const char help[] = "A test of H-div conforming discretizations on different cell types.\n"; #include #include #include #include #include #include /* We are using the system \vec{u} = \vec{\hat{u}} p = \div{\vec{u}} in low degree approximation space d = \div{\vec{u}} - p == 0 in higher degree approximation space That is, we are using the field d to compute the error between \div{\vec{u}} computed in a space 1 degree higher than p and the value of p which is \div{u} computed in the low degree space. If H-div elements are implemented correctly then this should be identically zero since the divergence of a function in H(div) should be exactly representable in L_2 by definition. */ static PetscErrorCode zero_func(PetscInt dim,PetscReal time,const PetscReal x[],PetscInt Nc,PetscScalar *u,void *ctx) { PetscInt c; for (c = 0; c < Nc; ++c) u[c] = 0; return 0; } /* Linear Exact Functions \vec{u} = \vec{x}; p = dim; */ static PetscErrorCode linear_u(PetscInt dim,PetscReal time,const PetscReal x[],PetscInt Nc,PetscScalar *u,void *ctx) { PetscInt c; for (c = 0; c < Nc; ++c) u[c] = x[c]; return 0; } static PetscErrorCode linear_p(PetscInt dim,PetscReal time,const PetscReal x[],PetscInt Nc,PetscScalar *u,void *ctx) { u[0] = dim; return 0; } /* Sinusoidal Exact Functions * u_i = \sin{2*\pi*x_i} * p = \Sum_{i=1}^{dim} 2*\pi*cos{2*\pi*x_i} * */ static PetscErrorCode sinusoid_u(PetscInt dim,PetscReal time,const PetscReal x[],PetscInt Nc,PetscScalar *u,void *ctx) { PetscInt c; for (c = 0; c< Nc; ++c) u[c] = PetscSinReal(2*PETSC_PI*x[c]); return 0; } static PetscErrorCode sinusoid_p(PetscInt dim,PetscReal time,const PetscReal x[],PetscInt Nc,PetscScalar *u,void *ctx) { PetscInt d; u[0]=0; for (d=0; d */ static void g0_vu(PetscInt dim,PetscInt Nf,PetscInt NfAux,const PetscInt uOff[],const PetscInt uOff_x[],const PetscScalar u[],const PetscScalar u_t[],const PetscScalar u_x[],const PetscInt aOff[],const PetscInt aOff_x[],const PetscScalar a[],const PetscScalar a_t[],const PetscScalar a_x[],PetscReal t,PetscReal u_tShift,const PetscReal x[],PetscInt numConstants,const PetscScalar constants[],PetscScalar g0[]) { PetscInt c; for (c = 0; c < dim; ++c) g0[c * dim + c] = 1.0; } /* */ static void g0_qp(PetscInt dim,PetscInt Nf,PetscInt NfAux,const PetscInt uOff[],const PetscInt uOff_x[],const PetscScalar u[],const PetscScalar u_t[],const PetscScalar u_x[],const PetscInt aOff[],const PetscInt aOff_x[],const PetscScalar a[],const PetscScalar a_t[],const PetscScalar a_x[],PetscReal t,PetscReal u_tShift,const PetscReal x[],PetscInt numConstants,const PetscScalar constants[],PetscScalar g0[]) { PetscInt d; for (d=0; d< dim; ++d) g0[d * dim + d] = 1.0; } /* - For the embedded system. This is different from the method of * manufactured solution because instead of computing - we * need - This is only used by the embedded system. Where we need to compute * - + */ static void g0_wp(PetscInt dim,PetscInt Nf,PetscInt NfAux,const PetscInt uOff[],const PetscInt uOff_x[],const PetscScalar u[],const PetscScalar u_t[],const PetscScalar u_x[],const PetscInt aOff[],const PetscInt aOff_x[],const PetscScalar a[],const PetscScalar a_t[],const PetscScalar a_x[],PetscReal t,PetscReal u_tShift,const PetscReal x[],PetscInt numConstants,const PetscScalar constants[],PetscScalar g0[]) { PetscInt d; for (d=0; d< dim; ++d) g0[d * dim + d] = -1.0; } /* */ static void g0_wd(PetscInt dim,PetscInt Nf,PetscInt NfAux,const PetscInt uOff[],const PetscInt uOff_x[],const PetscScalar u[],const PetscScalar u_t[],const PetscScalar u_x[],const PetscInt aOff[],const PetscInt aOff_x[],const PetscScalar a[],const PetscScalar a_t[],const PetscScalar a_x[],PetscReal t,PetscReal u_tShift,const PetscReal x[],PetscInt numConstants,const PetscScalar constants[],PetscScalar g0[]) { PetscInt c; for (c = 0; c < dim; ++c) g0[c*dim+c] = 1.0; } /* for the embedded system. */ static void g1_wu(PetscInt dim,PetscInt Nf,PetscInt NfAux,const PetscInt uOff[],const PetscInt uOff_x[],const PetscScalar u[],const PetscScalar u_t[],const PetscScalar u_x[],const PetscInt aOff[],const PetscInt aOff_x[],const PetscScalar a[],const PetscScalar a_t[],const PetscScalar a_x[],PetscReal t,PetscReal u_tShift,const PetscReal x[],PetscInt numConstants,const PetscScalar constants[],PetscScalar g1[]) { PetscInt d; for (d = 0; d < dim; ++d) g1[d * dim + d] = 1.0; } /* Enum and string array for selecting mesh perturbation options */ typedef enum { NONE = 0,PERTURB = 1,SKEW = 2,SKEW_PERTURB = 3 } Transform; const char* const TransformTypes[] = {"none","perturb","skew","skew_perturb","Perturbation","",NULL}; /* Enum and string array for selecting the form of the exact solution*/ typedef enum { LINEAR = 0,SINUSOIDAL = 1 } Solution; const char* const SolutionTypes[] = {"linear","sinusoidal","Solution","",NULL}; typedef struct { Transform mesh_transform; Solution sol_form; } UserCtx; /* Process command line options and initialize the UserCtx struct */ static PetscErrorCode ProcessOptions(MPI_Comm comm,UserCtx * user) { PetscErrorCode ierr; PetscFunctionBegin; /* Default to 2D, unperturbed triangle mesh and Linear solution.*/ user->mesh_transform = NONE; user->sol_form = LINEAR; ierr = PetscOptionsBegin(comm,"","H-div Test Options","DMPLEX");PetscCall(ierr); PetscCall(PetscOptionsEnum("-mesh_transform","Method used to perturb the mesh vertices. Options are skew, perturb, skew_perturb,or none","ex39.c",TransformTypes,(PetscEnum) user->mesh_transform,(PetscEnum*) &user->mesh_transform,NULL)); PetscCall(PetscOptionsEnum("-sol_form","Form of the exact solution. Options are Linear or Sinusoidal","ex39.c",SolutionTypes,(PetscEnum) user->sol_form,(PetscEnum*) &user->sol_form,NULL)); ierr = PetscOptionsEnd();PetscCall(ierr); PetscFunctionReturn(0); } /* Perturb the position of each mesh vertex by a small amount.*/ static PetscErrorCode PerturbMesh(DM *mesh,PetscScalar *coordVals,PetscInt npoints,PetscInt dim) { PetscInt i,j,k; PetscReal minCoords[3],maxCoords[3],maxPert[3],randVal,amp; PetscRandom ran; PetscFunctionBegin; PetscCall(DMGetCoordinateDim(*mesh,&dim)); PetscCall(DMGetLocalBoundingBox(*mesh,minCoords,maxCoords)); PetscCall(PetscRandomCreate(PETSC_COMM_WORLD,&ran)); /* Compute something approximately equal to half an edge length. This is the * most we can perturb points and guarantee that there won't be any topology * issues. */ for (k = 0; k < dim; ++k) maxPert[k] = 0.025 * (maxCoords[k] - minCoords[k]) / (PetscPowReal(npoints,1. / dim) - 1); /* For each mesh vertex */ for (i = 0; i < npoints; ++i) { /* For each coordinate of the vertex */ for (j = 0; j < dim; ++j) { /* Generate a random amplitude