static char help[] = "Tests interpolation and output of hybrid meshes\n\n"; #include #include /* Much can be learned using -rd_dm_view -rd2_dm_view -rd_section_view -rd_vec_view -rd2_section_view */ static PetscErrorCode redistribute_vec(DM dist_dm, PetscSF sf, Vec *v) { DM dm, dist_v_dm; PetscSection section, dist_section; Vec dist_v; PetscMPIInt rank, size, p; PetscErrorCode ierr; PetscFunctionBegin; ierr = VecGetDM(*v, &dm);CHKERRQ(ierr); ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); ierr = DMViewFromOptions(dm, NULL, "-rd_dm_view");CHKERRQ(ierr); ierr = DMViewFromOptions(dist_dm, NULL, "-rd2_dm_view");CHKERRQ(ierr); ierr = DMClone(dm, &dist_v_dm);CHKERRQ(ierr); ierr = VecCreate(PetscObjectComm((PetscObject) *v), &dist_v);CHKERRQ(ierr); ierr = VecSetDM(dist_v, dist_v_dm);CHKERRQ(ierr); ierr = PetscSectionCreate(PetscObjectComm((PetscObject) *v), &dist_section);CHKERRQ(ierr); ierr = DMSetLocalSection(dist_v_dm, dist_section);CHKERRQ(ierr); ierr = PetscObjectViewFromOptions((PetscObject) section, NULL, "-rd_section_view");CHKERRQ(ierr); ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr); ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr); for (p = 0; p < size; ++p) { if (p == rank) { ierr = PetscObjectViewFromOptions((PetscObject) *v, NULL, "-rd_vec_view");CHKERRQ(ierr);} ierr = PetscBarrier((PetscObject) dm);CHKERRQ(ierr); ierr = PetscViewerFlush(PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); } ierr = DMPlexDistributeField(dm, sf, section, *v, dist_section, dist_v);CHKERRQ(ierr); for (p = 0; p < size; ++p) { if (p == rank) { ierr = PetscObjectViewFromOptions((PetscObject) dist_section, NULL, "-rd2_section_view");CHKERRQ(ierr); ierr = PetscObjectViewFromOptions((PetscObject) dist_v, NULL, "-rd2_vec_view");CHKERRQ(ierr); } ierr = PetscBarrier((PetscObject) dm);CHKERRQ(ierr); ierr = PetscViewerFlush(PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); } ierr = PetscSectionDestroy(&dist_section);CHKERRQ(ierr); ierr = DMDestroy(&dist_v_dm);CHKERRQ(ierr); ierr = VecDestroy(v);CHKERRQ(ierr); *v = dist_v; PetscFunctionReturn(0); } static PetscErrorCode dm_view_geometry(DM dm, Vec cell_geom, Vec face_geom) { DM cell_dm, face_dm; PetscSection cell_section, face_section; const PetscScalar *cell_array, *face_array; const PetscInt *cells; PetscInt c, start_cell, end_cell; PetscInt f, start_face, end_face; PetscInt supportSize, offset; PetscMPIInt rank; PetscErrorCode ierr; PetscFunctionBegin; ierr = MPI_Comm_rank(PETSC_COMM_WORLD, &rank);CHKERRMPI(ierr); /* cells */ ierr = DMPlexGetHeightStratum(dm, 0, &start_cell, &end_cell);CHKERRQ(ierr); ierr = VecGetDM(cell_geom, &cell_dm);CHKERRQ(ierr); ierr = DMGetLocalSection(cell_dm, &cell_section);CHKERRQ(ierr); ierr = VecGetArrayRead(cell_geom, &cell_array);CHKERRQ(ierr); for (c = start_cell; c < end_cell; ++c) { const PetscFVCellGeom *geom; ierr = PetscSectionGetOffset(cell_section, c, &offset);CHKERRQ(ierr); geom = (PetscFVCellGeom*)&cell_array[offset]; ierr = PetscSynchronizedPrintf(PETSC_COMM_WORLD, "rank %d c %D centroid %g,%g,%g vol %g\n", rank, c, (double)geom->centroid[0], (double)geom->centroid[1], (double)geom->centroid[2], (double)geom->volume);CHKERRQ(ierr); } ierr = PetscSynchronizedFlush(PETSC_COMM_WORLD, NULL);CHKERRQ(ierr); ierr = VecRestoreArrayRead(cell_geom, &cell_array);CHKERRQ(ierr); /* faces */ ierr = DMPlexGetHeightStratum(dm, 1, &start_face, &end_face);CHKERRQ(ierr); ierr = VecGetDM(face_geom, &face_dm);CHKERRQ(ierr); ierr = DMGetLocalSection(face_dm, &face_section);CHKERRQ(ierr); ierr = VecGetArrayRead(face_geom, &face_array);CHKERRQ(ierr); for (f = start_face; f < end_face; ++f) { ierr = DMPlexGetSupport(dm, f, &cells);CHKERRQ(ierr); ierr = DMPlexGetSupportSize(dm, f, &supportSize);CHKERRQ(ierr); if (supportSize > 1) { ierr = PetscSectionGetOffset(face_section, f, &offset);CHKERRQ(ierr); ierr = PetscSynchronizedPrintf(PETSC_COMM_WORLD, "rank %d f %D cells %D,%D normal %g,%g,%g centroid %g,%g,%g\n", rank, f, cells[0], cells[1], (double) PetscRealPart(face_array[offset+0]), (double) PetscRealPart(face_array[offset+1]), (double) PetscRealPart(face_array[offset+2]), (double) PetscRealPart(face_array[offset+3]), (double) PetscRealPart(face_array[offset+4]), (double) PetscRealPart(face_array[offset+5]));CHKERRQ(ierr); } } ierr = PetscSynchronizedFlush(PETSC_COMM_WORLD, NULL);CHKERRQ(ierr); ierr = VecRestoreArrayRead(cell_geom, &cell_array);CHKERRQ(ierr); PetscFunctionReturn(0); } int main(int argc, char **argv) { DM dm, redist_dm; PetscPartitioner part; PetscSF redist_sf; Vec cell_geom, face_geom; PetscInt overlap2 = 1; PetscErrorCode ierr; ierr = PetscInitialize(&argc, &argv, NULL, help); if (ierr) return ierr; ierr = DMCreate(PETSC_COMM_WORLD, &dm);CHKERRQ(ierr); ierr = DMSetType(dm, DMPLEX);CHKERRQ(ierr); ierr = DMSetFromOptions(dm);CHKERRQ(ierr); ierr = DMViewFromOptions(dm, NULL, "-dm_view");CHKERRQ(ierr); ierr = DMPlexComputeGeometryFVM(dm, &cell_geom, &face_geom);CHKERRQ(ierr); ierr = dm_view_geometry(dm, cell_geom, face_geom);CHKERRQ(ierr); /* redistribute */ ierr = DMPlexGetPartitioner(dm, &part);CHKERRQ(ierr); ierr = PetscPartitionerSetFromOptions(part);CHKERRQ(ierr); ierr = PetscOptionsGetInt(NULL, NULL, "-overlap2", &overlap2, NULL);CHKERRQ(ierr); ierr = DMPlexDistribute(dm, overlap2, &redist_sf, &redist_dm);CHKERRQ(ierr); if (redist_dm) { ierr = redistribute_vec(redist_dm, redist_sf, &cell_geom);CHKERRQ(ierr); ierr = redistribute_vec(redist_dm, redist_sf, &face_geom);CHKERRQ(ierr); ierr = PetscObjectViewFromOptions((PetscObject) redist_sf, NULL, "-rd2_sf_view");CHKERRQ(ierr); ierr = PetscPrintf(PETSC_COMM_WORLD, "redistributed:\n");CHKERRQ(ierr); ierr = dm_view_geometry(redist_dm, cell_geom, face_geom);CHKERRQ(ierr); } ierr = VecDestroy(&cell_geom);CHKERRQ(ierr); ierr = VecDestroy(&face_geom);CHKERRQ(ierr); ierr = PetscSFDestroy(&redist_sf);CHKERRQ(ierr); ierr = DMDestroy(&redist_dm);CHKERRQ(ierr); ierr = DMDestroy(&dm);CHKERRQ(ierr); ierr = PetscFinalize(); return ierr; } /*TEST test: suffix: 0 nsize: 3 args: -dm_plex_dim 3 -dm_plex_box_faces 8,1,1 -dm_plex_simplex 0 -dm_plex_adj_cone 1 -dm_plex_adj_closure 0 -dm_distribute -petscpartitioner_type simple -dm_distribute_overlap 1 -overlap2 1 TEST*/