#include /*I "petscdmplex.h" I*/ #include #undef __FUNCT__ #define __FUNCT__ "DMPlexSetAdjacencyUseCone" /*@ DMPlexSetAdjacencyUseCone - Define adjacency in the mesh using either the cone or the support first Input Parameters: + dm - The DM object - useCone - Flag to use the cone first Level: intermediate Notes: $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE $ FVM: Two points p and q are adjacent if q \in star(cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE .seealso: DMPlexGetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexGetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator() @*/ PetscErrorCode DMPlexSetAdjacencyUseCone(DM dm, PetscBool useCone) { DM_Plex *mesh = (DM_Plex *) dm->data; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); mesh->useCone = useCone; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexGetAdjacencyUseCone" /*@ DMPlexGetAdjacencyUseCone - Query whether adjacency in the mesh uses the cone or the support first Input Parameter: . dm - The DM object Output Parameter: . useCone - Flag to use the cone first Level: intermediate Notes: $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE $ FVM: Two points p and q are adjacent if q \in star(cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexGetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator() @*/ PetscErrorCode DMPlexGetAdjacencyUseCone(DM dm, PetscBool *useCone) { DM_Plex *mesh = (DM_Plex *) dm->data; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidIntPointer(useCone, 2); *useCone = mesh->useCone; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexSetAdjacencyUseClosure" /*@ DMPlexSetAdjacencyUseClosure - Define adjacency in the mesh using the transitive closure Input Parameters: + dm - The DM object - useClosure - Flag to use the closure Level: intermediate Notes: $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE $ FVM: Two points p and q are adjacent if q \in star(cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE .seealso: DMPlexGetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator() @*/ PetscErrorCode DMPlexSetAdjacencyUseClosure(DM dm, PetscBool useClosure) { DM_Plex *mesh = (DM_Plex *) dm->data; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); mesh->useClosure = useClosure; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexGetAdjacencyUseClosure" /*@ DMPlexGetAdjacencyUseClosure - Query whether adjacency in the mesh uses the transitive closure Input Parameter: . dm - The DM object Output Parameter: . useClosure - Flag to use the closure Level: intermediate Notes: $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE $ FVM: Two points p and q are adjacent if q \in star(cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE .seealso: DMPlexSetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator() @*/ PetscErrorCode DMPlexGetAdjacencyUseClosure(DM dm, PetscBool *useClosure) { DM_Plex *mesh = (DM_Plex *) dm->data; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidIntPointer(useClosure, 2); *useClosure = mesh->useClosure; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexGetAdjacency_Cone_Internal" static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) { const PetscInt *cone = NULL; PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; PetscErrorCode ierr; PetscFunctionBeginHot; ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); for (c = 0; c < coneSize; ++c) { const PetscInt *support = NULL; PetscInt supportSize, s, q; ierr = DMPlexGetSupportSize(dm, cone[c], &supportSize);CHKERRQ(ierr); ierr = DMPlexGetSupport(dm, cone[c], &support);CHKERRQ(ierr); for (s = 0; s < supportSize; ++s) { for (q = 0; q < numAdj || (adj[numAdj++] = support[s],0); ++q) { if (support[s] == adj[q]) break; } if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); } } *adjSize = numAdj; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexGetAdjacency_Support_Internal" static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) { const PetscInt *support = NULL; PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; PetscErrorCode ierr; PetscFunctionBeginHot; ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); for (s = 0; s < supportSize; ++s) { const PetscInt *cone = NULL; PetscInt coneSize, c, q; ierr = DMPlexGetConeSize(dm, support[s], &coneSize);CHKERRQ(ierr); ierr = DMPlexGetCone(dm, support[s], &cone);CHKERRQ(ierr); for (c = 0; c < coneSize; ++c) { for (q = 0; q < numAdj || (adj[numAdj++] = cone[c],0); ++q) { if (cone[c] == adj[q]) break; } if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); } } *adjSize = numAdj; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexGetAdjacency_Transitive_Internal" static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) { PetscInt *star = NULL; PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; PetscErrorCode ierr; PetscFunctionBeginHot; ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); for (s = 0; s < starSize*2; s += 2) { const PetscInt *closure = NULL; PetscInt closureSize, c, q; ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); for (c = 0; c < closureSize*2; c += 2) { for (q = 0; q < numAdj || (adj[numAdj++] = closure[c],0); ++q) { if (closure[c] == adj[q]) break; } if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); } ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); } ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); *adjSize = numAdj; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexGetAdjacency_Internal" PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscInt *adjSize, PetscInt *adj[]) { static PetscInt asiz = 0; PetscErrorCode ierr; PetscFunctionBeginHot; if (!*adj) { PetscInt depth, maxConeSize, maxSupportSize; ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); asiz = PetscPowInt(maxConeSize, depth+1) * PetscPowInt(maxSupportSize, depth+1) + 1; ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); } if (*adjSize < 0) *adjSize = asiz; if (useTransitiveClosure) { ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); } else if (useCone) { ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); } else { ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); } PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexGetAdjacency" /*@ DMPlexGetAdjacency - Return all points adjacent to the given point Input Parameters: + dm - The DM object . p - The point . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE - adj - Either NULL so that the array is allocated, or an existing array with size adjSize Output Parameters: + adjSize - The number of adjacent points - adj - The adjacent points Level: advanced Notes: The user must PetscFree the adj array if it was not passed in. .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() @*/ PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) { DM_Plex *mesh = (DM_Plex *) dm->data; PetscErrorCode ierr; PetscFunctionBeginHot; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); PetscValidPointer(adjSize,3); PetscValidPointer(adj,4); ierr = DMPlexGetAdjacency_Internal(dm, p, mesh->useCone, mesh->useClosure, adjSize, adj);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexDistributeField" /*@ DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution Collective on DM Input Parameters: + dm - The DMPlex object . pointSF - The PetscSF describing the communication pattern . originalSection - The PetscSection for existing data layout - originalVec - The existing data Output Parameters: + newSection - The PetscSF describing the new data layout - newVec - The new data Level: developer .seealso: DMPlexDistribute(), DMPlexDistributeData() @*/ PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) { PetscSF fieldSF; PetscInt *remoteOffsets, fieldSize; PetscScalar *originalValues, *newValues; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexDistributeData" /*@ DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution Collective on DM Input Parameters: + dm - The DMPlex object . pointSF - The PetscSF describing the communication pattern . originalSection - The PetscSection for existing data layout . datatype - The type of data - originalData - The existing data Output Parameters: + newSection - The PetscSF describing the new data layout - newData - The new data Level: developer .seealso: DMPlexDistribute(), DMPlexDistributeField() @*/ PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) { PetscSF fieldSF; PetscInt *remoteOffsets, fieldSize; PetscMPIInt dataSize; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr); ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "DMPlexDistribute" /*@C DMPlexDistribute - Distributes the mesh and any associated sections. Not Collective Input Parameter: + dm - The original DMPlex object . partitioner - The partitioning package, or NULL for the default - overlap - The overlap of partitions, 0 is the default Output Parameter: + sf - The PetscSF used for point distribution - parallelMesh - The distributed DMPlex object, or NULL Note: If the mesh was not distributed, the return value is NULL. The user can control the definition of adjacency for the mesh using DMPlexGetAdjacencyUseCone() and DMPlexSetAdjacencyUseClosure(). They should choose the combination appropriate for the function representation on the mesh. Level: intermediate .keywords: mesh, elements .