in [-0.5*maxPert, 0.5*maxPert] */ PetscCall(PetscRandomGetValueReal(ran,&randVal)); amp = maxPert[j] * (randVal - 0.5); /* Add the perturbation to the vertex*/ coordVals[dim * i + j] += amp; } } PetscRandomDestroy(&ran); PetscFunctionReturn(0); } /* Apply a global skew transformation to the mesh. */ static PetscErrorCode SkewMesh(DM * mesh,PetscScalar * coordVals,PetscInt npoints,PetscInt dim) { PetscInt i,j,k,l; PetscScalar * transMat; PetscScalar tmpcoord[3]; PetscRandom ran; PetscReal randVal; PetscFunctionBegin; PetscCall(PetscCalloc1(dim * dim,&transMat)); PetscCall(PetscRandomCreate(PETSC_COMM_WORLD,&ran)); /* Make a matrix representing a skew transformation */ for (i = 0; i < dim; ++i) { for (j = 0; j < dim; ++j) { PetscCall(PetscRandomGetValueReal(ran,&randVal)); if (i == j) transMat[i * dim + j] = 1.; else if (j < i) transMat[i * dim + j] = 2 * (j + i)*randVal; else transMat[i * dim + j] = 0; } } /* Multiply each coordinate vector by our tranformation.*/ for (i = 0; i < npoints; ++i) { for (j = 0; j < dim; ++j) { tmpcoord[j] = 0; for (k = 0; k < dim; ++k) tmpcoord[j] += coordVals[dim * i + k] * transMat[dim * k + j]; } for (l = 0; l < dim; ++l) coordVals[dim * i + l] = tmpcoord[l]; } PetscCall(PetscFree(transMat)); PetscCall(PetscRandomDestroy(&ran)); PetscFunctionReturn(0); } /* Accesses the mesh coordinate array and performs the transformation operations * specified by the user options */ static PetscErrorCode TransformMesh(UserCtx * user,DM * mesh) { PetscInt dim,npoints; PetscScalar * coordVals; Vec coords; PetscFunctionBegin; PetscCall(DMGetCoordinates(*mesh,&coords)); PetscCall(VecGetArray(coords,&coordVals)); PetscCall(VecGetLocalSize(coords,&npoints)); PetscCall(DMGetCoordinateDim(*mesh,&dim)); npoints = npoints / dim; switch (user->mesh_transform) { case PERTURB: PetscCall(PerturbMesh(mesh,coordVals,npoints,dim)); break; case SKEW: PetscCall(SkewMesh(mesh,coordVals,npoints,dim)); break; case SKEW_PERTURB: PetscCall(SkewMesh(mesh,coordVals,npoints,dim)); PetscCall(PerturbMesh(mesh,coordVals,npoints,dim)); break; default: PetscFunctionReturn(-1); } PetscCall(VecRestoreArray(coords,&coordVals)); PetscCall(DMSetCoordinates(*mesh,coords)); PetscFunctionReturn(0); } static PetscErrorCode CreateMesh(MPI_Comm comm,UserCtx * user,DM * mesh) { PetscFunctionBegin; PetscCall(DMCreate(comm, mesh)); PetscCall(DMSetType(*mesh, DMPLEX)); PetscCall(DMSetFromOptions(*mesh)); /* Perform any mesh transformations if specified by user */ if (user->mesh_transform != NONE) { PetscCall(TransformMesh(user,mesh)); } /* Get any other mesh options from the command line */ PetscCall(DMSetApplicationContext(*mesh,user)); PetscCall(DMViewFromOptions(*mesh,NULL,"-dm_view")); PetscFunctionReturn(0); } /* Setup the system of equations that we wish to solve */ static PetscErrorCode SetupProblem(DM dm,UserCtx * user) { PetscDS prob; DMLabel label; const PetscInt id=1; PetscFunctionBegin; PetscCall(DMGetDS(dm,&prob)); /* All of these are independent of the user's choice of solution */ PetscCall(PetscDSSetResidual(prob,1,f0_q,NULL)); PetscCall(PetscDSSetResidual(prob,2,f0_w,NULL)); PetscCall(PetscDSSetJacobian(prob,0,0,g0_vu,NULL,NULL,NULL)); PetscCall(PetscDSSetJacobian(prob,1,0,NULL,g1_qu,NULL,NULL)); PetscCall(PetscDSSetJacobian(prob,1,1,g0_qp,NULL,NULL,NULL)); PetscCall(PetscDSSetJacobian(prob,2,0,NULL,g1_wu,NULL,NULL)); PetscCall(PetscDSSetJacobian(prob,2,1,g0_wp,NULL,NULL,NULL)); PetscCall(PetscDSSetJacobian(prob,2,2,g0_wd,NULL,NULL,NULL)); /* Field 