#include #include #include /* Use GPU only if H2OPUS is configured for GPU */ #if defined(PETSC_HAVE_CUDA) && defined(H2OPUS_USE_GPU) #define PETSC_H2OPUS_USE_GPU #endif typedef struct { Mat A; Mat M; PetscScalar s0; /* sampler for Newton-Schultz */ Mat S; PetscInt hyperorder; Vec wns[4]; Mat wnsmat[4]; /* convergence testing */ Mat T; Vec w; PetscBool testMA; /* Support for PCSetCoordinates */ PetscInt sdim; PetscInt nlocc; PetscReal *coords; /* Newton-Schultz customization */ PetscInt maxits; PetscReal rtol,atol; PetscBool monitor; PetscBool useapproximatenorms; NormType normtype; /* Used when pmat != MATH2OPUS */ PetscReal eta; PetscInt leafsize; PetscInt max_rank; PetscInt bs; PetscReal mrtol; PetscBool boundtocpu; } PC_H2OPUS; PETSC_EXTERN PetscErrorCode MatNorm_H2OPUS(Mat,NormType,PetscReal*); static PetscErrorCode PCReset_H2OPUS(PC pc) { PC_H2OPUS *pch2opus = (PC_H2OPUS*)pc->data; PetscErrorCode ierr; PetscFunctionBegin; pch2opus->sdim = 0; pch2opus->nlocc = 0; ierr = PetscFree(pch2opus->coords);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->A);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->M);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->T);CHKERRQ(ierr); ierr = VecDestroy(&pch2opus->w);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->S);CHKERRQ(ierr); ierr = VecDestroy(&pch2opus->wns[0]);CHKERRQ(ierr); ierr = VecDestroy(&pch2opus->wns[1]);CHKERRQ(ierr); ierr = VecDestroy(&pch2opus->wns[2]);CHKERRQ(ierr); ierr = VecDestroy(&pch2opus->wns[3]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[0]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[1]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[2]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[3]);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCSetCoordinates_H2OPUS(PC pc, PetscInt sdim, PetscInt nlocc, PetscReal *coords) { PC_H2OPUS *pch2opus = (PC_H2OPUS*)pc->data; PetscBool reset = PETSC_TRUE; PetscErrorCode ierr; PetscFunctionBegin; if (pch2opus->sdim && sdim == pch2opus->sdim && nlocc == pch2opus->nlocc) { ierr = PetscArraycmp(pch2opus->coords,coords,sdim*nlocc,&reset);CHKERRQ(ierr); reset = (PetscBool)!reset; } ierr = MPIU_Allreduce(MPI_IN_PLACE,&reset,1,MPIU_BOOL,MPI_LOR,PetscObjectComm((PetscObject)pc));CHKERRMPI(ierr); if (reset) { ierr = PCReset_H2OPUS(pc);CHKERRQ(ierr); ierr = PetscMalloc1(sdim*nlocc,&pch2opus->coords);CHKERRQ(ierr); ierr = PetscArraycpy(pch2opus->coords,coords,sdim*nlocc);CHKERRQ(ierr); pch2opus->sdim = sdim; pch2opus->nlocc = nlocc; } PetscFunctionReturn(0); } static PetscErrorCode PCDestroy_H2OPUS(PC pc) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PCReset_H2OPUS(pc);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)pc,"PCSetCoordinates_C",NULL);CHKERRQ(ierr); ierr = PetscFree(pc->data);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCSetFromOptions_H2OPUS(PetscOptionItems *PetscOptionsObject,PC pc) { PC_H2OPUS *pch2opus = (PC_H2OPUS*)pc->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscOptionsHead(PetscOptionsObject,"H2OPUS options");CHKERRQ(ierr); ierr = PetscOptionsInt("-pc_h2opus_maxits","Maximum number of iterations for Newton-Schultz",NULL,pch2opus->maxits,&pch2opus->maxits,NULL);CHKERRQ(ierr); ierr = PetscOptionsBool("-pc_h2opus_monitor","Monitor Newton-Schultz convergence",NULL,pch2opus->monitor,&pch2opus->monitor,NULL);CHKERRQ(ierr); ierr = PetscOptionsReal("-pc_h2opus_atol","Absolute