/*$Id: matmatmult.c,v 1.15 2001/09/07 20:04:44 buschelm Exp $*/ /* Defines matrix-matrix product routines for pairs of SeqAIJ matrices C = A * B */ #include "src/mat/impls/aij/seq/aij.h" /*I "petscmat.h" I*/ #include "src/mat/utils/freespace.h" static int logkey_matmatmult = 0; static int logkey_matmatmult_symbolic = 0; static int logkey_matmatmult_numeric = 0; #undef __FUNCT__ #define __FUNCT__ "MatMatMult" /*@ MatMatMult - Performs Matrix-Matrix Multiplication C=A*B. Collective on Mat Input Parameters: + A - the left matrix - B - the right matrix Output Parameters: . C - the product matrix Notes: C will be created and must be destroyed by the user with MatDestroy(). This routine is currently only implemented for pairs of SeqAIJ matrices. Level: intermediate .seealso: MatMatMultSymbolic(),MatMatMultNumeric() @*/ int MatMatMult(Mat A,Mat B, Mat *C) { /* Perhaps this "interface" routine should be moved into the interface directory.*/ /* To facilitate implementations with varying types, QueryFunction is used.*/ /* It is assumed that implementations will be composed as "MatMatMult_". */ int ierr; char funct[80]; int (*mult)(Mat,Mat,Mat*); PetscFunctionBegin; PetscValidPointer(C); PetscValidHeaderSpecific(A,MAT_COOKIE); PetscValidType(A); MatPreallocated(A); if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); PetscValidHeaderSpecific(B,MAT_COOKIE); PetscValidType(B); MatPreallocated(B); if (!B->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); if (B->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); if (B->M!=A->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->M,A->N); ierr = PetscStrcpy(funct,"MatMatMult_");CHKERRQ(ierr); ierr = PetscStrcat(funct,A->type_name);CHKERRQ(ierr); ierr = PetscStrcat(funct,B->type_name);CHKERRQ(ierr); ierr = PetscObjectQueryFunction((PetscObject)A,funct,(PetscVoidFunction)&mult);CHKERRQ(ierr); if (!mult) SETERRQ2(PETSC_ERR_SUP, "C=A*B not implemented for A of type %s and B of type %s", A->type_name,B->type_name); ierr = (*mult)(A,B,C);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMatMult_SeqAIJ_SeqAIJ" int MatMatMult_SeqAIJ_SeqAIJ(Mat A,Mat B, Mat *C) { int ierr; char symfunct[80],numfunct[80],types[80]; int (*symbolic)(Mat,Mat,Mat*),(*numeric)(Mat,Mat,Mat); PetscFunctionBegin; ierr = PetscStrcpy(types,A->type_name);CHKERRQ(ierr); ierr = PetscStrcat(types,B->type_name);CHKERRQ(ierr); ierr = PetscStrcpy(symfunct,"MatMatMultSymbolic_");CHKERRQ(ierr); ierr = PetscStrcat(symfunct,types);CHKERRQ(ierr); ierr = PetscObjectQueryFunction((PetscObject)A,symfunct,(PetscVoidFunction)&symbolic);CHKERRQ(ierr); if (!symbolic) SETERRQ2(PETSC_ERR_SUP, "C=A*B not implemented for A of type %s and B of type %s", A->type_name,B->type_name); ierr = PetscStrcpy(numfunct,"MatMatMultNumeric_");CHKERRQ(ierr); ierr = PetscStrcat(numfunct,types);CHKERRQ(ierr); ierr = PetscObjectQueryFunction((PetscObject)A,numfunct,(PetscVoidFunction)&numeric);CHKERRQ(ierr); if (!numeric) SETERRQ2(PETSC_ERR_SUP, "C=A*B not implemented for A of type %s and B of type %s", A->type_name,B->type_name); ierr = PetscLogEventBegin(logkey_matmatmult,A,B,0,0);CHKERRQ(ierr); ierr = (*symbolic)(A,B,C);CHKERRQ(ierr); ierr = (*numeric)(A,B,*C);CHKERRQ(ierr); ierr = PetscLogEventEnd(logkey_matmatmult,A,B,0,0);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMatMultSymbolic" /*@ MatMatMultSymbolic - Performs construction, preallocation, and computes the ij structure of the matrix-matrix product C=A*B. Call