/* Defines a direct factorization preconditioner for any Mat implementation Note: this need not be considered a preconditioner since it supplies a direct solver. */ #include <../src/ksp/pc/impls/factor/lu/lu.h> /*I "petscpc.h" I*/ static PetscErrorCode PCFactorReorderForNonzeroDiagonal_LU(PC pc, PetscReal z) { PC_LU *lu = (PC_LU *)pc->data; PetscFunctionBegin; lu->nonzerosalongdiagonal = PETSC_TRUE; if (z == (PetscReal)PETSC_DECIDE) lu->nonzerosalongdiagonaltol = 1.e-10; else lu->nonzerosalongdiagonaltol = z; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PCSetFromOptions_LU(PC pc, PetscOptionItems PetscOptionsObject) { PC_LU *lu = (PC_LU *)pc->data; PetscBool flg = PETSC_FALSE; PetscReal tol; PetscFunctionBegin; PetscOptionsHeadBegin(PetscOptionsObject, "LU options"); PetscCall(PCSetFromOptions_Factor(pc, PetscOptionsObject)); PetscCall(PetscOptionsName("-pc_factor_nonzeros_along_diagonal", "Reorder to remove zeros from diagonal", "PCFactorReorderForNonzeroDiagonal", &flg)); if (flg) { tol = PETSC_DECIDE; PetscCall(PetscOptionsReal("-pc_factor_nonzeros_along_diagonal", "Reorder to remove zeros from diagonal", "PCFactorReorderForNonzeroDiagonal", lu->nonzerosalongdiagonaltol, &tol, NULL)); PetscCall(PCFactorReorderForNonzeroDiagonal(pc, tol)); } PetscOptionsHeadEnd(); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PCSetUp_LU(PC pc) { PC_LU *dir = (PC_LU *)pc->data; MatSolverType stype; MatFactorError err; const char *prefix; PetscFunctionBegin; pc->failedreason = PC_NOERROR; if (dir->hdr.reusefill && pc->setupcalled) ((PC_Factor *)dir)->info.fill = dir->hdr.actualfill; PetscCall(PCGetOptionsPrefix(pc, &prefix)); PetscCall(MatSetOptionsPrefixFactor(pc->pmat, prefix)); PetscCall(MatSetErrorIfFailure(pc->pmat, pc->erroriffailure)); if (dir->hdr.inplace) { MatFactorType ftype; PetscCall(MatGetFactorType(pc->pmat, &ftype)); if (ftype == MAT_FACTOR_NONE) { if (dir->row && dir->col && dir->row != dir->col) PetscCall(ISDestroy(&dir->row)); PetscCall(ISDestroy(&dir->col)); /* This should only get the ordering if needed, but since MatGetFactor() is not called we can't know if it is needed */ PetscCall(PCFactorSetDefaultOrdering_Factor(pc)); PetscCall(MatGetOrdering(pc->pmat, ((PC_Factor *)dir)->ordering, &dir->row, &dir->col)); PetscCall(MatLUFactor(pc->pmat, dir->row, dir->col, &((PC_Factor *)dir)->info)); PetscCall(MatFactorGetError(pc->pmat, &err)); if (err) { /* Factor() fails */ pc->failedreason = (PCFailedReason)err; PetscFunctionReturn(PETSC_SUCCESS); } } ((PC_Factor *)dir)->fact = pc->pmat; } else { MatInfo info; if (!pc->setupcalled) { PetscBool canuseordering; PetscCall(PCFactorSetUpMatSolverType(pc)); PetscCall(MatFactorGetCanUseOrdering(((PC_Factor *)dir)->fact, &canuseordering)); if (canuseordering) { PetscBool external; PetscCall(PCFactorSetDefaultOrdering_Factor(pc)); PetscCall(PetscStrcmp(((PC_Factor *)dir)->ordering, MATORDERINGEXTERNAL, &external)); if (!external) { PetscCall(MatGetOrdering(pc->pmat, ((PC_Factor *)dir)->ordering, &dir->row, &dir->col)); if (dir->nonzerosalongdiagonal) PetscCall(MatReorderForNonzeroDiagonal(pc->pmat, dir->nonzerosalongdiagonaltol, dir->row, dir->col)); } } PetscCall(MatLUFactorSymbolic(((PC_Factor *)dir)->fact, pc->pmat, dir->row, dir->col, &((PC_Factor *)dir)->info)); PetscCall(MatGetInfo(((PC_Factor *)dir)->fact, MAT_LOCAL, &info)); dir->hdr.actualfill = info.fill_ratio_needed; } else