tolerance",NULL,pch2opus->atol,&pch2opus->atol,NULL);CHKERRQ(ierr); ierr = PetscOptionsReal("-pc_h2opus_rtol","Relative tolerance",NULL,pch2opus->rtol,&pch2opus->rtol,NULL);CHKERRQ(ierr); ierr = PetscOptionsEnum("-pc_h2opus_norm_type","Norm type for convergence monitoring",NULL,NormTypes,(PetscEnum)pch2opus->normtype,(PetscEnum*)&pch2opus->normtype,NULL);CHKERRQ(ierr); ierr = PetscOptionsInt("-pc_h2opus_hyperorder","Hyper power order of sampling",NULL,pch2opus->hyperorder,&pch2opus->hyperorder,NULL);CHKERRQ(ierr); ierr = PetscOptionsInt("-pc_h2opus_leafsize","Leaf size when constructed from kernel",NULL,pch2opus->leafsize,&pch2opus->leafsize,NULL);CHKERRQ(ierr); ierr = PetscOptionsReal("-pc_h2opus_eta","Admissibility condition tolerance",NULL,pch2opus->eta,&pch2opus->eta,NULL);CHKERRQ(ierr); ierr = PetscOptionsInt("-pc_h2opus_maxrank","Maximum rank when constructed from matvecs",NULL,pch2opus->max_rank,&pch2opus->max_rank,NULL);CHKERRQ(ierr); ierr = PetscOptionsInt("-pc_h2opus_samples","Number of samples to be taken concurrently when constructing from matvecs",NULL,pch2opus->bs,&pch2opus->bs,NULL);CHKERRQ(ierr); ierr = PetscOptionsReal("-pc_h2opus_mrtol","Relative tolerance for construction from sampling",NULL,pch2opus->mrtol,&pch2opus->mrtol,NULL);CHKERRQ(ierr); ierr = PetscOptionsTail();CHKERRQ(ierr); PetscFunctionReturn(0); } typedef struct { Mat A; Mat M; Vec w; } AAtCtx; static PetscErrorCode MatMult_AAt(Mat A, Vec x, Vec y) { AAtCtx *aat; PetscErrorCode ierr; PetscFunctionBegin; ierr = MatShellGetContext(A,(void*)&aat);CHKERRQ(ierr); /* ierr = MatMultTranspose(aat->M,x,aat->w);CHKERRQ(ierr); */ ierr = MatMultTranspose(aat->A,x,aat->w);CHKERRQ(ierr); ierr = MatMult(aat->A,aat->w,y);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCH2OpusSetUpInit(PC pc) { PC_H2OPUS *pch2opus = (PC_H2OPUS*)pc->data; Mat A = pc->useAmat ? pc->mat : pc->pmat, AAt; PetscInt M,m; VecType vtype; PetscReal n; AAtCtx aat; PetscErrorCode ierr; PetscFunctionBegin; aat.A = A; aat.M = pch2opus->M; /* unused so far */ ierr = MatCreateVecs(A,NULL,&aat.w);CHKERRQ(ierr); ierr = MatGetSize(A,&M,NULL);CHKERRQ(ierr); ierr = MatGetLocalSize(A,&m,NULL);CHKERRQ(ierr); ierr = MatCreateShell(PetscObjectComm((PetscObject)A),m,m,M,M,&aat,&AAt);CHKERRQ(ierr); ierr = MatBindToCPU(AAt,pch2opus->boundtocpu);CHKERRQ(ierr); ierr = MatShellSetOperation(AAt,MATOP_MULT,(void (*)(void))MatMult_AAt);CHKERRQ(ierr); ierr = MatShellSetOperation(AAt,MATOP_MULT_TRANSPOSE,(void (*)(void))MatMult_AAt);CHKERRQ(ierr); ierr = MatShellSetOperation(AAt,MATOP_NORM,(void (*)(void))MatNorm_H2OPUS);CHKERRQ(ierr); ierr = MatGetVecType(A,&vtype);CHKERRQ(ierr); ierr = MatShellSetVecType(AAt,vtype);CHKERRQ(ierr); ierr = MatNorm(AAt,NORM_1,&n);CHKERRQ(ierr); pch2opus->s0 = 1./n; ierr = VecDestroy(&aat.w);CHKERRQ(ierr); ierr = MatDestroy(&AAt);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCApplyKernel_H2OPUS(PC pc, Vec x, Vec y, PetscBool t) { PC_H2OPUS *pch2opus = (PC_H2OPUS*)pc->data; PetscErrorCode ierr; PetscFunctionBegin; if (t) { ierr = MatMultTranspose(pch2opus->M,x,y);CHKERRQ(ierr); } else { ierr = MatMult(pch2opus->M,x,y);CHKERRQ(ierr); } PetscFunctionReturn(0); } static PetscErrorCode PCApplyMatKernel_H2OPUS(PC pc, Mat X, Mat Y, PetscBool t) { PC_H2OPUS *pch2opus = (PC_H2OPUS*)pc->data; PetscErrorCode ierr; PetscFunctionBegin; if (t) { ierr = MatTransposeMatMult(pch2opus->M,X,MAT_REUSE_MATRIX,PETSC_DEFAULT,&Y);CHKERRQ(ierr); } else { ierr = MatMatMult(pch2opus->M,X,MAT_REUSE_MATRIX,PETSC_DEFAULT,&Y);CHKERRQ(ierr); } PetscFunctionReturn(0); } static PetscErrorCode PCApplyMat_H2OPUS(PC pc, Mat X, Mat Y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PCApplyMatKernel_H2OPUS(pc,X,Y,PETSC_FALSE);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCApplyTransposeMat_H2OPUS(PC pc, Mat X, Mat Y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PCApplyMatKernel_H2OPUS(pc,X,Y,PETSC_TRUE);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCApply_H2OPUS(PC pc, Vec x, Vec y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PCApplyKernel_H2OPUS(pc,x,y,PETSC_FALSE);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCApplyTranspose_H2OPUS(PC pc, Vec x, Vec y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PCApplyKernel_H2OPUS(pc,x,y,PETSC_TRUE);CHKERRQ(ierr); PetscFunctionReturn(0); } /* used to test the norm of (M^-1 A - I) */ static PetscErrorCode MatMultKernel_MAmI(Mat M, Vec x, Vec y, PetscBool t) { PC pc; Mat A; PC_H2OPUS *pch2opus; PetscErrorCode ierr; PetscBool sideleft = PETSC_TRUE; PetscFunctionBegin; ierr = MatShellGetContext(M,(void*)&pc);CHKERRQ(ierr); pch2opus = (PC_H2OPUS*)pc->data; if (!pch2opus->w) { ierr = MatCreateVecs(pch2opus->M,&pch2opus->w,NULL);CHKERRQ(ierr); } A = pch2opus->A; ierr = VecBindToCPU(pch2opus->w,pch2opus->boundtocpu);CHKERRQ(ierr); if (t) { if (sideleft) { ierr = PCApplyTranspose_H2OPUS(pc,x,pch2opus->w);CHKERRQ(ierr); ierr = MatMultTranspose(A,pch2opus->w,y);CHKERRQ(ierr); } else { ierr = MatMultTranspose(A,x,pch2opus->w);CHKERRQ(ierr); ierr = PCApplyTranspose_H2OPUS(pc,pch2opus->w,y);CHKERRQ(ierr); } } else { if (sideleft) { ierr = MatMult(A,x,pch2opus->w);CHKERRQ(ierr); ierr = PCApply_H2OPUS(pc,pch2opus->w,y);CHKERRQ(ierr); } else { ierr = PCApply_H2OPUS(pc,x,pch2opus->w);CHKERRQ(ierr); ierr = MatMult(A,pch2opus->w,y);CHKERRQ(ierr); } } if (!pch2opus->testMA) { ierr = VecAXPY(y,-1.0,x);CHKERRQ(ierr); } PetscFunctionReturn(0); } static PetscErrorCode MatMult_MAmI(Mat A, Vec x, Vec y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = MatMultKernel_MAmI(A,x,y,PETSC_FALSE);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode MatMultTranspose_MAmI(Mat A, Vec x, Vec y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = MatMultKernel_MAmI(A,x,y,PETSC_TRUE);CHKERRQ(ierr); PetscFunctionReturn(0); } /* HyperPower kernel: Y = R = x for i = 1 . . . l - 1 do R = (I - A * Xk) * R Y = Y + R Y = Xk * Y */ static PetscErrorCode MatMultKernel_Hyper(Mat M, Vec x, Vec y, PetscBool t) { PC pc; Mat A; PC_H2OPUS *pch2opus; PetscInt i; PetscErrorCode ierr; PetscFunctionBegin; ierr = MatShellGetContext(M,(void*)&pc);CHKERRQ(ierr); pch2opus = (PC_H2OPUS*)pc->data; A = pch2opus->A; ierr = MatCreateVecs(pch2opus->M,pch2opus->wns[0] ? NULL : &pch2opus->wns[0],pch2opus->wns[1] ? NULL : &pch2opus->wns[1]);CHKERRQ(ierr); ierr = MatCreateVecs(pch2opus->M,pch2opus->wns[2] ? NULL : &pch2opus->wns[2],pch2opus->wns[3] ? NULL : &pch2opus->wns[3]);CHKERRQ(ierr); ierr = VecBindToCPU(pch2opus->wns[0],pch2opus->boundtocpu);CHKERRQ(ierr); ierr = VecBindToCPU(pch2opus->wns[1],pch2opus->boundtocpu);CHKERRQ(ierr); ierr = VecBindToCPU(pch2opus->wns[2],pch2opus->boundtocpu);CHKERRQ(ierr); ierr = VecBindToCPU(pch2opus->wns[3],pch2opus->boundtocpu);CHKERRQ(ierr); ierr = VecCopy(x,pch2opus->wns[0]);CHKERRQ(ierr); ierr = VecCopy(x,pch2opus->wns[3]);CHKERRQ(ierr); if (t) { for (i=0;ihyperorder-1;i++) { ierr = MatMultTranspose(A,pch2opus->wns[0],pch2opus->wns[1]);CHKERRQ(ierr); ierr = PCApplyTranspose_H2OPUS(pc,pch2opus->wns[1],pch2opus->wns[2]);CHKERRQ(ierr); ierr = VecAXPY(pch2opus->wns[0],-1.,pch2opus->wns[2]);CHKERRQ(ierr); ierr = VecAXPY(pch2opus->wns[3], 1.,pch2opus->wns[0]);CHKERRQ(ierr); } ierr = PCApplyTranspose_H2OPUS(pc,pch2opus->wns[3],y);CHKERRQ(ierr); } else { for (i=0;ihyperorder-1;i++) { ierr = PCApply_H2OPUS(pc,pch2opus->wns[0],pch2opus->wns[1]);CHKERRQ(ierr); ierr = MatMult(A,pch2opus->wns[1],pch2opus->wns[2]);CHKERRQ(ierr); ierr = VecAXPY(pch2opus->wns[0],-1.,pch2opus->wns[2]);CHKERRQ(ierr); ierr = VecAXPY(pch2opus->wns[3], 1.,pch2opus->wns[0]);CHKERRQ(ierr); } ierr = PCApply_H2OPUS(pc,pch2opus->wns[3],y);CHKERRQ(ierr); } PetscFunctionReturn(0); } static PetscErrorCode MatMult_Hyper(Mat M, Vec x, Vec y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = MatMultKernel_Hyper(M,x,y,PETSC_FALSE);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode MatMultTranspose_Hyper(Mat M, Vec x, Vec y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = MatMultKernel_Hyper(M,x,y,PETSC_TRUE);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Hyper power kernel, MatMat version */ static PetscErrorCode MatMatMultKernel_Hyper(Mat M, Mat X, Mat Y, PetscBool t) { PC pc; Mat A; PC_H2OPUS *pch2opus; PetscInt i; PetscErrorCode ierr; PetscFunctionBegin; ierr = MatShellGetContext(M,(void*)&pc);CHKERRQ(ierr); pch2opus = (PC_H2OPUS*)pc->data; A = pch2opus->A; if (pch2opus->wnsmat[0] && pch2opus->wnsmat[0]->cmap->N != X->cmap->N) { ierr = MatDestroy(&pch2opus->wnsmat[0]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[1]);CHKERRQ(ierr); } if (!pch2opus->wnsmat[0]) { ierr = MatDuplicate(X,MAT_SHARE_NONZERO_PATTERN,&pch2opus->wnsmat[0]);CHKERRQ(ierr); ierr = MatDuplicate(Y,MAT_SHARE_NONZERO_PATTERN,&pch2opus->wnsmat[1]);CHKERRQ(ierr); } if (pch2opus->wnsmat[2] && pch2opus->wnsmat[2]->cmap->N != X->cmap->N) { ierr = MatDestroy(&pch2opus->wnsmat[2]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[3]);CHKERRQ(ierr); } if (!pch2opus->wnsmat[2]) { ierr = MatDuplicate(X,MAT_SHARE_NONZERO_PATTERN,&pch2opus->wnsmat[2]);CHKERRQ(ierr); ierr = MatDuplicate(Y,MAT_SHARE_NONZERO_PATTERN,&pch2opus->wnsmat[3]);CHKERRQ(ierr); } ierr = MatCopy(X,pch2opus->wnsmat[0],SAME_NONZERO_PATTERN);CHKERRQ(ierr); ierr = MatCopy(X,pch2opus->wnsmat[3],SAME_NONZERO_PATTERN);CHKERRQ(ierr); if (t) { for (i=0;ihyperorder-1;i++) { ierr = MatTransposeMatMult(A,pch2opus->wnsmat[0],MAT_REUSE_MATRIX,PETSC_DEFAULT,&pch2opus->wnsmat[1]);CHKERRQ(ierr); ierr = PCApplyTransposeMat_H2OPUS(pc,pch2opus->wnsmat[1],pch2opus->wnsmat[2]);CHKERRQ(ierr); ierr = MatAXPY(pch2opus->wnsmat[0],-1.,pch2opus->wnsmat[2],SAME_NONZERO_PATTERN);CHKERRQ(ierr); ierr = MatAXPY(pch2opus->wnsmat[3],1.,pch2opus->wnsmat[0],SAME_NONZERO_PATTERN);CHKERRQ(ierr); } ierr = PCApplyTransposeMat_H2OPUS(pc,pch2opus->wnsmat[3],Y);CHKERRQ(ierr); } else { for (i=0;ihyperorder-1;i++) { ierr = PCApplyMat_H2OPUS(pc,pch2opus->wnsmat[0],pch2opus->wnsmat[1]);CHKERRQ(ierr); ierr = MatMatMult(A,pch2opus->wnsmat[1],MAT_REUSE_MATRIX,PETSC_DEFAULT,&pch2opus->wnsmat[2]);CHKERRQ(ierr); ierr = MatAXPY(pch2opus->wnsmat[0],-1.,pch2opus->wnsmat[2],SAME_NONZERO_PATTERN);CHKERRQ(ierr); ierr = MatAXPY(pch2opus->wnsmat[3],1.,pch2opus->wnsmat[0],SAME_NONZERO_PATTERN);CHKERRQ(ierr); } ierr = PCApplyMat_H2OPUS(pc,pch2opus->wnsmat[3],Y);CHKERRQ(ierr); } PetscFunctionReturn(0); } static PetscErrorCode MatMatMultNumeric_Hyper(Mat M, Mat X, Mat Y,void *ctx) { PetscErrorCode ierr; PetscFunctionBegin; ierr = MatMatMultKernel_Hyper(M,X,Y,PETSC_FALSE);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Basic Newton-Schultz sampler: (2 * I - M * A)*M */ static PetscErrorCode MatMultKernel_NS(Mat M, Vec x, Vec y, PetscBool t) { PC pc; Mat A; PC_H2OPUS *pch2opus; PetscErrorCode ierr; PetscFunctionBegin; ierr = MatShellGetContext(M,(void*)&pc);CHKERRQ(ierr); pch2opus = (PC_H2OPUS*)pc->data; A = pch2opus->A; ierr = MatCreateVecs(pch2opus->M,pch2opus->wns[0] ? NULL : &pch2opus->wns[0],pch2opus->wns[1] ? NULL : &pch2opus->wns[1]);CHKERRQ(ierr); ierr = VecBindToCPU(pch2opus->wns[0],pch2opus->boundtocpu);CHKERRQ(ierr); ierr = VecBindToCPU(pch2opus->wns[1],pch2opus->boundtocpu);CHKERRQ(ierr); if (t) { ierr = PCApplyTranspose_H2OPUS(pc,x,y);CHKERRQ(ierr); ierr = MatMultTranspose(A,y,pch2opus->wns[1]);CHKERRQ(ierr); ierr = PCApplyTranspose_H2OPUS(pc,pch2opus->wns[1],pch2opus->wns[0]);CHKERRQ(ierr); ierr = VecAXPBY(y,-1.,2.,pch2opus->wns[0]);CHKERRQ(ierr); } else { ierr = PCApply_H2OPUS(pc,x,y);CHKERRQ(ierr); ierr = MatMult(A,y,pch2opus->wns[0]);CHKERRQ(ierr); ierr = PCApply_H2OPUS(pc,pch2opus->wns[0],pch2opus->wns[1]);CHKERRQ(ierr); ierr = VecAXPBY(y,-1.,2.,pch2opus->wns[1]);CHKERRQ(ierr); } PetscFunctionReturn(0); } static PetscErrorCode MatMult_NS(Mat M, Vec x, Vec y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = MatMultKernel_NS(M,x,y,PETSC_FALSE);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode MatMultTranspose_NS(Mat M, Vec x, Vec y) { PetscErrorCode ierr; PetscFunctionBegin; ierr = MatMultKernel_NS(M,x,y,PETSC_TRUE);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Basic Newton-Schultz sampler: (2 * I - M * A)*M, MatMat version */ static PetscErrorCode MatMatMultKernel_NS(Mat M, Mat X, Mat Y, PetscBool t) { PC pc; Mat A; PC_H2OPUS *pch2opus; PetscErrorCode ierr; PetscFunctionBegin; ierr = MatShellGetContext(M,(void*)&pc);CHKERRQ(ierr); pch2opus = (PC_H2OPUS*)pc->data; A = pch2opus->A; if (pch2opus->wnsmat[0] && pch2opus->wnsmat[0]->cmap->N != X->cmap->N) { ierr = MatDestroy(&pch2opus->wnsmat[0]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[1]);CHKERRQ(ierr); } if (!pch2opus->wnsmat[0]) { ierr = MatDuplicate(X,MAT_SHARE_NONZERO_PATTERN,&pch2opus->wnsmat[0]);CHKERRQ(ierr); ierr = MatDuplicate(Y,MAT_SHARE_NONZERO_PATTERN,&pch2opus->wnsmat[1]);CHKERRQ(ierr); } if (t) { ierr = PCApplyTransposeMat_H2OPUS(pc,X,Y);CHKERRQ(ierr); ierr = MatTransposeMatMult(A,Y,MAT_REUSE_MATRIX,PETSC_DEFAULT,&pch2opus->wnsmat[1]);CHKERRQ(ierr); ierr = PCApplyTransposeMat_H2OPUS(pc,pch2opus->wnsmat[1],pch2opus->wnsmat[0]);CHKERRQ(ierr); ierr = MatScale(Y,2.);CHKERRQ(ierr); ierr = MatAXPY(Y,-1.,pch2opus->wnsmat[0],SAME_NONZERO_PATTERN);CHKERRQ(ierr); } else { ierr = PCApplyMat_H2OPUS(pc,X,Y);CHKERRQ(ierr); ierr = MatMatMult(A,Y,MAT_REUSE_MATRIX,PETSC_DEFAULT,&pch2opus->wnsmat[0]);CHKERRQ(ierr); ierr = PCApplyMat_H2OPUS(pc,pch2opus->wnsmat[0],pch2opus->wnsmat[1]);CHKERRQ(ierr); ierr = MatScale(Y,2.);CHKERRQ(ierr); ierr = MatAXPY(Y,-1.,pch2opus->wnsmat[1],SAME_NONZERO_PATTERN);CHKERRQ(ierr); } PetscFunctionReturn(0); } static PetscErrorCode MatMatMultNumeric_NS(Mat M, Mat X, Mat