERRQ(ierr); mberr = mbiface->tag_set_data(indexTag, &rootset, 1, (const void*)&global_n); MBERRNM(mberr); PetscFunctionReturn(0); } PETSC_EXTERN PetscErrorCode DMCreateGlobalVector_Moab(DM dm, Vec *gvec) { PetscErrorCode ierr; DM_Moab *dmmoab = (DM_Moab*)dm->data; PetscFunctionBegin; PetscValidHeaderSpecific(dm,DM_CLASSID,1); PetscValidPointer(gvec,2); ierr = DMCreateVector_Moab_Private(dm,NULL,dmmoab->vowned,PETSC_TRUE,PETSC_TRUE,gvec);CHKERRQ(ierr); PetscFunctionReturn(0); } PETSC_EXTERN PetscErrorCode DMCreateLocalVector_Moab(DM dm, Vec *lvec) { PetscErrorCode ierr; DM_Moab *dmmoab = (DM_Moab*)dm->data; PetscFunctionBegin; PetscValidHeaderSpecific(dm,DM_CLASSID,1); PetscValidPointer(lvec,2); ierr = DMCreateVector_Moab_Private(dm,NULL,dmmoab->vlocal,PETSC_FALSE,PETSC_TRUE,lvec);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode DMVecDuplicate_Moab(Vec x, Vec *y) { PetscErrorCode ierr; DM dm; PetscContainer moabdata; Vec_MOAB *vmoab; PetscFunctionBegin; PetscValidHeaderSpecific(x, VEC_CLASSID, 1); PetscValidPointer(y, 2); /* Get the Vec_MOAB struct for the original vector */ ierr = PetscObjectQuery((PetscObject)x, "MOABData", (PetscObject*) &moabdata);CHKERRQ(ierr); ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab);CHKERRQ(ierr); ierr = VecGetDM(x, &dm);CHKERRQ(ierr); PetscValidHeaderSpecific(dm, DM_CLASSID, 1); ierr = DMCreateVector_Moab_Private(dm,NULL,vmoab->tag_range,vmoab->is_global_vec,PETSC_TRUE,y);CHKERRQ(ierr); ierr = VecSetDM(*y, dm);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode DMVecUserDestroy_Moab(void *user) { Vec_MOAB *vmoab = (Vec_MOAB*)user; PetscErrorCode ierr; moab::ErrorCode merr; PetscFunctionBegin; if (vmoab->new_tag && vmoab->tag) { /* Tag was created via a call to VecDuplicate, delete the underlying tag in MOAB */ merr = vmoab->mbiface->tag_delete(vmoab->tag); MBERRNM(merr); } delete vmoab->tag_range; vmoab->tag = NULL; vmoab->mbiface = NULL; #ifdef MOAB_HAVE_MPI vmoab->pcomm = NULL; #endif ierr = PetscFree(vmoab);CHKERRQ(ierr); PetscFunctionReturn(0); } PETSC_EXTERN PetscErrorCode DMGlobalToLocalBegin_Moab(DM dm, Vec g, InsertMode mode, Vec l) { PetscErrorCode ierr; DM_Moab *dmmoab = (DM_Moab*)dm->data; PetscFunctionBegin; ierr = VecScatterBegin(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE);CHKERRQ(ierr); PetscFunctionReturn(0); } PETSC_EXTERN PetscErrorCode DMGlobalToLocalEnd_Moab(DM dm, Vec g, InsertMode mode, Vec l) { PetscErrorCode ierr; DM_Moab *dmmoab = (DM_Moab*)dm->data; PetscFunctionBegin; ierr = VecScatterEnd(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE);CHKERRQ(ierr); PetscFunctionReturn(0); } PETSC_EXTERN PetscErrorCode DMLocalToGlobalBegin_Moab(DM dm, Vec l, InsertMode mode, Vec g) { PetscErrorCode ierr; DM_Moab *dmmoab = (DM_Moab*)dm->data; PetscFunctionBegin; ierr = VecScatterBegin(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD);CHKERRQ(ierr); PetscFunctionReturn(0); } PETSC_EXTERN PetscErrorCode DMLocalToGlobalEnd_Moab(DM dm, Vec l, InsertMode mode, Vec g) { PetscErrorCode ierr; DM_Moab *dmmoab = (DM_Moab*)dm->data; PetscFunctionBegin; ierr = VecScatterEnd(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD);CHKERRQ(ierr); PetscFunctionReturn(0); }