#include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ #include <../src/mat/impls/sbaij/seq/sbaij.h> #include <../src/mat/impls/dense/seq/dense.h> #if defined(PETSC_HAVE_MKL_INTEL_ILP64) #define MKL_ILP64 #endif #include PETSC_EXTERN void PetscSetMKL_PARDISOThreads(int); /* * Possible mkl_pardiso phases that controls the execution of the solver. * For more information check mkl_pardiso manual. */ #define JOB_ANALYSIS 11 #define JOB_ANALYSIS_NUMERICAL_FACTORIZATION 12 #define JOB_ANALYSIS_NUMERICAL_FACTORIZATION_SOLVE_ITERATIVE_REFINEMENT 13 #define JOB_NUMERICAL_FACTORIZATION 22 #define JOB_NUMERICAL_FACTORIZATION_SOLVE_ITERATIVE_REFINEMENT 23 #define JOB_SOLVE_ITERATIVE_REFINEMENT 33 #define JOB_SOLVE_FORWARD_SUBSTITUTION 331 #define JOB_SOLVE_DIAGONAL_SUBSTITUTION 332 #define JOB_SOLVE_BACKWARD_SUBSTITUTION 333 #define JOB_RELEASE_OF_LU_MEMORY 0 #define JOB_RELEASE_OF_ALL_MEMORY -1 #define IPARM_SIZE 64 #if defined(PETSC_USE_64BIT_INDICES) #if defined(PETSC_HAVE_MKL_INTEL_ILP64) #define INT_TYPE long long int #define MKL_PARDISO pardiso #define MKL_PARDISO_INIT pardisoinit #else /* this is the case where the MKL BLAS/LAPACK are 32-bit integers but the 64-bit integer version of of PARDISO code is used; hence the need for the 64 below*/ #define INT_TYPE long long int #define MKL_PARDISO pardiso_64 #define MKL_PARDISO_INIT pardiso_64init void pardiso_64init(void *pt, INT_TYPE *mtype, INT_TYPE iparm[]) { PetscBLASInt iparm_copy[IPARM_SIZE], mtype_copy; PetscCallVoid(PetscBLASIntCast(*mtype, &mtype_copy)); pardisoinit(pt, &mtype_copy, iparm_copy); for (PetscInt i = 0; i < IPARM_SIZE; i++) iparm[i] = iparm_copy[i]; } #endif #else #define INT_TYPE int #define MKL_PARDISO pardiso #define MKL_PARDISO_INIT pardisoinit #endif #define PetscCallPardiso(f) PetscStackCallExternalVoid("MKL_PARDISO", f); /* Internal data structure. */ typedef struct { /* Configuration vector*/ INT_TYPE iparm[IPARM_SIZE]; /* Internal MKL PARDISO memory location. After the first call to MKL PARDISO do not modify pt, as that could cause a serious memory leak. */ void *pt[IPARM_SIZE]; /* Basic MKL PARDISO info */ INT_TYPE phase, maxfct, mnum, mtype, n, nrhs, msglvl, err; /* Matrix nonzero structure and values */ void *a; INT_TYPE *ia, *ja; /* Number of non-zero elements */ INT_TYPE nz; /* Row permutaton vector */ INT_TYPE *perm; /* Define if matrix preserves sparse structure. */ MatStructure matstruc; PetscBool needsym; PetscBool freeaij; /* Schur complement */ PetscScalar *schur; PetscInt schur_size; PetscInt *schur_idxs; PetscScalar *schur_work; PetscBLASInt schur_work_size; PetscBool solve_interior; /* True if MKL PARDISO function have been used. */ PetscBool CleanUp; /* Conversion to a format suitable for MKL */ PetscErrorCode (*Convert)(Mat, PetscBool, MatReuse, PetscBool *, INT_TYPE *, INT_TYPE **, INT_TYPE **, PetscScalar **); } Mat_MKL_PARDISO; static PetscErrorCode MatMKLPardiso_Convert_seqsbaij(Mat A, PetscBool sym, MatReuse reuse, PetscBool *free, INT_TYPE *nnz, INT_TYPE **r, INT_TYPE **c, PetscScalar **v) { Mat_SeqSBAIJ *aa = (Mat_SeqSBAIJ *)A->data; PetscInt bs = A->rmap->bs, i; PetscFunctionBegin; PetscCheck(sym, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "This should not happen"); *v = aa->a; if (bs == 1) { /* already in the correct format */ /* though PetscInt and INT_TYPE are of the same size since they are defined differently the Intel compiler requires a cast */ *r = (INT_TYPE *)aa->i; *c = (INT_TYPE *)aa->j; *nnz = (INT_TYPE)aa->nz; *free = PETSC_FALSE; } else if (reuse == MAT_INITIAL_MATRIX) { PetscInt m = A->rmap->n, nz = aa->nz; PetscInt *row, *col; PetscCall(PetscMalloc2(m + 1, &row, nz, &col)); for (i = 0; i < m + 1; i++) row[i] = aa->i[i] + 1; for (i = 0; i < nz; i++) col[i] = aa->j[i] + 1; *r = (INT_TYPE *)row; *c = (INT_TYPE *)col; *nnz = (INT_TYPE)nz; *free = PETSC_TRUE; } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatMKLPardiso_Convert_seqbaij(Mat A, PetscBool sym, MatReuse reuse, PetscBool *free, INT_TYPE *nnz, INT_TYPE **r, INT_TYPE **c, PetscScalar **v) { Mat_SeqBAIJ *aa = (Mat_SeqBAIJ *)A->data; PetscInt bs = A->rmap->bs, i; PetscFunctionBegin; if (!sym) { *v = aa->a; if (bs == 1) { /* already in the correct format */ /* though PetscInt and INT_TYPE are of the same size since they are defined differently the Intel compiler requires a cast */ *r = (INT_TYPE *)aa->i; *c = (INT_TYPE *)aa->j; *nnz = (INT_TYPE)aa->nz; *free = PETSC_FALSE; PetscFunctionReturn(PETSC_SUCCESS); } else if (reuse == MAT_INITIAL_MATRIX) { PetscInt m = A->rmap->n, nz = aa->nz; PetscInt *row, *col; PetscCall(PetscMalloc2(m + 1, &row, nz, &col)); for (i = 0; i < m + 1; i++) row[i] = aa->i[i] + 1; for (i = 0; i < nz; i++) col[i] = aa->j[i] + 1; *r = (INT_TYPE *)row; *c = (INT_TYPE *)col; *nnz = (INT_TYPE)nz; } *free = PETSC_TRUE; } else { SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "This should not happen"); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatMKLPardiso_Convert_seqaij(Mat A, PetscBool sym, MatReuse reuse, PetscBool *free, INT_TYPE *nnz, INT_TYPE **r, INT_TYPE **c, PetscScalar **v) { Mat_SeqAIJ *aa = (Mat_SeqAIJ *)A->data; PetscScalar *aav; PetscFunctionBegin; PetscCall(MatSeqAIJGetArrayRead(A, (const PetscScalar **)&aav)); if (!sym) { /* already in the correct format */ *v = aav; *r = (INT_TYPE *)aa->i; *c = (INT_TYPE *)aa->j; *nnz = (INT_TYPE)aa->nz; *free = PETSC_FALSE; } else if (reuse == MAT_INITIAL_MATRIX) { /* need to get the triangular part */ PetscScalar *vals, *vv; PetscInt *row, *col, *jj; PetscInt m = A->rmap->n, nz, i; const PetscInt *adiag; PetscCall(MatGetDiagonalMarkers_SeqAIJ(A, &adiag, NULL)); nz = 0; for (i = 0; i < m; i++) nz += aa->i[i + 1] - adiag[i]; PetscCall(PetscMalloc2(m + 1, &row, nz, &col)); PetscCall(PetscMalloc1(nz, &vals)); jj = col; vv = vals; row[0] = 0; for (i = 0; i < m; i++) { PetscInt *aj = aa->j + adiag[i]; PetscScalar *av = aav + adiag[i]; PetscInt rl = aa->i[i + 1] - adiag[i], j; for (j = 0; j < rl; j++) { *jj = *aj; jj++; aj++; *vv = *av; vv++; av++; } row[i + 1] = row[i] + rl; } *v = vals; *r = (INT_TYPE *)row; *c = (INT_TYPE *)col; *nnz = (INT_TYPE)nz; *free = PETSC_TRUE; } else { PetscScalar *vv; PetscInt m = A->rmap->n, i; const PetscInt *adiag; PetscCall(MatGetDiagonalMarkers_SeqAIJ(A, &adiag, NULL)); vv = *v; for (i = 0; i < m; i++) { PetscScalar *av = aav + adiag[i]; PetscInt rl = aa->i[i + 1] - adiag[i], j; for (j = 0; j < rl; j++) { *vv = *av; vv++; av++; } } *free = PETSC_TRUE; } PetscCall(MatSeqAIJRestoreArrayRead(A, (const PetscScalar **)&aav)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatMKLPardisoSolveSchur_Private(Mat F, PetscScalar *B, PetscScalar *X) { Mat_MKL_PARDISO *mpardiso = (Mat_MKL_PARDISO *)F->data; Mat S, Xmat, Bmat; MatFactorSchurStatus schurstatus; PetscFunctionBegin; PetscCall(MatFactorGetSchurComplement(F, &S, &schurstatus)); PetscCheck(X != B || schurstatus != MAT_FACTOR_SCHUR_INVERTED, PETSC_COMM_SELF, PETSC_ERR_SUP, "X and B cannot point to the same address"); PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, mpardiso->schur_size, mpardiso->nrhs, B, &Bmat)); PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, mpardiso->schur_size, mpardiso->nrhs, X, &Xmat)); PetscCall(MatSetType(Bmat, ((PetscObject)S)->type_name)); PetscCall(MatSetType(Xmat, ((PetscObject)S)->type_name)); #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) PetscCall(MatBindToCPU(Xmat, S->boundtocpu)); PetscCall(MatBindToCPU(Bmat, S->boundtocpu)); #endif #if defined(PETSC_USE_COMPLEX) PetscCheck(mpardiso->iparm[12 - 1] != 1, PetscObjectComm((PetscObject)F), PETSC_ERR_SUP, "Hermitian solve not implemented yet"); #endif switch (schurstatus) { case MAT_FACTOR_SCHUR_FACTORED: if (!mpardiso->iparm[12 - 1]) { PetscCall(MatMatSolve(S, Bmat, Xmat)); } else { /* transpose solve */ PetscCall(MatMatSolveTranspose(S, Bmat, Xmat)); } break; case MAT_FACTOR_SCHUR_INVERTED: PetscCall(MatProductCreateWithMat(S, Bmat, NULL, Xmat)); if (!mpardiso->iparm[12 - 1]) { PetscCall(MatProductSetType(Xmat, MATPRODUCT_AB)); } else { /* transpose solve */ PetscCall(MatProductSetType(Xmat, MATPRODUCT_AtB)); } PetscCall(MatProductSetFromOptions(Xmat)); PetscCall(MatProductSymbolic(Xmat)); PetscCall(MatProductNumeric(Xmat)); PetscCall(MatProductClear(Xmat)); break; default: SETERRQ(PetscObjectComm((PetscObject)F), PETSC_ERR_SUP, "Unhandled MatFactorSchurStatus %d", (int)F->schur_status); break; } PetscCall(MatFactorRestoreSchurComplement(F, &S, schurstatus)); PetscCall(MatDestroy(&Bmat)); PetscCall(MatDestroy(&Xmat)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatFactorSetSchurIS_MKL_PARDISO(Mat F, IS is) { Mat_MKL_PARDISO *mpardiso = (Mat_MKL_PARDISO *)F->data; const PetscScalar *arr; const PetscInt *idxs; PetscInt size, i; PetscMPIInt csize; PetscBool sorted; PetscFunctionBegin; PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)F), &csize)); PetscCheck(csize <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "MKL PARDISO parallel Schur complements not yet supported from PETSc"); PetscCall(ISSorted(is, &sorted)); PetscCheck(sorted, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS for MKL PARDISO Schur complements needs to be