this routine before calling MatMatMultNumeric(). Collective on Mat Input Parameters: + A - the left matrix - B - the right matrix Output Parameters: . C - the matrix containing the ij structure of product matrix Notes: C will be created and must be destroyed by the user with MatDestroy(). This routine is currently only implemented for SeqAIJ type matrices. Level: intermediate .seealso: MatMatMult(),MatMatMultNumeric() @*/ int MatMatMultSymbolic(Mat A,Mat B,Mat *C) { /* Perhaps this "interface" routine should be moved into the interface directory.*/ /* To facilitate implementations with varying types, QueryFunction is used.*/ /* It is assumed that implementations will be composed as "MatMatMultSymbolic_". */ int ierr; char funct[80]; int (*symbolic)(Mat,Mat,Mat *); PetscFunctionBegin; PetscValidPointer(C); PetscValidHeaderSpecific(A,MAT_COOKIE); PetscValidType(A); MatPreallocated(A); if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); PetscValidHeaderSpecific(B,MAT_COOKIE); PetscValidType(B); MatPreallocated(B); if (!B->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); if (B->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); if (B->M!=A->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->M,A->N); ierr = PetscStrcpy(funct,"MatMatMultSymbolic_");CHKERRQ(ierr); ierr = PetscStrcat(funct,A->type_name);CHKERRQ(ierr); ierr = PetscStrcat(funct,B->type_name);CHKERRQ(ierr); ierr = PetscObjectQueryFunction((PetscObject)A,funct,(PetscVoidFunction)&symbolic);CHKERRQ(ierr); if (!symbolic) SETERRQ2(PETSC_ERR_SUP, "C=A*B not implemented for A of type %s and B of type %s", A->type_name,B->type_name); ierr = (*symbolic)(A,B,C);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMatMult_Symbolic_SeqAIJ_SeqAIJ" int MatMatMult_Symbolic_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat *C) { int ierr; FreeSpaceList free_space=PETSC_NULL,current_space=PETSC_NULL; Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c; int *ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj; int *ci,*cj,*lnk,idx0,idx,bcol; int am=A->M,bn=B->N,bm=B->M; int i,j,k,anzi,brow,bnzj,cnzi; MatScalar *ca; PetscFunctionBegin; /* Start timers */ ierr = PetscLogEventBegin(logkey_matmatmult_symbolic,A,B,0,0);CHKERRQ(ierr); /* Set up */ /* Allocate ci array, arrays for fill computation and */ /* free space for accumulating nonzero column info */ ierr = PetscMalloc(((am+1)+1)*sizeof(int),&ci);CHKERRQ(ierr); ci[0] = 0; ierr = PetscMalloc((bn+1)*sizeof(int),&lnk);CHKERRQ(ierr); for (i=0; i0) idx = bjj[k-1]; do { idx0 = idx; idx = lnk[idx0]; } while (bcol > idx); lnk[idx0] = bcol; lnk[bcol] = idx; cnzi++; } } } /* If free space is not available, make more free space */ /* Double the amount of total space in the list */ if (current_space->local_remainingtotal_array_size,¤t_space);CHKERRQ(ierr); } /* Copy data into free space, and zero out denserow and lnk */ idx = bn; for (j=0; jarray++ = idx; lnk[idx0] = -1; } lnk[idx] = -1; current_space->local_used += cnzi; current_space->local_remaining -= cnzi; ci[i+1] = ci[i] + cnzi; } /* Column indices are in the list of free space */ /* Allocate space for cj, initialize cj, and */ /* destroy list of free space and other temporary array(s) */ ierr = PetscMalloc((ci[am]+1)*sizeof(int),&cj);CHKERRQ(ierr); ierr = MakeSpaceContiguous(&free_space,cj);CHKERRQ(ierr); ierr = PetscFree(lnk);CHKERRQ(ierr); /* Allocate space for ca */ ierr = PetscMalloc((ci[am]+1)*sizeof(MatScalar),&ca);CHKERRQ(ierr); ierr = PetscMemzero(ca,(ci[am]+1)*sizeof(MatScalar));CHKERRQ(ierr); /* put together the new matrix */ ierr = MatCreateSeqAIJWithArrays(A->comm,am,bn,ci,cj,ca,C);CHKERRQ(ierr); /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ c = (Mat_SeqAIJ *)((*C)->data); c->freedata = PETSC_TRUE; c->nonew = 0; ierr = PetscLogEventEnd(logkey_matmatmult_symbolic,A,B,0,0);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMatMultNumeric" /*@ MatMatMultNumeric - Performs the numeric matrix-matrix product. Call this routine after first calling MatMatMultSymbolic(). Collective on Mat Input Parameters: + A - the left matrix - B - the right matrix Output Parameters: . C - the product matrix, whose ij structure was defined from MatMatMultSymbolic(). Notes: C must have been created with MatMatMultSymbolic. This routine is currently only implemented for SeqAIJ type matrices. Level: intermediate .seealso: MatMatMult(),MatMatMultSymbolic() @*/ int MatMatMultNumeric(Mat A,Mat B,Mat C){ /* Perhaps this "interface" routine should be moved into the interface directory.*/ /* To facilitate implementations with varying types, QueryFunction is used.*/ /* It is assumed that implementations will be composed as "MatMatMultNumeric_". */ int ierr; char funct[80]; int (*numeric)(Mat,Mat,Mat); PetscFunctionBegin; PetscValidHeaderSpecific(A,MAT_COOKIE); PetscValidType(A); MatPreallocated(A); if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); PetscValidHeaderSpecific(B,MAT_COOKIE); PetscValidType(B); MatPreallocated(B); if (!B->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); if (B->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); PetscValidHeaderSpecific(C,MAT_COOKIE); PetscValidType(C); MatPreallocated(C); if (!C->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); if (C->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); if (B->N!=C->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->N,C->N); if (B->M!=A->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->M,A->N); if (A->M!=C->M) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",A->M,C->M); /* Query A for ApplyPtAP implementation based on types of P */ ierr = PetscStrcpy(funct,"MatMatMultNumeric_");CHKERRQ(ierr); ierr = PetscStrcat(funct,A->type_name);CHKERRQ(ierr); ierr = PetscStrcat(funct,B->type_name);CHKERRQ(ierr); ierr = PetscObjectQueryFunction((PetscObject)A,funct,(PetscVoidFunction)&numeric);CHKERRQ(ierr); if (!numeric) SETERRQ2(PETSC_ERR_SUP, "C=A*B not implemented for A of type %s and B of type %s", A->type_name,B->type_name); ierr = (*numeric)(A,B,C);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMatMult_Numeric_SeqAIJ_SeqAIJ" int MatMatMult_Numeric_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat C) { int ierr,flops=0; Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data; int *ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj,*ci=c->i,*cj=c->j; int am=A->M,cn=C->N; int i,j,k,anzi,bnzi,cnzi,brow; MatScalar *aa=a->a,*ba=b->a,*baj,*ca=c->a,*temp; PetscFunctionBegin; /* Start timers */ ierr = PetscLogEventBegin(logkey_matmatmult_numeric,A,B,C,0);CHKERRQ(ierr); /* Allocate temp accumulation space to avoid searching for nonzero columns in C */ ierr = PetscMalloc((cn+1)*sizeof(MatScalar),&temp);CHKERRQ(ierr); ierr = PetscMemzero(temp,cn*sizeof(MatScalar));CHKERRQ(ierr); /* Traverse A row-wise. */ /* Build the ith row in C by summing over nonzero columns in A, */ /* the rows of B corresponding to nonzeros of A. */ for (i=0;i