Y, void *ctx) { PetscErrorCode ierr; PetscFunctionBegin; ierr = MatMatMultKernel_NS(M,X,Y,PETSC_FALSE);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCH2OpusSetUpSampler_Private(PC pc) { PC_H2OPUS *pch2opus = (PC_H2OPUS*)pc->data; Mat A = pc->useAmat ? pc->mat : pc->pmat; PetscErrorCode ierr; PetscFunctionBegin; if (!pch2opus->S) { PetscInt M,N,m,n; ierr = MatGetSize(A,&M,&N);CHKERRQ(ierr); ierr = MatGetLocalSize(A,&m,&n);CHKERRQ(ierr); ierr = MatCreateShell(PetscObjectComm((PetscObject)A),m,n,M,N,pc,&pch2opus->S);CHKERRQ(ierr); ierr = MatSetBlockSizesFromMats(pch2opus->S,A,A);CHKERRQ(ierr); #if defined(PETSC_H2OPUS_USE_GPU) ierr = MatShellSetVecType(pch2opus->S,VECCUDA);CHKERRQ(ierr); #endif } if (pch2opus->hyperorder >= 2) { ierr = MatShellSetOperation(pch2opus->S,MATOP_MULT,(void (*)(void))MatMult_Hyper);CHKERRQ(ierr); ierr = MatShellSetOperation(pch2opus->S,MATOP_MULT_TRANSPOSE,(void (*)(void))MatMultTranspose_Hyper);CHKERRQ(ierr); ierr = MatShellSetMatProductOperation(pch2opus->S,MATPRODUCT_AB,NULL,MatMatMultNumeric_Hyper,NULL,MATDENSE,MATDENSE);CHKERRQ(ierr); ierr = MatShellSetMatProductOperation(pch2opus->S,MATPRODUCT_AB,NULL,MatMatMultNumeric_Hyper,NULL,MATDENSECUDA,MATDENSECUDA);CHKERRQ(ierr); } else { ierr = MatShellSetOperation(pch2opus->S,MATOP_MULT,(void (*)(void))MatMult_NS);CHKERRQ(ierr); ierr = MatShellSetOperation(pch2opus->S,MATOP_MULT_TRANSPOSE,(void (*)(void))MatMultTranspose_NS);CHKERRQ(ierr); ierr = MatShellSetMatProductOperation(pch2opus->S,MATPRODUCT_AB,NULL,MatMatMultNumeric_NS,NULL,MATDENSE,MATDENSE);CHKERRQ(ierr); ierr = MatShellSetMatProductOperation(pch2opus->S,MATPRODUCT_AB,NULL,MatMatMultNumeric_NS,NULL,MATDENSECUDA,MATDENSECUDA);CHKERRQ(ierr); } ierr = MatPropagateSymmetryOptions(A,pch2opus->S);CHKERRQ(ierr); ierr = MatBindToCPU(pch2opus->S,pch2opus->boundtocpu);CHKERRQ(ierr); /* XXX */ ierr = MatSetOption(pch2opus->S,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCSetUp_H2OPUS(PC pc) { PC_H2OPUS *pch2opus = (PC_H2OPUS*)pc->data; Mat A = pc->useAmat ? pc->mat : pc->pmat; NormType norm = pch2opus->normtype; PetscReal initerr = 0.0,err; PetscReal initerrMA = 0.0,errMA; PetscBool ish2opus; PetscErrorCode ierr; PetscFunctionBegin; if (!pch2opus->T) { PetscInt M,N,m,n; const char *prefix; ierr = PCGetOptionsPrefix(pc,&prefix);CHKERRQ(ierr); ierr = MatGetSize(A,&M,&N);CHKERRQ(ierr); ierr = MatGetLocalSize(A,&m,&n);CHKERRQ(ierr); ierr = MatCreateShell(PetscObjectComm((PetscObject)pc->pmat),m,n,M,N,pc,&pch2opus->T);CHKERRQ(ierr); ierr = MatSetBlockSizesFromMats(pch2opus->T,A,A);CHKERRQ(ierr); ierr = MatShellSetOperation(pch2opus->T,MATOP_MULT,(void (*)(void))MatMult_MAmI);CHKERRQ(ierr); ierr = MatShellSetOperation(pch2opus->T,MATOP_MULT_TRANSPOSE,(void (*)(void))MatMultTranspose_MAmI);CHKERRQ(ierr); ierr = MatShellSetOperation(pch2opus->T,MATOP_NORM,(void (*)(void))MatNorm_H2OPUS);CHKERRQ(ierr); #if defined(PETSC_H2OPUS_USE_GPU) ierr = MatShellSetVecType(pch2opus->T,VECCUDA);CHKERRQ(ierr); #endif ierr = PetscLogObjectParent((PetscObject)pc,(PetscObject)pch2opus->T);CHKERRQ(ierr); ierr = MatSetOptionsPrefix(pch2opus->T,prefix);CHKERRQ(ierr); ierr = MatAppendOptionsPrefix(pch2opus->T,"pc_h2opus_est_");CHKERRQ(ierr); } ierr = MatDestroy(&pch2opus->A);CHKERRQ(ierr); ierr = PetscObjectTypeCompare((PetscObject)A,MATH2OPUS,&ish2opus);CHKERRQ(ierr); if (ish2opus) { ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); pch2opus->A = A; } else { const char *prefix; ierr = MatCreateH2OpusFromMat(A,pch2opus->sdim,pch2opus->coords,PETSC_FALSE,pch2opus->eta,pch2opus->leafsize,pch2opus->max_rank,pch2opus->bs,pch2opus->mrtol,&pch2opus->A);CHKERRQ(ierr); /* XXX */ ierr = MatSetOption(pch2opus->A,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); ierr = PCGetOptionsPrefix(pc,&prefix);CHKERRQ(ierr); ierr = MatSetOptionsPrefix(pch2opus->A,prefix);CHKERRQ(ierr); ierr = MatAppendOptionsPrefix(pch2opus->A,"pc_h2opus_init_");CHKERRQ(ierr); ierr = MatSetFromOptions(pch2opus->A);CHKERRQ(ierr); ierr = MatAssemblyBegin(pch2opus->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(pch2opus->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); /* XXX */ ierr = MatSetOption(pch2opus->A,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); } #if defined(PETSC_H2OPUS_USE_GPU) pch2opus->boundtocpu = pch2opus->A->boundtocpu; #endif ierr = MatBindToCPU(pch2opus->T,pch2opus->boundtocpu);CHKERRQ(ierr); if (pch2opus->M) { /* see if we can reuse M as initial guess */ PetscReal reuse; ierr = MatBindToCPU(pch2opus->M,pch2opus->boundtocpu);CHKERRQ(ierr); ierr = MatNorm(pch2opus->T,norm,&reuse);CHKERRQ(ierr); if (reuse >= 1.0) { ierr = MatDestroy(&pch2opus->M);CHKERRQ(ierr); } } if (!pch2opus->M) { const char *prefix; ierr = MatDuplicate(pch2opus->A,MAT_COPY_VALUES,&pch2opus->M);CHKERRQ(ierr); ierr = PCGetOptionsPrefix(pc,&prefix);CHKERRQ(ierr); ierr = MatSetOptionsPrefix(pch2opus->M,prefix);CHKERRQ(ierr); ierr = MatAppendOptionsPrefix(pch2opus->M,"pc_h2opus_inv_");CHKERRQ(ierr); ierr = MatSetFromOptions(pch2opus->M);CHKERRQ(ierr); ierr = PCH2OpusSetUpInit(pc);CHKERRQ(ierr); ierr = MatScale(pch2opus->M,pch2opus->s0);CHKERRQ(ierr); } /* A and M have the same h2 matrix structure, save on reordering routines */ ierr = MatH2OpusSetNativeMult(pch2opus->A,PETSC_TRUE);CHKERRQ(ierr); ierr = MatH2OpusSetNativeMult(pch2opus->M,PETSC_TRUE);CHKERRQ(ierr); if (norm == NORM_1 || norm == NORM_2 || norm == NORM_INFINITY) { ierr = MatNorm(pch2opus->T,norm,&initerr);CHKERRQ(ierr); pch2opus->testMA = PETSC_TRUE; ierr = MatNorm(pch2opus->T,norm,&initerrMA);CHKERRQ(ierr); pch2opus->testMA = PETSC_FALSE; } if (PetscIsInfOrNanReal(initerr)) pc->failedreason = PC_SETUP_ERROR; err = initerr; errMA = initerrMA; if (pch2opus->monitor) { ierr = PetscPrintf(PetscObjectComm((PetscObject)pc),"%D: ||M*A - I|| NORM%s abs %g rel %g\n",0,NormTypes[norm],(double)err,(double)(err/initerr));CHKERRQ(ierr); ierr = PetscPrintf(PetscObjectComm((PetscObject)pc),"%D: ||M*A|| NORM%s abs %g rel %g\n",0,NormTypes[norm],(double)errMA,(double)(errMA/initerrMA));CHKERRQ(ierr); } if (initerr > pch2opus->atol && !pc->failedreason) { PetscInt i; ierr = PCH2OpusSetUpSampler_Private(pc);CHKERRQ(ierr); for (i = 0; i < pch2opus->maxits; i++) { Mat M; const char* prefix; ierr = MatDuplicate(pch2opus->M,MAT_SHARE_NONZERO_PATTERN,&M);CHKERRQ(ierr); ierr = MatGetOptionsPrefix(pch2opus->M,&prefix);CHKERRQ(ierr); ierr = MatSetOptionsPrefix(M,prefix);CHKERRQ(ierr); ierr = MatH2OpusSetSamplingMat(M,pch2opus->S,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); ierr = MatSetFromOptions(M);CHKERRQ(ierr); ierr = MatH2OpusSetNativeMult(M,PETSC_TRUE);CHKERRQ(ierr); ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->M);CHKERRQ(ierr); pch2opus->M = M; if (norm == NORM_1 || norm == NORM_2 || norm == NORM_INFINITY) { ierr = MatNorm(pch2opus->T,norm,&err);CHKERRQ(ierr); pch2opus->testMA = PETSC_TRUE; ierr = MatNorm(pch2opus->T,norm,&errMA);CHKERRQ(ierr); pch2opus->testMA = PETSC_FALSE; } if (pch2opus->monitor) { ierr = PetscPrintf(PetscObjectComm((PetscObject)pc),"%D: ||M*A - I|| NORM%s abs %g rel %g\n",i+1,NormTypes[norm],(double)err,(double)(err/initerr));CHKERRQ(ierr); ierr = PetscPrintf(PetscObjectComm((PetscObject)pc),"%D: ||M*A|| NORM%s abs %g rel %g\n",i+1,NormTypes[norm],(double)errMA,(double)(errMA/initerrMA));CHKERRQ(ierr); } if (PetscIsInfOrNanReal(err)) pc->failedreason = PC_SETUP_ERROR; if (err < pch2opus->atol || err < pch2opus->rtol*initerr || pc->failedreason) break; } } /* cleanup setup workspace */ ierr = MatH2OpusSetNativeMult(pch2opus->A,PETSC_FALSE);CHKERRQ(ierr); ierr = MatH2OpusSetNativeMult(pch2opus->M,PETSC_FALSE);CHKERRQ(ierr); ierr = VecDestroy(&pch2opus->wns[0]);CHKERRQ(ierr); ierr = VecDestroy(&pch2opus->wns[1]);CHKERRQ(ierr); ierr = VecDestroy(&pch2opus->wns[2]);CHKERRQ(ierr); ierr = VecDestroy(&pch2opus->wns[3]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[0]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[1]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[2]);CHKERRQ(ierr); ierr = MatDestroy(&pch2opus->wnsmat[3]);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PCView_H2OPUS(PC pc, PetscViewer viewer) { PetscErrorCode ierr; PC_H2OPUS *pch2opus = (PC_H2OPUS*)pc->data; PetscBool isascii; PetscFunctionBegin; ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr); if (isascii) { if (pch2opus->A && pch2opus->A != pc->mat && pch2opus->A != pc->pmat) { ierr = PetscViewerASCIIPrintf(viewer,"Initial approximation matrix\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_ASCII_INFO_DETAIL);CHKERRQ(ierr); ierr = MatView(pch2opus->A,viewer);CHKERRQ(ierr); ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); } if (pch2opus->M) { ierr = PetscViewerASCIIPrintf(viewer,"Inner matrix constructed\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_ASCII_INFO_DETAIL);CHKERRQ(ierr); ierr = MatView(pch2opus->M,viewer);CHKERRQ(ierr); ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); } ierr = PetscViewerASCIIPrintf(viewer,"Initial scaling: %g\n",pch2opus->s0);CHKERRQ(ierr); } PetscFunctionReturn(0); } PETSC_EXTERN PetscErrorCode PCCreate_H2OPUS(PC pc) { PetscErrorCode ierr; PC_H2OPUS *pch2opus; PetscFunctionBegin; ierr = PetscNewLog(pc,&pch2opus);CHKERRQ(ierr); pc->data = (void*)pch2opus; pch2opus->atol = 1.e-2; pch2opus->rtol = 1.e-6; pch2opus->maxits = 50; pch2opus->hyperorder = 1; /* defaults to basic NewtonSchultz */ pch2opus->normtype = NORM_2; /* these are needed when we are sampling the pmat */ pch2opus->eta = PETSC_DECIDE; pch2opus->leafsize = PETSC_DECIDE; pch2opus->max_rank = PETSC_DECIDE; pch2opus->bs = PETSC_DECIDE; pch2opus->mrtol = PETSC_DECIDE; #if defined(PETSC_H2OPUS_USE_GPU) pch2opus->boundtocpu = PETSC_FALSE; #else pch2opus->boundtocpu = PETSC_TRUE; #endif pc->ops->destroy = PCDestroy_H2OPUS; pc->ops->setup = PCSetUp_H2OPUS; pc->ops->apply = PCApply_H2OPUS; pc->ops->matapply = PCApplyMat_H2OPUS; pc->ops->applytranspose = PCApplyTranspose_H2OPUS; pc->ops->reset = PCReset_H2OPUS; pc->ops->setfromoptions = PCSetFromOptions_H2OPUS; pc->ops->view = PCView_H2OPUS; ierr = PetscObjectComposeFunction((PetscObject)pc,"PCSetCoordinates_C",PCSetCoordinates_H2OPUS);CHKERRQ(ierr); PetscFunctionReturn(0); }