sorted"); PetscCall(ISGetLocalSize(is, &size)); PetscCall(PetscFree(mpardiso->schur_work)); PetscCall(PetscBLASIntCast(PetscMax(mpardiso->n, 2 * size), &mpardiso->schur_work_size)); PetscCall(PetscMalloc1(mpardiso->schur_work_size, &mpardiso->schur_work)); PetscCall(MatDestroy(&F->schur)); PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, size, size, NULL, &F->schur)); PetscCall(MatDenseGetArrayRead(F->schur, &arr)); mpardiso->schur = (PetscScalar *)arr; mpardiso->schur_size = size; PetscCall(MatDenseRestoreArrayRead(F->schur, &arr)); if (mpardiso->mtype == 2) PetscCall(MatSetOption(F->schur, MAT_SPD, PETSC_TRUE)); PetscCall(PetscFree(mpardiso->schur_idxs)); PetscCall(PetscMalloc1(size, &mpardiso->schur_idxs)); PetscCall(PetscArrayzero(mpardiso->perm, mpardiso->n)); PetscCall(ISGetIndices(is, &idxs)); PetscCall(PetscArraycpy(mpardiso->schur_idxs, idxs, size)); for (i = 0; i < size; i++) mpardiso->perm[idxs[i]] = 1; PetscCall(ISRestoreIndices(is, &idxs)); if (size) { /* turn on Schur switch if the set of indices is not empty */ mpardiso->iparm[36 - 1] = 2; } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatDestroy_MKL_PARDISO(Mat A) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)A->data; PetscFunctionBegin; if (mat_mkl_pardiso->CleanUp) { mat_mkl_pardiso->phase = JOB_RELEASE_OF_ALL_MEMORY; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, NULL, NULL, NULL, NULL, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, NULL, NULL, &mat_mkl_pardiso->err)); } PetscCall(PetscFree(mat_mkl_pardiso->perm)); PetscCall(PetscFree(mat_mkl_pardiso->schur_work)); PetscCall(PetscFree(mat_mkl_pardiso->schur_idxs)); if (mat_mkl_pardiso->freeaij) { PetscCall(PetscFree2(mat_mkl_pardiso->ia, mat_mkl_pardiso->ja)); if (mat_mkl_pardiso->iparm[34] == 1) PetscCall(PetscFree(mat_mkl_pardiso->a)); } PetscCall(PetscFree(A->data)); /* clear composed functions */ PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorGetSolverType_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorSetSchurIS_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMkl_PardisoSetCntl_C", NULL)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatMKLPardisoScatterSchur_Private(Mat_MKL_PARDISO *mpardiso, PetscScalar *whole, PetscScalar *schur, PetscBool reduce) { PetscFunctionBegin; if (reduce) { /* data given for the whole matrix */ PetscInt i, m = 0, p = 0; for (i = 0; i < mpardiso->nrhs; i++) { PetscInt j; for (j = 0; j < mpardiso->schur_size; j++) schur[p + j] = whole[m + mpardiso->schur_idxs[j]]; m += mpardiso->n; p += mpardiso->schur_size; } } else { /* from Schur to whole */ PetscInt i, m = 0, p = 0; for (i = 0; i < mpardiso->nrhs; i++) { PetscInt j; for (j = 0; j < mpardiso->schur_size; j++) whole[m + mpardiso->schur_idxs[j]] = schur[p + j]; m += mpardiso->n; p += mpardiso->schur_size; } } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatSolve_MKL_PARDISO(Mat A, Vec b, Vec x) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)A->data; PetscScalar *xarray; const PetscScalar *barray; PetscFunctionBegin; mat_mkl_pardiso->nrhs = 1; PetscCall(VecGetArrayWrite(x, &xarray)); PetscCall(VecGetArrayRead(b, &barray)); if (!mat_mkl_pardiso->schur) mat_mkl_pardiso->phase = JOB_SOLVE_ITERATIVE_REFINEMENT; else mat_mkl_pardiso->phase = JOB_SOLVE_FORWARD_SUBSTITUTION; if (barray == xarray) { /* if the two vectors share the same memory */ PetscScalar *work; if (!mat_mkl_pardiso->schur_work) { PetscCall(PetscMalloc1(mat_mkl_pardiso->n, &work)); } else { work = mat_mkl_pardiso->schur_work; } mat_mkl_pardiso->iparm[6 - 1] = 1; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, mat_mkl_pardiso->a, mat_mkl_pardiso->ia, mat_mkl_pardiso->ja, NULL, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, (void *)xarray, (void *)work, &mat_mkl_pardiso->err)); if (!mat_mkl_pardiso->schur_work) PetscCall(PetscFree(work)); } else { mat_mkl_pardiso->iparm[6 - 1] = 0; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, mat_mkl_pardiso->a, mat_mkl_pardiso->ia, mat_mkl_pardiso->ja, mat_mkl_pardiso->perm, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, (void *)barray, (void *)xarray, &mat_mkl_pardiso->err)); } PetscCall(VecRestoreArrayRead(b, &barray)); PetscCheck(mat_mkl_pardiso->err >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Error reported by MKL PARDISO: err=%" PetscInt_FMT ". Please check manual", (PetscInt)mat_mkl_pardiso->err); if (mat_mkl_pardiso->schur) { /* solve Schur complement and expand solution */ if (!mat_mkl_pardiso->solve_interior) { PetscInt shift = mat_mkl_pardiso->schur_size; PetscCall(MatFactorFactorizeSchurComplement(A)); /* if inverted, uses BLAS *MM subroutines, otherwise LAPACK *TRS */ if (A->schur_status != MAT_FACTOR_SCHUR_INVERTED) shift = 0; /* solve Schur complement */ PetscCall(MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso, xarray, mat_mkl_pardiso->schur_work, PETSC_TRUE)); PetscCall(MatMKLPardisoSolveSchur_Private(A, mat_mkl_pardiso->schur_work, mat_mkl_pardiso->schur_work + shift)); PetscCall(MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso, xarray, mat_mkl_pardiso->schur_work + shift, PETSC_FALSE)); } else { /* if we are solving for the interior problem, any value in barray[schur] forward-substituted to xarray[schur] will be neglected */ PetscInt i; for (i = 0; i < mat_mkl_pardiso->schur_size; i++) xarray[mat_mkl_pardiso->schur_idxs[i]] = 0.; } /* expansion phase */ mat_mkl_pardiso->iparm[6 - 1] = 1; mat_mkl_pardiso->phase = JOB_SOLVE_BACKWARD_SUBSTITUTION; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, mat_mkl_pardiso->a, mat_mkl_pardiso->ia, mat_mkl_pardiso->ja, mat_mkl_pardiso->perm, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, (void *)xarray, (void *)mat_mkl_pardiso->schur_work, /* according to the specs, the solution vector is always used */ &mat_mkl_pardiso->err)); PetscCheck(mat_mkl_pardiso->err >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Error reported by MKL PARDISO: err=%" PetscInt_FMT ". Please check manual", (PetscInt)mat_mkl_pardiso->err); mat_mkl_pardiso->iparm[6 - 1] = 0; } PetscCall(VecRestoreArrayWrite(x, &xarray)); mat_mkl_pardiso->CleanUp = PETSC_TRUE; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatForwardSolve_MKL_PARDISO(Mat A, Vec b, Vec x) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)A->data; PetscScalar *xarray; const PetscScalar *barray; PetscFunctionBegin; PetscCheck(!mat_mkl_pardiso->schur, PETSC_COMM_SELF, PETSC_ERR_SUP, "Forward substitution not supported with Schur complement"); mat_mkl_pardiso->nrhs = 1; PetscCall(VecGetArrayWrite(x, &xarray)); PetscCall(VecGetArrayRead(b, &barray)); mat_mkl_pardiso->phase = JOB_SOLVE_FORWARD_SUBSTITUTION; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, mat_mkl_pardiso->a, mat_mkl_pardiso->ia, mat_mkl_pardiso->ja, mat_mkl_pardiso->perm, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, (void *)barray, (void *)xarray, &mat_mkl_pardiso->err)); PetscCheck(mat_mkl_pardiso->err >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Error reported by MKL PARDISO: err=%" PetscInt_FMT ". Please check manual", (PetscInt)mat_mkl_pardiso->err); PetscCall(VecRestoreArrayRead(b, &barray)); PetscCall(VecRestoreArrayWrite(x, &xarray)); mat_mkl_pardiso->CleanUp = PETSC_TRUE; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatBackwardSolve_MKL_PARDISO(Mat A, Vec b, Vec x) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)A->data; PetscScalar *xarray; const PetscScalar *barray; PetscFunctionBegin; PetscCheck(!mat_mkl_pardiso->schur, PETSC_COMM_SELF, PETSC_ERR_SUP, "Backward substitution not supported with Schur complement"); mat_mkl_pardiso->nrhs = 1; PetscCall(VecGetArrayWrite(x, &xarray)); PetscCall(VecGetArrayRead(b, &barray)); mat_mkl_pardiso->phase = JOB_SOLVE_BACKWARD_SUBSTITUTION; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, mat_mkl_pardiso->a, mat_mkl_pardiso->ia, mat_mkl_pardiso->ja, mat_mkl_pardiso->perm, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, (void *)barray, (void *)xarray, &mat_mkl_pardiso->err)); PetscCheck(mat_mkl_pardiso->err >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Error reported by MKL PARDISO: err=%" PetscInt_FMT ". Please check manual", (PetscInt)mat_mkl_pardiso->err); PetscCall(VecRestoreArrayRead(b, &barray)); PetscCall(VecRestoreArrayWrite(x, &xarray)); mat_mkl_pardiso->CleanUp = PETSC_TRUE; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatSolveTranspose_MKL_PARDISO(Mat A, Vec b, Vec x) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)A->data; PetscInt oiparm12; PetscFunctionBegin; oiparm12 = mat_mkl_pardiso->iparm[12 - 1]; mat_mkl_pardiso->iparm[12 - 1] = 2; PetscCall(MatSolve_MKL_PARDISO(A, b, x)); mat_mkl_pardiso->iparm[12 - 1] = oiparm12; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatMatSolve_MKL_PARDISO(Mat A, Mat B, Mat X) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)A->data; const PetscScalar *barray; PetscScalar *xarray; PetscBool flg; PetscFunctionBegin; PetscCall(PetscObjectBaseTypeCompare((PetscObject)B, MATSEQDENSE, &flg)); PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Matrix B must be MATSEQDENSE matrix"); if (X != B) { PetscCall(PetscObjectBaseTypeCompare((PetscObject)X, MATSEQDENSE, &flg)); PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Matrix X must be MATSEQDENSE