2 is the error between \div{u} and pressure in a higher dimensional * space. If all is right this should be machine zero. */ PetscCall(PetscDSSetExactSolution(prob,2,zero_func,NULL)); switch (user->sol_form) { case LINEAR: PetscCall(PetscDSSetResidual(prob,0,f0_v_linear,NULL)); PetscCall(PetscDSSetBdResidual(prob,0,f0_bd_u_linear,NULL)); PetscCall(PetscDSSetExactSolution(prob,0,linear_u,NULL)); PetscCall(PetscDSSetExactSolution(prob,1,linear_p,NULL)); break; case SINUSOIDAL: PetscCall(PetscDSSetResidual(prob,0,f0_v_sinusoid,NULL)); PetscCall(PetscDSSetBdResidual(prob,0,f0_bd_u_sinusoid,NULL)); PetscCall(PetscDSSetExactSolution(prob,0,sinusoid_u,NULL)); PetscCall(PetscDSSetExactSolution(prob,1,sinusoid_p,NULL)); break; default: PetscFunctionReturn(-1); } PetscCall(DMGetLabel(dm, "marker", &label)); PetscCall(PetscDSAddBoundary(prob,DM_BC_NATURAL,"Boundary Integral",label,1,&id,0,0,NULL,(void (*)(void))NULL,NULL,user,NULL)); PetscFunctionReturn(0); } /* Create the finite element spaces we will use for this system */ static PetscErrorCode SetupDiscretization(DM mesh,PetscErrorCode (*setup)(DM,UserCtx*),UserCtx *user) { DM cdm = mesh; PetscFE fevel,fepres,fedivErr; PetscInt dim; PetscBool simplex; PetscErrorCode ierr; PetscFunctionBegin; PetscCall(DMGetDimension(mesh, &dim)); PetscCall(DMPlexIsSimplex(mesh, &simplex)); /* Create FE objects and give them names so that options can be set from * command line */ PetscCall(PetscFECreateDefault(PetscObjectComm((PetscObject) mesh),dim,dim,simplex,"velocity_",-1,&fevel)); PetscCall(PetscObjectSetName((PetscObject) fevel,"velocity")); PetscCall(PetscFECreateDefault(PetscObjectComm((PetscObject) mesh),dim,1,simplex,"pressure_",-1,&fepres)); PetscCall(PetscObjectSetName((PetscObject) fepres,"pressure")); ierr = PetscFECreateDefault(PetscObjectComm((PetscObject) mesh),dim,1,simplex,"divErr_",-1,&fedivErr);PetscCall(ierr); PetscCall(PetscObjectSetName((PetscObject) fedivErr,"divErr")); PetscCall(PetscFECopyQuadrature(fevel,fepres)); PetscCall(PetscFECopyQuadrature(fevel,fedivErr)); /* Associate the FE objects with the mesh and setup the system */ PetscCall(DMSetField(mesh,0,NULL,(PetscObject) fevel)); PetscCall(DMSetField(mesh,1,NULL,(PetscObject) fepres)); PetscCall(DMSetField(mesh,2,NULL,(PetscObject) fedivErr)); PetscCall(DMCreateDS(mesh)); PetscCall((*setup)(mesh,user)); while (cdm) { PetscCall(DMCopyDisc(mesh,cdm)); PetscCall(DMGetCoarseDM(cdm,&cdm)); } /* The Mesh now owns the fields, so we can destroy the FEs created in this * function */ PetscCall(PetscFEDestroy(&fevel)); PetscCall(PetscFEDestroy(&fepres)); PetscCall(PetscFEDestroy(&fedivErr)); PetscCall(DMDestroy(&cdm)); PetscFunctionReturn(0); } int main(int argc,char **argv) { PetscInt i; UserCtx user; DM mesh; SNES snes; Vec computed,divErr; PetscReal divErrNorm; IS * fieldIS; PetscBool exampleSuccess = PETSC_FALSE; const PetscReal errTol = 10. * PETSC_SMALL; char stdFormat[] = "L2 Norm of the Divergence Error is: %g\n H(div) elements working correctly: %s\n"; /* Initialize PETSc */ PetscCall(PetscInitialize(&argc,&argv,NULL,help)); PetscCall(ProcessOptions(PETSC_COMM_WORLD,&user)); /* Set