static char help[] = "Tests VecView() functionality with DMDA objects when using:"\ "(i) a PetscViewer binary with MPI-IO support; and (ii) when the binary header is skipped.\n\n"; #include #include #define DMDA_I 5 #define DMDA_J 4 #define DMDA_K 6 const PetscReal dmda_i_val[] = { 1.10, 2.3006, 2.32444, 3.44006, 66.9009 }; const PetscReal dmda_j_val[] = { 0.0, 0.25, 0.5, 0.75 }; const PetscReal dmda_k_val[] = { 0.0, 1.1, 2.2, 3.3, 4.4, 5.5 }; PetscErrorCode MyVecDump(const char fname[],PetscBool skippheader,PetscBool usempiio,Vec x) { MPI_Comm comm; PetscViewer viewer; PetscBool ismpiio,isskip; PetscFunctionBeginUser; PetscCall(PetscObjectGetComm((PetscObject)x,&comm)); PetscCall(PetscViewerCreate(comm,&viewer)); PetscCall(PetscViewerSetType(viewer,PETSCVIEWERBINARY)); if (skippheader) PetscCall(PetscViewerBinarySetSkipHeader(viewer,PETSC_TRUE)); PetscCall(PetscViewerFileSetMode(viewer,FILE_MODE_WRITE)); if (usempiio) PetscCall(PetscViewerBinarySetUseMPIIO(viewer,PETSC_TRUE)); PetscCall(PetscViewerFileSetName(viewer,fname)); PetscCall(VecView(x,viewer)); PetscCall(PetscViewerBinaryGetUseMPIIO(viewer,&ismpiio)); if (ismpiio) PetscCall(PetscPrintf(comm,"*** PetscViewer[write] using MPI-IO ***\n")); PetscCall(PetscViewerBinaryGetSkipHeader(viewer,&isskip)); if (isskip) PetscCall(PetscPrintf(comm,"*** PetscViewer[write] skipping header ***\n")); PetscCall(PetscViewerDestroy(&viewer)); PetscFunctionReturn(0); } PetscErrorCode MyVecLoad(const char fname[],PetscBool skippheader,PetscBool usempiio,Vec x) { MPI_Comm comm; PetscViewer viewer; PetscBool ismpiio,isskip; PetscFunctionBeginUser; PetscCall(PetscObjectGetComm((PetscObject)x,&comm)); PetscCall(PetscViewerCreate(comm,&viewer)); PetscCall(PetscViewerSetType(viewer,PETSCVIEWERBINARY)); if (skippheader) PetscCall(PetscViewerBinarySetSkipHeader(viewer,PETSC_TRUE)); PetscCall(PetscViewerFileSetMode(viewer,FILE_MODE_READ)); if (usempiio) PetscCall(PetscViewerBinarySetUseMPIIO(viewer,PETSC_TRUE)); PetscCall(PetscViewerFileSetName(viewer,fname)); PetscCall(VecLoad(x,viewer)); PetscCall(PetscViewerBinaryGetSkipHeader(viewer,&isskip)); if (isskip) PetscCall(PetscPrintf(comm,"*** PetscViewer[load] skipping header ***\n")); PetscCall(PetscViewerBinaryGetUseMPIIO(viewer,&ismpiio)); if (ismpiio) PetscCall(PetscPrintf(comm,"*** PetscViewer[load] using MPI-IO ***\n")); PetscCall(PetscViewerDestroy(&viewer)); PetscFunctionReturn(0); } PetscErrorCode DMDAVecGenerateEntries(DM dm,Vec a) { PetscScalar ****LA_v; PetscInt i,j,k,l,si,sj,sk,ni,nj,nk,M,N,dof; PetscFunctionBeginUser; PetscCall(DMDAGetInfo(dm,NULL,&M,&N,NULL,NULL,NULL,NULL,&dof,NULL,NULL,NULL,NULL,NULL)); PetscCall(DMDAGetCorners(dm,&si,&sj,&sk,&ni,&nj,&nk)); PetscCall(DMDAVecGetArrayDOF(dm,a,&LA_v)); for (k=sk; k 1.0e-10) || (PetscImaginaryPart(v) > 1.0e-10)) { PetscCall(PetscPrintf(PETSC_COMM_SELF,"ERROR: Difference > 1.0e-10 occurred (delta = (%+1.12e,%+1.12e) [loc %" PetscInt_FMT ",%" PetscInt_FMT ",%" PetscInt_FMT "(%" PetscInt_FMT ")])\n",(double)PetscRealPart(test_value),(double)PetscImaginaryPart(test_value),i,j,k,d)); dataverified = PETSC_FALSE; } #else if (PetscRealPart(v) > 1.0e-10) { PetscCall(PetscPrintf(PETSC_COMM_SELF,"ERROR: Difference > 1.0e-10 occurred (delta = %+1.12e [loc %" PetscInt_FMT ",%" PetscInt_FMT ",%" PetscInt_FMT "(%" PetscInt_FMT ")])\n",(double)PetscRealPart(test_value),i,j,k,d)); dataverified = PETSC_FALSE; } #endif } } } } if (dataverified) { PetscCall(PetscPrintf(PETSC_COMM_SELF,"Headerless read of data verified for: %s\n",name)); } } PetscFunctionReturn(0); } PetscErrorCode VecCompare(Vec a,Vec b) { PetscInt locmin[2],locmax[2]; PetscReal min[2],max[2]; Vec ref; PetscFunctionBeginUser; PetscCall(VecMin(a,&locmin[0],&min[0])); PetscCall(VecMax(a,&locmax[0],&max[0])); PetscCall(VecMin(b,&locmin[1],&min[1])); PetscCall(VecMax(b,&locmax[1],&max[1])); PetscCall(PetscPrintf(PETSC_COMM_WORLD,"VecCompare\n")); PetscCall(PetscPrintf(PETSC_COMM_WORLD," min(a) = %+1.2e [loc %" PetscInt_FMT "]\n",(double)min[0],locmin[0])); PetscCall(PetscPrintf(PETSC_COMM_WORLD," max(a) = %+1.2e [loc %" PetscInt_FMT "]\n",(double)max[0],locmax[0])); PetscCall(PetscPrintf(PETSC_COMM_WORLD," min(b) = %+1.2e [loc %" PetscInt_FMT "]\n",(double)min[1],locmin[1])); PetscCall(PetscPrintf(PETSC_COMM_WORLD," max(b) = %+1.2e [loc %" PetscInt_FMT "]\n",(double)max[1],locmax[1])); PetscCall(VecDuplicate(a,&ref)); PetscCall(VecCopy(a,ref)); PetscCall(VecAXPY(ref,-1.0,b)); PetscCall(VecMin(ref,&locmin[0],&min[0])); if (PetscAbsReal(min[0]) > 1.0e-10) { PetscCall(PetscPrintf(PETSC_COMM_WORLD," ERROR: min(a-b) > 1.0e-10\n")); PetscCall(PetscPrintf(PETSC_COMM_WORLD," min(a-b) = %+1.10e\n",(double)PetscAbsReal(min[0]))); } else { PetscCall(PetscPrintf(PETSC_COMM_WORLD," min(a-b) < 1.0e-10\n")); } PetscCall(VecDestroy(&ref)); PetscFunctionReturn(0); } PetscErrorCode TestDMDAVec(PetscBool usempiio) { DM dm; Vec x_ref,x_test; PetscBool skipheader = PETSC_TRUE; PetscFunctionBeginUser; if (!usempiio) PetscCall(PetscPrintf(PETSC_COMM_WORLD,"%s\n",PETSC_FUNCTION_NAME)); else PetscCall(PetscPrintf(PETSC_COMM_WORLD,"%s [using mpi-io]\n",PETSC_FUNCTION_NAME)); PetscCall(DMDACreate3d(PETSC_COMM_WORLD,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,DMDA_I,DMDA_J,DMDA_K,PETSC_DECIDE,PETSC_DECIDE,PETSC_DECIDE, 3,2,NULL,NULL,NULL,&dm)); PetscCall(DMSetFromOptions(dm)); PetscCall(DMSetUp(dm)); PetscCall(DMCreateGlobalVector(dm,&x_ref)); PetscCall(DMDAVecGenerateEntries(dm,x_ref)); if (!usempiio) { PetscCall(MyVecDump("dmda.pbvec",skipheader,PETSC_FALSE,x_ref)); } else { PetscCall(MyVecDump("dmda-mpiio.pbvec",skipheader,PETSC_TRUE,x_ref)); } PetscCall(DMCreateGlobalVector(dm,&x_test)); if (!usempiio) { PetscCall(MyVecLoad("dmda.pbvec",skipheader,usempiio,x_test)); } else { PetscCall(MyVecLoad("dmda-mpiio.pbvec",skipheader,usempiio,x_test)); } PetscCall(VecCompare(x_ref,x_test)); if (!usempiio) { PetscCall(HeaderlessBinaryReadCheck(dm,"dmda.pbvec")); } else { PetscCall(HeaderlessBinaryReadCheck(dm,"dmda-mpiio.pbvec")); } PetscCall(VecDestroy(&x_ref)); PetscCall(VecDestroy(&x_test)); PetscCall(DMDestroy(&dm)); PetscFunctionReturn(0); } int main(int argc,char **args) { PetscBool usempiio = PETSC_FALSE; PetscCall(PetscInitialize(&argc,&args,(char*)0,help)); PetscCall(PetscOptionsGetBool(NULL,NULL,"-usempiio",&usempiio,NULL)); if (!usempiio) { PetscCall(TestDMDAVec(PETSC_FALSE)); } else { #if defined(PETSC_HAVE_MPIIO) PetscCall(TestDMDAVec(PETSC_TRUE)); #else PetscCall(PetscPrintf(PETSC_COMM_WORLD,"Warning: Executing TestDMDAVec(PETSC_TRUE) requires a working MPI-2 implementation\n")); #endif } PetscCall(PetscFinalize()); return 0; } /*TEST test: test: suffix: 2 nsize: 12 test: suffix: 3 nsize: 12 requires: defined(PETSC_HAVE_MPIIO) args: -usempiio TEST*/