matrix"); } PetscCall(MatGetSize(B, NULL, (PetscInt *)&mat_mkl_pardiso->nrhs)); if (mat_mkl_pardiso->nrhs > 0) { PetscCall(MatDenseGetArrayRead(B, &barray)); PetscCall(MatDenseGetArrayWrite(X, &xarray)); PetscCheck(barray != xarray, PETSC_COMM_SELF, PETSC_ERR_SUP, "B and X cannot share the same memory location"); if (!mat_mkl_pardiso->schur) mat_mkl_pardiso->phase = JOB_SOLVE_ITERATIVE_REFINEMENT; else mat_mkl_pardiso->phase = JOB_SOLVE_FORWARD_SUBSTITUTION; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, mat_mkl_pardiso->a, mat_mkl_pardiso->ia, mat_mkl_pardiso->ja, mat_mkl_pardiso->perm, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, (void *)barray, (void *)xarray, &mat_mkl_pardiso->err)); PetscCheck(mat_mkl_pardiso->err >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Error reported by MKL PARDISO: err=%" PetscInt_FMT ". Please check manual", (PetscInt)mat_mkl_pardiso->err); PetscCall(MatDenseRestoreArrayRead(B, &barray)); if (mat_mkl_pardiso->schur) { /* solve Schur complement and expand solution */ PetscScalar *o_schur_work = NULL; /* solve Schur complement */ if (!mat_mkl_pardiso->solve_interior) { PetscInt shift = mat_mkl_pardiso->schur_size * mat_mkl_pardiso->nrhs, scale; PetscInt mem = mat_mkl_pardiso->n * mat_mkl_pardiso->nrhs; PetscCall(MatFactorFactorizeSchurComplement(A)); /* allocate extra memory if it is needed */ scale = 1; if (A->schur_status == MAT_FACTOR_SCHUR_INVERTED) scale = 2; mem *= scale; if (mem > mat_mkl_pardiso->schur_work_size) { o_schur_work = mat_mkl_pardiso->schur_work; PetscCall(PetscMalloc1(mem, &mat_mkl_pardiso->schur_work)); } /* if inverted, uses BLAS *MM subroutines, otherwise LAPACK *TRS */ if (A->schur_status != MAT_FACTOR_SCHUR_INVERTED) shift = 0; PetscCall(MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso, xarray, mat_mkl_pardiso->schur_work, PETSC_TRUE)); PetscCall(MatMKLPardisoSolveSchur_Private(A, mat_mkl_pardiso->schur_work, mat_mkl_pardiso->schur_work + shift)); PetscCall(MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso, xarray, mat_mkl_pardiso->schur_work + shift, PETSC_FALSE)); } else { /* if we are solving for the interior problem, any value in barray[schur,n] forward-substituted to xarray[schur,n] will be neglected */ PetscInt i, n, m = 0; for (n = 0; n < mat_mkl_pardiso->nrhs; n++) { for (i = 0; i < mat_mkl_pardiso->schur_size; i++) xarray[mat_mkl_pardiso->schur_idxs[i] + m] = 0.; m += mat_mkl_pardiso->n; } } /* expansion phase */ mat_mkl_pardiso->iparm[6 - 1] = 1; mat_mkl_pardiso->phase = JOB_SOLVE_BACKWARD_SUBSTITUTION; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, mat_mkl_pardiso->a, mat_mkl_pardiso->ia, mat_mkl_pardiso->ja, mat_mkl_pardiso->perm, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, (void *)xarray, (void *)mat_mkl_pardiso->schur_work, /* according to the specs, the solution vector is always used */ &mat_mkl_pardiso->err)); if (o_schur_work) { /* restore original Schur_work (minimal size) */ PetscCall(PetscFree(mat_mkl_pardiso->schur_work)); mat_mkl_pardiso->schur_work = o_schur_work; } PetscCheck(mat_mkl_pardiso->err >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Error reported by MKL PARDISO: err=%" PetscInt_FMT ". Please check manual", (PetscInt)mat_mkl_pardiso->err); mat_mkl_pardiso->iparm[6 - 1] = 0; } PetscCall(MatDenseRestoreArrayWrite(X, &xarray)); } mat_mkl_pardiso->CleanUp = PETSC_TRUE; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatFactorNumeric_MKL_PARDISO(Mat F, Mat A, const MatFactorInfo *info) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)F->data; PetscFunctionBegin; mat_mkl_pardiso->matstruc = SAME_NONZERO_PATTERN; PetscCall((*mat_mkl_pardiso->Convert)(A, mat_mkl_pardiso->needsym, MAT_REUSE_MATRIX, &mat_mkl_pardiso->freeaij, &mat_mkl_pardiso->nz, &mat_mkl_pardiso->ia, &mat_mkl_pardiso->ja, (PetscScalar **)&mat_mkl_pardiso->a)); mat_mkl_pardiso->phase = JOB_NUMERICAL_FACTORIZATION; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, mat_mkl_pardiso->a, mat_mkl_pardiso->ia, mat_mkl_pardiso->ja, mat_mkl_pardiso->perm, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, NULL, (void *)mat_mkl_pardiso->schur, &mat_mkl_pardiso->err)); PetscCheck(mat_mkl_pardiso->err >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Error reported by MKL PARDISO: err=%" PetscInt_FMT ". Please check manual", (PetscInt)mat_mkl_pardiso->err); /* report flops */ if (mat_mkl_pardiso->iparm[18] > 0) PetscCall(PetscLogFlops(PetscPowRealInt(10., 6) * mat_mkl_pardiso->iparm[18])); if (F->schur) { /* schur output from pardiso is in row major format */ #if defined(PETSC_HAVE_CUDA) F->schur->offloadmask = PETSC_OFFLOAD_CPU; #endif