if (pc->flag != SAME_NONZERO_PATTERN) { PetscBool canuseordering; if (!dir->hdr.reuseordering) { PetscCall(MatDestroy(&((PC_Factor *)dir)->fact)); PetscCall(PCFactorSetUpMatSolverType(pc)); PetscCall(MatFactorGetCanUseOrdering(((PC_Factor *)dir)->fact, &canuseordering)); if (canuseordering) { PetscBool external; if (dir->row && dir->col && dir->row != dir->col) PetscCall(ISDestroy(&dir->row)); PetscCall(ISDestroy(&dir->col)); PetscCall(PCFactorSetDefaultOrdering_Factor(pc)); PetscCall(PetscStrcmp(((PC_Factor *)dir)->ordering, MATORDERINGEXTERNAL, &external)); if (!external) { PetscCall(MatGetOrdering(pc->pmat, ((PC_Factor *)dir)->ordering, &dir->row, &dir->col)); if (dir->nonzerosalongdiagonal) PetscCall(MatReorderForNonzeroDiagonal(pc->pmat, dir->nonzerosalongdiagonaltol, dir->row, dir->col)); } } } PetscCall(MatLUFactorSymbolic(((PC_Factor *)dir)->fact, pc->pmat, dir->row, dir->col, &((PC_Factor *)dir)->info)); PetscCall(MatGetInfo(((PC_Factor *)dir)->fact, MAT_LOCAL, &info)); dir->hdr.actualfill = info.fill_ratio_needed; } else { PetscCall(MatFactorGetError(((PC_Factor *)dir)->fact, &err)); if (err == MAT_FACTOR_NUMERIC_ZEROPIVOT) { PetscCall(MatFactorClearError(((PC_Factor *)dir)->fact)); pc->failedreason = PC_NOERROR; } } PetscCall(MatFactorGetError(((PC_Factor *)dir)->fact, &err)); if (err) { /* FactorSymbolic() fails */ pc->failedreason = (PCFailedReason)err; PetscFunctionReturn(PETSC_SUCCESS); } PetscCall(MatLUFactorNumeric(((PC_Factor *)dir)->fact, pc->pmat, &((PC_Factor *)dir)->info)); PetscCall(MatFactorGetError(((PC_Factor *)dir)->fact, &err)); if (err) { /* FactorNumeric() fails */ pc->failedreason = (PCFailedReason)err; } } PetscCall(PCFactorGetMatSolverType(pc, &stype)); if (!stype) { MatSolverType solverpackage; PetscCall(MatFactorGetSolverType(((PC_Factor *)dir)->fact, &solverpackage)); PetscCall(PCFactorSetMatSolverType(pc, solverpackage)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PCReset_LU(PC pc) { PC_LU *dir = (PC_LU *)pc->data; PetscFunctionBegin; if (!dir->hdr.inplace && ((PC_Factor *)dir)->fact) PetscCall(MatDestroy(&((PC_Factor *)dir)->fact)); if (dir->row && dir->col && dir->row != dir->col) PetscCall(ISDestroy(&dir->row)); PetscCall(ISDestroy(&dir->col)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PCDestroy_LU(PC pc) { PC_LU *dir = (PC_LU *)pc->data; PetscFunctionBegin; PetscCall(PCReset_LU(pc)); PetscCall(PetscFree(((PC_Factor *)dir)->ordering)); PetscCall(PetscFree(((PC_Factor *)dir)->solvertype)); PetscCall(PCFactorClearComposedFunctions(pc)); PetscCall(PetscFree(pc->data)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PCApply_LU(PC pc, Vec x, Vec y) { PC_LU *dir = (PC_LU *)pc->data; PetscFunctionBegin; if (dir->hdr.inplace) { PetscCall(MatSolve(pc->pmat, x, y)); } else { PetscCall(MatSolve(((PC_Factor *)dir)->fact, x, y)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PCMatApply_LU(PC pc, Mat X, Mat Y) { PC_LU *dir = (PC_LU *)pc->data; PetscFunctionBegin; if (dir->hdr.inplace) { PetscCall(MatMatSolve(pc->pmat, X, Y)); } else { PetscCall(MatMatSolve(((PC_Factor *)dir)->fact, X, Y)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PCApplyTranspose_LU(PC pc, Vec x, Vec y) { PC_LU *dir = (PC_LU *)pc->data; PetscFunctionBegin; if (dir->hdr.inplace) { PetscCall(MatSolveTranspose(pc->pmat, x, y)); } else { PetscCall(MatSolveTranspose(((PC_Factor *)dir)->fact, x, y)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PCMatApplyTranspose_LU(PC pc, Mat X, Mat Y) { PC_LU *dir = (PC_LU *)pc->data; PetscFunctionBegin; if (dir->hdr.inplace) { PetscCall(MatMatSolveTranspose(pc->pmat, X, Y)); } else { PetscCall(MatMatSolveTranspose(((PC_Factor *)dir)->fact, X, Y)); } PetscFunctionReturn(PETSC_SUCCESS); } /*MC PCLU - Uses a direct solver, based on LU factorization, as a preconditioner Options Database Keys: + -pc_factor_reuse_ordering - Activate `PCFactorSetReuseOrdering()` . -pc_factor_mat_solver_type - Actives `PCFactorSetMatSolverType()` to choose the direct solver, like superlu . -pc_factor_reuse_fill - Activates `PCFactorSetReuseFill()` . -pc_factor_fill - Sets fill amount . -pc_factor_in_place - Activates in-place factorization . -pc_factor_mat_ordering_type - Sets ordering routine . -pc_factor_pivot_in_blocks - allow pivoting within the small blocks during factorization (may increase stability of factorization. . -pc_factor_shift_type - Sets shift type or -1 for the default; use '-help' for a list of available types . -pc_factor_shift_amount - Sets shift amount or -1 for the default . -pc_factor_nonzeros_along_diagonal - permutes the rows and columns to try to put nonzero value along the diagonal. . -pc_factor_mat_solver_type - use an external package for the solve, see `MatSolverType` for possibilities - -mat_solvertype_optionname - options for a specific solver package, for example -mat_mumps_cntl_1 Level: beginner Notes: Not all options work for all matrix formats Run with `-help` to see additional options for particular matrix formats or factorization algorithms The Cholesky factorization direct solver, `PCCHOLESKY` will be more efficient than `PCLU` for symmetric positive-definite (SPD) matrices Usually this will compute an "exact" solution in one iteration and does not need a Krylov method (i.e. you can use -ksp_type preonly, or `KSPSetType`(ksp,`KSPPREONLY`) for the Krylov method. .seealso: [](ch_ksp), `PCCreate()`, `PCSetType()`, `PCType`, `PC`, `MatSolverType`, `MatGetFactor()`, `PCQR`, `PCSVD`, `PCILU`, `PCCHOLESKY`, `PCICC`, `PCFactorSetReuseOrdering()`, `PCFactorSetReuseFill()`, `PCFactorGetMatrix()`, `PCFactorSetFill()`, `PCFactorSetUseInPlace()`, `PCFactorSetMatOrderingType()`, `PCFactorSetColumnPivot()`, `PCFactorSetPivotInBlocks()`, `PCFactorSetShiftType()`, `PCFactorSetShiftAmount()` `PCFactorReorderForNonzeroDiagonal()` M*/ PETSC_EXTERN PetscErrorCode PCCreate_LU(PC pc) { PC_LU *dir; PetscFunctionBegin; PetscCall(PetscNew(&dir)); pc->data = (void *)dir; PetscCall(PCFactorInitialize(pc, MAT_FACTOR_LU)); dir->nonzerosalongdiagonal = PETSC_FALSE; ((PC_Factor *)dir)->info.fill = 5.0; ((PC_Factor *)dir)->info.dtcol = 1.e-6; /* default to pivoting; this is only thing PETSc LU supports */ ((PC_Factor *)dir)->info.shifttype = (PetscReal)MAT_SHIFT_NONE; dir->col = NULL; dir->row = NULL; pc->ops->reset = PCReset_LU; pc->ops->destroy = PCDestroy_LU; pc->ops->apply = PCApply_LU; pc->ops->matapply = PCMatApply_LU; pc->ops->applytranspose = PCApplyTranspose_LU; pc->ops->matapplytranspose = PCMatApplyTranspose_LU; pc->ops->setup = PCSetUp_LU; pc->ops->setfromoptions = PCSetFromOptions_LU; pc->ops->view = PCView_Factor; pc->ops->applyrichardson = NULL; PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCFactorReorderForNonzeroDiagonal_C", PCFactorReorderForNonzeroDiagonal_LU)); PetscFunctionReturn(PETSC_SUCCESS); }