up the system, we need to create a solver and a mesh and then assign * the correct spaces into the mesh*/ PetscCall(SNESCreate(PETSC_COMM_WORLD,&snes)); PetscCall(CreateMesh(PETSC_COMM_WORLD,&user,&mesh)); PetscCall(SNESSetDM(snes,mesh)); PetscCall(SetupDiscretization(mesh,SetupProblem,&user)); PetscCall(DMPlexSetSNESLocalFEM(mesh,&user,&user,&user)); PetscCall(SNESSetFromOptions(snes)); /* Grab field IS so that we can view the solution by field */ PetscCall(DMCreateFieldIS(mesh,NULL,NULL,&fieldIS)); /* Create a vector to store the SNES solution, solve the system and grab the * solution from SNES */ PetscCall(DMCreateGlobalVector(mesh,&computed)); PetscCall(PetscObjectSetName((PetscObject) computed,"computedSolution")); PetscCall(VecSet(computed,0.0)); PetscCall(SNESSolve(snes,NULL,computed)); PetscCall(SNESGetSolution(snes,&computed)); PetscCall(VecViewFromOptions(computed,NULL,"-computedSolution_view")); /* Now we pull out the portion of the vector corresponding to the 3rd field * which is the error between \div{u} computed in a higher dimensional space * and p = \div{u} computed in a low dimension space. We report the L2 norm of * this vector which should be zero if the H(div) spaces are implemented * correctly. */ PetscCall(VecGetSubVector(computed,fieldIS[2],&divErr)); PetscCall(VecNorm(divErr,NORM_2,&divErrNorm)); PetscCall(VecRestoreSubVector(computed,fieldIS[2],&divErr)); exampleSuccess = (PetscBool)(divErrNorm <= errTol); PetscCall(PetscPrintf(PETSC_COMM_WORLD,stdFormat,divErrNorm,exampleSuccess ? "true" : "false")); /* Tear down */ PetscCall(VecDestroy(&divErr)); PetscCall(VecDestroy(&computed)); for (i = 0; i < 3; ++i) { PetscCall(ISDestroy(&fieldIS[i])); } PetscCall(PetscFree(fieldIS)); PetscCall(SNESDestroy(&snes)); PetscCall(DMDestroy(&mesh)); PetscCall(PetscFinalize()); return 0; } /*TEST testset: suffix: 2d_bdm requires: triangle args: -velocity_petscfe_default_quadrature_order 1 \ -velocity_petscspace_degree 1 \ -velocity_petscdualspace_type bdm \ -divErr_petscspace_degree 1 \ -divErr_petscdualspace_lagrange_continuity false \ -snes_error_if_not_converged \ -ksp_rtol 1e-10 \ -ksp_error_if_not_converged \ -pc_type fieldsplit\ -pc_fieldsplit_detect_saddle_point\ -pc_fieldsplit_type schur\ -pc_fieldsplit_schur_precondition full test: suffix: linear args: -sol_form linear -mesh_transform none test: suffix: sinusoidal args: -sol_form sinusoidal -mesh_transform none test: suffix: sinusoidal_skew args: -sol_form sinusoidal -mesh_transform skew test: suffix: sinusoidal_perturb args: -sol_form sinusoidal -mesh_transform perturb test: suffix: sinusoidal_skew_perturb args: -sol_form sinusoidal -mesh_transform skew_perturb testset: TODO: broken suffix: 2d_bdmq args: -dm_plex_simplex false \ -velocity_petscspace_degree 1 \ -velocity_petscdualspace_type bdm \ -velocity_petscdualspace_lagrange_tensor 1 \ -divErr_petscspace_degree 1 \ -divErr_petscdualspace_lagrange_continuity false \ -snes_error_if_not_converged \ -ksp_rtol 1e-10 \ -ksp_error_if_not_converged \ -pc_type fieldsplit\ -pc_fieldsplit_detect_saddle_point\ -pc_fieldsplit_type schur\ -pc_fieldsplit_schur_precondition full test: suffix: linear args: -sol_form linear -mesh_transform none test: suffix: sinusoidal args: -sol_form sinusoidal -mesh_transform