PetscCall(MatFactorRestoreSchurComplement(F, NULL, MAT_FACTOR_SCHUR_UNFACTORED)); PetscCall(MatTranspose(F->schur, MAT_INPLACE_MATRIX, &F->schur)); } mat_mkl_pardiso->matstruc = SAME_NONZERO_PATTERN; mat_mkl_pardiso->CleanUp = PETSC_TRUE; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatSetFromOptions_MKL_PARDISO(Mat F, Mat A) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)F->data; PetscInt icntl, bs, threads = 1; PetscBool flg; PetscFunctionBegin; PetscOptionsBegin(PetscObjectComm((PetscObject)F), ((PetscObject)F)->prefix, "MKL_PARDISO Options", "Mat"); PetscCall(PetscOptionsInt("-mat_mkl_pardiso_65", "Suggested number of threads to use within MKL PARDISO", "None", threads, &threads, &flg)); if (flg) PetscSetMKL_PARDISOThreads((int)threads); PetscCall(PetscOptionsInt("-mat_mkl_pardiso_66", "Maximum number of factors with identical sparsity structure that must be kept in memory at the same time", "None", mat_mkl_pardiso->maxfct, &icntl, &flg)); if (flg) mat_mkl_pardiso->maxfct = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_67", "Indicates the actual matrix for the solution phase", "None", mat_mkl_pardiso->mnum, &icntl, &flg)); if (flg) mat_mkl_pardiso->mnum = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_68", "Message level information", "None", mat_mkl_pardiso->msglvl, &icntl, &flg)); if (flg) mat_mkl_pardiso->msglvl = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_69", "Defines the matrix type", "None", mat_mkl_pardiso->mtype, &icntl, &flg)); if (flg) { void *pt[IPARM_SIZE]; mat_mkl_pardiso->mtype = icntl; icntl = mat_mkl_pardiso->iparm[34]; bs = mat_mkl_pardiso->iparm[36]; MKL_PARDISO_INIT(pt, &mat_mkl_pardiso->mtype, mat_mkl_pardiso->iparm); #if defined(PETSC_USE_REAL_SINGLE) mat_mkl_pardiso->iparm[27] = 1; #else mat_mkl_pardiso->iparm[27] = 0; #endif mat_mkl_pardiso->iparm[34] = icntl; mat_mkl_pardiso->iparm[36] = bs; } PetscCall(PetscOptionsInt("-mat_mkl_pardiso_1", "Use default values (if 0)", "None", mat_mkl_pardiso->iparm[0], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[0] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_2", "Fill-in reducing ordering for the input matrix", "None", mat_mkl_pardiso->iparm[1], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[1] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_4", "Preconditioned CGS/CG", "None", mat_mkl_pardiso->iparm[3], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[3] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_5", "User permutation", "None", mat_mkl_pardiso->iparm[4], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[4] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_6", "Write solution on x", "None", mat_mkl_pardiso->iparm[5], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[5] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_8", "Iterative refinement step", "None", mat_mkl_pardiso->iparm[7], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[7] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_10", "Pivoting perturbation", "None", mat_mkl_pardiso->iparm[9], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[9] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_11", "Scaling vectors", "None", mat_mkl_pardiso->iparm[10], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[10] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_12", "Solve with transposed or conjugate transposed matrix A", "None", mat_mkl_pardiso->iparm[11], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[11] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_13", "Improved accuracy using (non-) symmetric weighted matching", "None", mat_mkl_pardiso->iparm[12], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[12] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_18", "Numbers of non-zero elements", "None", mat_mkl_pardiso->iparm[17], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[17] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_19", "Report number of floating point operations (0 to disable)", "None", mat_mkl_pardiso->iparm[18], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[18] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_21", "Pivoting for symmetric indefinite matrices", "None", mat_mkl_pardiso->iparm[20], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[20] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_24", "Parallel factorization control", "None", mat_mkl_pardiso->iparm[23], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[23] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_25", "Parallel forward/backward solve