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure() @*/ PetscErrorCode DMPlexDistribute(DM dm, const char partitioner[], PetscInt overlap, PetscSF *sf, DM *dmParallel) { DM_Plex *mesh = (DM_Plex*) dm->data, *pmesh; MPI_Comm comm; const PetscInt height = 0; PetscInt dim, numRemoteRanks; IS origCellPart, origPart, cellPart, part; PetscSection origCellPartSection, origPartSection, cellPartSection, partSection; PetscSFNode *remoteRanks; PetscSF partSF, pointSF, coneSF; ISLocalToGlobalMapping renumbering; PetscSection originalConeSection, newConeSection; PetscInt *remoteOffsets; PetscInt *cones, *newCones, newConesSize; PetscBool flg; PetscMPIInt rank, numProcs, p; PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(dm, DM_CLASSID, 1); if (sf) PetscValidPointer(sf,4); PetscValidPointer(dmParallel,5); ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); ierr = MPI_Comm_size(comm, &numProcs);CHKERRQ(ierr); *dmParallel = NULL; if (numProcs == 1) PetscFunctionReturn(0); ierr = DMPlexGetDimension(dm, &dim);CHKERRQ(ierr); /* Create cell partition - We need to rewrite to use IS, use the MatPartition stuff */ ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); if (overlap > 1) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Overlap > 1 not yet implemented"); ierr = DMPlexCreatePartition(dm, partitioner, height, overlap > 0 ? PETSC_TRUE : PETSC_FALSE, &cellPartSection, &cellPart, &origCellPartSection, &origCellPart);CHKERRQ(ierr); /* Create SF assuming a serial partition for all processes: Could check for IS length here */ if (!rank) numRemoteRanks = numProcs; else numRemoteRanks = 0; ierr = PetscMalloc1(numRemoteRanks, &remoteRanks);CHKERRQ(ierr); for (p = 0; p < numRemoteRanks; ++p) { remoteRanks[p].rank = p; remoteRanks[p].index = 0; } ierr = PetscSFCreate(comm, &partSF);CHKERRQ(ierr); ierr = PetscSFSetGraph(partSF, 1, numRemoteRanks, NULL, PETSC_OWN_POINTER, remoteRanks, PETSC_OWN_POINTER);CHKERRQ(ierr); ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); if (flg) { ierr = PetscPrintf(comm, "Cell Partition:\n");CHKERRQ(ierr); ierr = PetscSectionView(cellPartSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); ierr = ISView(cellPart, NULL);CHKERRQ(ierr); if (origCellPart) { ierr = PetscPrintf(comm, "Original Cell Partition:\n");CHKERRQ(ierr); ierr = PetscSectionView(origCellPartSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); ierr = ISView(origCellPart, NULL);CHKERRQ(ierr); } ierr = PetscSFView(partSF, NULL);CHKERRQ(ierr); } /* Close the partition over the mesh */ ierr = DMPlexCreatePartitionClosure(dm, cellPartSection, cellPart, &partSection, &part);CHKERRQ(ierr); ierr = ISDestroy(&cellPart);CHKERRQ(ierr); ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); /* Create new mesh */ ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); ierr = DMPlexSetDimension(*dmParallel, dim);CHKERRQ(ierr); ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); pmesh = (DM_Plex*) (*dmParallel)->data; /* Distribute sieve points and the global point numbering (replaces creating remote bases) */ ierr = PetscSFConvertPartition(partSF, partSection, part, &renumbering, &pointSF);CHKERRQ(ierr); if (flg) { ierr = PetscPrintf(comm, "Point Partition:\n");CHKERRQ(ierr); ierr = PetscSectionView(partSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); ierr = ISView(part, NULL);CHKERRQ(ierr); ierr = PetscSFView(pointSF, NULL);CHKERRQ(ierr); ierr = PetscPrintf(comm, "Point Renumbering after partition:\n");CHKERRQ(ierr); ierr = ISLocalToGlobalMappingView(renumbering, NULL);CHKERRQ(ierr); } ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); /* Distribute cone section */ ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); ierr = DMPlexGetConeSection(*dmParallel, &newConeSection);CHKERRQ(ierr); ierr = PetscSFDistributeSection(pointSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); ierr = DMSetUp(*dmParallel);CHKERRQ(ierr); { PetscInt pStart, pEnd, p; ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); for (p = pStart; p < pEnd; ++p) { PetscInt coneSize; ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); } } /* Communicate and renumber cones */ ierr = PetscSFCreateSectionSF(pointSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); ierr = DMPlexGetCones(*dmParallel, &newCones);CHKERRQ(ierr); ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); if (flg) { ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); } ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); ierr = DMPlexGetConeOrientations(*dmParallel, &newCones);CHKERRQ(ierr); ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); /* Create supports and stratify sieve */ { PetscInt pStart, pEnd; ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); } ierr = DMPlexSymmetrize(*dmParallel);CHKERRQ(ierr); ierr = DMPlexStratify(*dmParallel);CHKERRQ(ierr); /* Distribute Coordinates */ { PetscSection originalCoordSection, newCoordSection; Vec originalCoordinates, newCoordinates; PetscInt bs; const char *name; ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); ierr = DMGetCoordinateSection(*dmParallel, &newCoordSection);CHKERRQ(ierr); ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); ierr = VecCreate(comm, &newCoordinates);CHKERRQ(ierr); ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); ierr = DMPlexDistributeField(dm, pointSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); ierr = DMSetCoordinatesLocal(*dmParallel, newCoordinates);CHKERRQ(ierr); ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); } /* Distribute labels */ ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); { DMLabel next = mesh->labels, newNext = pmesh->labels; PetscInt numLabels = 0, l; /* Bcast number of labels */ while (next) {++numLabels; next = next->next;} ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr); next = mesh->labels; for (l = 0; l < numLabels; ++l) { DMLabel labelNew; PetscBool isdepth; /* Skip "depth" because it is recreated */ if (!rank) {ierr = PetscStrcmp(next->name, "depth", &isdepth);CHKERRQ(ierr);} ierr = MPI_Bcast(&isdepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr); if (isdepth) {if (!rank) next = next->next; continue;} ierr = DMLabelDistribute(next, partSection, part, renumbering, &labelNew);CHKERRQ(ierr); /* Insert into list */ if (newNext) newNext->next = labelNew; else pmesh->labels = labelNew; newNext = labelNew; if (!rank) next = next->next; } } ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); /* Setup hybrid structure */ { const PetscInt *gpoints; PetscInt depth, n, d; for (d = 0; d <= dim; ++d) {pmesh->hybridPointMax[d] = mesh->hybridPointMax[d];} ierr = MPI_Bcast(pmesh->hybridPointMax, dim+1, MPIU_INT, 0, comm);CHKERRQ(ierr); ierr = ISLocalToGlobalMappingGetSize(renumbering, &n);CHKERRQ(ierr); ierr = ISLocalToGlobalMappingGetIndices(renumbering, &gpoints);CHKERRQ(ierr); ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); for (d = 0; d <= dim; ++d) { PetscInt pmax = pmesh->hybridPointMax[d], newmax = 0, pEnd, stratum[2], p; if (pmax < 0) continue; ierr = DMPlexGetDepthStratum(dm, d > depth ? depth : d, &stratum[0], &stratum[1]);CHKERRQ(ierr); ierr = DMPlexGetDepthStratum(*dmParallel, d, NULL, &pEnd);CHKERRQ(ierr); ierr = MPI_Bcast(stratum, 2, MPIU_INT, 0, comm);CHKERRQ(ierr); for (p = 0; p < n; ++p) { const PetscInt point = gpoints[p]; if ((point >= stratum[0]) && (point < stratum[1]) && (point >= pmax)) ++newmax; } if (newmax > 0) pmesh->hybridPointMax[d] = pEnd - newmax; else pmesh->hybridPointMax[d] = -1; } ierr = ISLocalToGlobalMappingRestoreIndices(renumbering, &gpoints);CHKERRQ(ierr); } /* Cleanup Partition */ ierr = ISLocalToGlobalMappingDestroy(&renumbering);CHKERRQ(ierr); ierr = PetscSFDestroy(&partSF);CHKERRQ(ierr); ierr = PetscSectionDestroy(&partSection);CHKERRQ(ierr); ierr = ISDestroy(&part);CHKERRQ(ierr); /* Create point SF for parallel mesh */ ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); { const PetscInt *leaves; PetscSFNode *remotePoints, *rowners, *lowners; PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; PetscInt pStart, pEnd; ierr = DMPlexGetChart(*dmParallel, &pStart, &pEnd);CHKERRQ(ierr); ierr = PetscSFGetGraph(pointSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); for (p=0; p= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ lowners[p].rank = -2; lowners[p].index = -2; } } for (p=0; psf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); ierr = PetscSFSetFromOptions((*dmParallel)->sf);CHKERRQ(ierr); } pmesh->useCone = mesh->useCone; pmesh->useClosure = mesh->useClosure; ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); /* Copy BC */ ierr = DMPlexCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); /* Cleanup */ if (sf) {*sf = pointSF;} else {ierr = PetscSFDestroy(&pointSF);CHKERRQ(ierr);} ierr = DMSetFromOptions(*dmParallel);CHKERRQ(ierr); ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); PetscFunctionReturn(0); }