none test: suffix: sinusoidal_skew args: -sol_form sinusoidal -mesh_transform skew test: suffix: sinusoidal_perturb args: -sol_form sinusoidal -mesh_transform perturb test: suffix: sinusoidal_skew_perturb args: -sol_form sinusoidal -mesh_transform skew_perturb testset: suffix: 3d_bdm requires: ctetgen args: -dm_plex_dim 3 \ -velocity_petscspace_degree 1 \ -velocity_petscdualspace_type bdm \ -divErr_petscspace_degree 1 \ -divErr_petscdualspace_lagrange_continuity false \ -snes_error_if_not_converged \ -ksp_rtol 1e-10 \ -ksp_error_if_not_converged \ -pc_type fieldsplit \ -pc_fieldsplit_detect_saddle_point \ -pc_fieldsplit_type schur \ -pc_fieldsplit_schur_precondition full test: suffix: linear args: -sol_form linear -mesh_transform none test: suffix: sinusoidal args: -sol_form sinusoidal -mesh_transform none test: suffix: sinusoidal_skew args: -sol_form sinusoidal -mesh_transform skew test: suffix: sinusoidal_perturb args: -sol_form sinusoidal -mesh_transform perturb test: suffix: sinusoidal_skew_perturb args: -sol_form sinusoidal -mesh_transform skew_perturb testset: TODO: broken suffix: 3d_bdmq requires: ctetgen args: -dm_plex_dim 3 \ -dm_plex_simplex false \ -velocity_petscspace_degree 1 \ -velocity_petscdualspace_type bdm \ -velocity_petscdualspace_lagrange_tensor 1 \ -divErr_petscspace_degree 1 \ -divErr_petscdualspace_lagrange_continuity false \ -snes_error_if_not_converged \ -ksp_rtol 1e-10 \ -ksp_error_if_not_converged \ -pc_type fieldsplit \ -pc_fieldsplit_detect_saddle_point \ -pc_fieldsplit_type schur \ -pc_fieldsplit_schur_precondition full test: suffix: linear args: -sol_form linear -mesh_transform none test: suffix: sinusoidal args: -sol_form sinusoidal -mesh_transform none test: suffix: sinusoidal_skew args: -sol_form sinusoidal -mesh_transform skew test: suffix: sinusoidal_perturb args: -sol_form sinusoidal -mesh_transform perturb test: suffix: sinusoidal_skew_perturb args: -sol_form sinusoidal -mesh_transform skew_perturb test: suffix: quad_rt_0 args: -dm_plex_simplex false -mesh_transform skew \ -divErr_petscspace_degree 1 \ -divErr_petscdualspace_lagrange_continuity false \ -snes_error_if_not_converged \ -ksp_rtol 1e-10 \ -ksp_error_if_not_converged \ -pc_type fieldsplit\ -pc_fieldsplit_detect_saddle_point\ -pc_fieldsplit_type schur\ -pc_fieldsplit_schur_precondition full \ -velocity_petscfe_default_quadrature_order 1 \ -velocity_petscspace_type sum \ -velocity_petscspace_variables 2 \ -velocity_petscspace_components 2 \ -velocity_petscspace_sum_spaces 2 \ -velocity_petscspace_sum_concatenate true \ -velocity_sumcomp_0_petscspace_variables 2 \ -velocity_sumcomp_0_petscspace_type tensor \ -velocity_sumcomp_0_petscspace_tensor_spaces 2 \ -velocity_sumcomp_0_petscspace_tensor_uniform false \ -velocity_sumcomp_0_tensorcomp_0_petscspace_degree 1 \ -velocity_sumcomp_0_tensorcomp_1_petscspace_degree 0 \ -velocity_sumcomp_1_petscspace_variables 2 \ -velocity_sumcomp_1_petscspace_type tensor \ -velocity_sumcomp_1_petscspace_tensor_spaces 2 \ -velocity_sumcomp_1_petscspace_tensor_uniform false \ -velocity_sumcomp_1_tensorcomp_0_petscspace_degree 0 \ -velocity_sumcomp_1_tensorcomp_1_petscspace_degree 1 \ -velocity_petscdualspace_form_degree -1 \ -velocity_petscdualspace_order 1 \ -velocity_petscdualspace_lagrange_trimmed true TEST*/