control", "None", mat_mkl_pardiso->iparm[24], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[24] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_27", "Matrix checker", "None", mat_mkl_pardiso->iparm[26], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[26] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_31", "Partial solve and computing selected components of the solution vectors", "None", mat_mkl_pardiso->iparm[30], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[30] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_34", "Optimal number of threads for conditional numerical reproducibility (CNR) mode", "None", mat_mkl_pardiso->iparm[33], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[33] = icntl; PetscCall(PetscOptionsInt("-mat_mkl_pardiso_60", "Intel MKL PARDISO mode", "None", mat_mkl_pardiso->iparm[59], &icntl, &flg)); if (flg) mat_mkl_pardiso->iparm[59] = icntl; PetscOptionsEnd(); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatFactorMKL_PARDISOInitialize_Private(Mat A, MatFactorType ftype, Mat_MKL_PARDISO *mat_mkl_pardiso) { PetscInt i, bs; PetscBool match; PetscFunctionBegin; for (i = 0; i < IPARM_SIZE; i++) mat_mkl_pardiso->iparm[i] = 0; for (i = 0; i < IPARM_SIZE; i++) mat_mkl_pardiso->pt[i] = 0; #if defined(PETSC_USE_REAL_SINGLE) mat_mkl_pardiso->iparm[27] = 1; #else mat_mkl_pardiso->iparm[27] = 0; #endif /* Default options for both sym and unsym */ mat_mkl_pardiso->iparm[0] = 1; /* Solver default parameters overridden with provided by iparm */ mat_mkl_pardiso->iparm[1] = 2; /* Metis reordering */ mat_mkl_pardiso->iparm[5] = 0; /* Write solution into x */ mat_mkl_pardiso->iparm[7] = 0; /* Max number of iterative refinement steps */ mat_mkl_pardiso->iparm[17] = -1; /* Output: Number of nonzeros in the factor LU */ mat_mkl_pardiso->iparm[18] = -1; /* Output: Mflops for LU factorization */ #if 0 mat_mkl_pardiso->iparm[23] = 1; /* Parallel factorization control*/ #endif PetscCall(PetscObjectTypeCompareAny((PetscObject)A, &match, MATSEQBAIJ, MATSEQSBAIJ, "")); PetscCall(MatGetBlockSize(A, &bs)); if (!match || bs == 1) { mat_mkl_pardiso->iparm[34] = 1; /* Cluster Sparse Solver use C-style indexing for ia and ja arrays */ mat_mkl_pardiso->n = A->rmap->N; } else { mat_mkl_pardiso->iparm[34] = 0; /* Cluster Sparse Solver use Fortran-style indexing for ia and ja arrays */ mat_mkl_pardiso->iparm[36] = bs; mat_mkl_pardiso->n = A->rmap->N / bs; } mat_mkl_pardiso->iparm[39] = 0; /* Input: matrix/rhs/solution stored on rank-0 */ mat_mkl_pardiso->CleanUp = PETSC_FALSE; mat_mkl_pardiso->maxfct = 1; /* Maximum number of numerical factorizations. */ mat_mkl_pardiso->mnum = 1; /* Which factorization to use. */ mat_mkl_pardiso->msglvl = 0; /* 0: do not print 1: Print statistical information in file */ mat_mkl_pardiso->phase = -1; mat_mkl_pardiso->err = 0; mat_mkl_pardiso->nrhs = 1; mat_mkl_pardiso->err = 0; mat_mkl_pardiso->phase = -1; if (ftype == MAT_FACTOR_LU) { mat_mkl_pardiso->iparm[9] = 13; /* Perturb the pivot elements with 1E-13 */ mat_mkl_pardiso->iparm[10] = 1; /* Use nonsymmetric permutation and scaling MPS */ mat_mkl_pardiso->iparm[12] = 1; /* Switch on Maximum Weighted Matching algorithm (default for non-symmetric) */ } else { mat_mkl_pardiso->iparm[9] = 8; /* Perturb the pivot elements with 1E-8 */ mat_mkl_pardiso->iparm[10] = 0; /* Use nonsymmetric permutation and scaling MPS */ mat_mkl_pardiso->iparm[12] = 1; /* Switch on Maximum Weighted Matching algorithm (default for non-symmetric) */ #if defined(PETSC_USE_DEBUG) mat_mkl_pardiso->iparm[26] = 1; /* Matrix checker */ #endif } PetscCall(PetscCalloc1(A->rmap->N * sizeof(INT_TYPE), &mat_mkl_pardiso->perm)); mat_mkl_pardiso->schur_size = 0; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatFactorSymbolic_AIJMKL_PARDISO_Private(Mat F, Mat A, const MatFactorInfo *info) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)F->data; PetscFunctionBegin; mat_mkl_pardiso->matstruc = DIFFERENT_NONZERO_PATTERN; PetscCall(MatSetFromOptions_MKL_PARDISO(F, A)); /* throw away any previously computed structure */ if (mat_mkl_pardiso->freeaij) { PetscCall(PetscFree2(mat_mkl_pardiso->ia, mat_mkl_pardiso->ja)); if (mat_mkl_pardiso->iparm[34] == 1) PetscCall(PetscFree(mat_mkl_pardiso->a)); } PetscCall((*mat_mkl_pardiso->Convert)(A, mat_mkl_pardiso->needsym, MAT_INITIAL_MATRIX, &mat_mkl_pardiso->freeaij, &mat_mkl_pardiso->nz, &mat_mkl_pardiso->ia, &mat_mkl_pardiso->ja, (PetscScalar **)&mat_mkl_pardiso->a)); if (mat_mkl_pardiso->iparm[34] == 1) mat_mkl_pardiso->n = A->rmap->N; else mat_mkl_pardiso->n = A->rmap->N / A->rmap->bs; mat_mkl_pardiso->phase = JOB_ANALYSIS; /* reset flops counting if requested */ if (mat_mkl_pardiso->iparm[18]) mat_mkl_pardiso->iparm[18] = -1; PetscCallPardiso(MKL_PARDISO(mat_mkl_pardiso->pt, &mat_mkl_pardiso->maxfct, &mat_mkl_pardiso->mnum, &mat_mkl_pardiso->mtype, &mat_mkl_pardiso->phase, &mat_mkl_pardiso->n, mat_mkl_pardiso->a, mat_mkl_pardiso->ia, mat_mkl_pardiso->ja, mat_mkl_pardiso->perm, &mat_mkl_pardiso->nrhs, mat_mkl_pardiso->iparm, &mat_mkl_pardiso->msglvl, NULL, NULL, &mat_mkl_pardiso->err)); PetscCheck(mat_mkl_pardiso->err >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Error reported by MKL PARDISO: err=%" PetscInt_FMT ". Please check manual", (PetscInt)mat_mkl_pardiso->err); mat_mkl_pardiso->CleanUp = PETSC_TRUE; if (F->factortype == MAT_FACTOR_LU) F->ops->lufactornumeric = MatFactorNumeric_MKL_PARDISO; else F->ops->choleskyfactornumeric = MatFactorNumeric_MKL_PARDISO; F->ops->solve = MatSolve_MKL_PARDISO; F->ops->solvetranspose = MatSolveTranspose_MKL_PARDISO; F->ops->matsolve = MatMatSolve_MKL_PARDISO; if (F->factortype == MAT_FACTOR_LU || (!PetscDefined(USE_COMPLEX) && F->factortype == MAT_FACTOR_CHOLESKY && A->spd == PETSC_BOOL3_TRUE)) { F->ops->backwardsolve = MatBackwardSolve_MKL_PARDISO; F->ops->forwardsolve = MatForwardSolve_MKL_PARDISO; } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatLUFactorSymbolic_AIJMKL_PARDISO(Mat F, Mat A, IS r, IS c, const MatFactorInfo *info) { PetscFunctionBegin; PetscCall(MatFactorSymbolic_AIJMKL_PARDISO_Private(F, A, info)); PetscFunctionReturn(PETSC_SUCCESS); } #if !defined(PETSC_USE_COMPLEX) static PetscErrorCode MatGetInertia_MKL_PARDISO(Mat F, PetscInt *nneg, PetscInt *nzero, PetscInt *npos) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)F->data; PetscFunctionBegin; if (nneg) *nneg = mat_mkl_pardiso->iparm[22]; if (npos) *npos = mat_mkl_pardiso->iparm[21]; if (nzero) *nzero = F->rmap->N - (mat_mkl_pardiso->iparm[22] + mat_mkl_pardiso->iparm[21]); PetscFunctionReturn(PETSC_SUCCESS); } #endif static PetscErrorCode MatCholeskyFactorSymbolic_AIJMKL_PARDISO(Mat F, Mat A, IS r, const MatFactorInfo *info) { PetscFunctionBegin; PetscCall(MatFactorSymbolic_AIJMKL_PARDISO_Private(F, A, info)); F->ops->getinertia = NULL; #if !defined(PETSC_USE_COMPLEX) F->ops->getinertia = MatGetInertia_MKL_PARDISO; #endif PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatView_MKL_PARDISO(Mat A, PetscViewer viewer) { PetscBool isascii; PetscViewerFormat format; Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)A->data; PetscInt i; PetscFunctionBegin; if (A->ops->solve != MatSolve_MKL_PARDISO) PetscFunctionReturn(PETSC_SUCCESS); PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); if (isascii) { PetscCall(PetscViewerGetFormat(viewer, &format)); if (format == PETSC_VIEWER_ASCII_INFO) { PetscCall(PetscViewerASCIIPrintf(viewer, "MKL PARDISO run parameters:\n")); PetscCall(PetscViewerASCIIPrintf(viewer, "MKL PARDISO phase: %" PetscInt_FMT "\n", (PetscInt)mat_mkl_pardiso->phase)); for (i = 1; i <= 64; i++) PetscCall(PetscViewerASCIIPrintf(viewer, "MKL PARDISO iparm[%" PetscInt_FMT "]: %" PetscInt_FMT "\n", i, (PetscInt)mat_mkl_pardiso->iparm[i - 1])); PetscCall(PetscViewerASCIIPrintf(viewer, "MKL PARDISO maxfct: %" PetscInt_FMT "\n", (PetscInt)mat_mkl_pardiso->maxfct)); PetscCall(PetscViewerASCIIPrintf(viewer, "MKL PARDISO mnum: %" PetscInt_FMT "\n", (PetscInt)mat_mkl_pardiso->mnum)); PetscCall(PetscViewerASCIIPrintf(viewer, "MKL PARDISO mtype: %" PetscInt_FMT "\n", (PetscInt)mat_mkl_pardiso->mtype)); PetscCall(PetscViewerASCIIPrintf(viewer, "MKL PARDISO n: %" PetscInt_FMT "\n", (PetscInt)mat_mkl_pardiso->n)); PetscCall(PetscViewerASCIIPrintf(viewer, "MKL PARDISO nrhs: %" PetscInt_FMT "\n", (PetscInt)mat_mkl_pardiso->nrhs)); PetscCall(PetscViewerASCIIPrintf(viewer, "MKL PARDISO msglvl: %" PetscInt_FMT "\n", (PetscInt)mat_mkl_pardiso->msglvl)); } } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatGetInfo_MKL_PARDISO(Mat A, MatInfoType flag, MatInfo *info) { Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)A->data; PetscFunctionBegin; info->block_size = 1.0; info->nz_used = mat_mkl_pardiso->iparm[17]; info->nz_allocated = mat_mkl_pardiso->iparm[17]; info->nz_unneeded = 0.0; info->assemblies = 0.0; info->mallocs = 0.0; info->memory = 0.0; info->fill_ratio_given = 0; info->fill_ratio_needed = 0; info->factor_mallocs = 0; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatMkl_PardisoSetCntl_MKL_PARDISO(Mat F, PetscInt icntl, PetscInt ival) { PetscInt backup, bs; Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO *)F->data; PetscFunctionBegin; if (icntl <= 64) { mat_mkl_pardiso->iparm[icntl - 1] = ival; } else { if (icntl == 65) PetscSetMKL_PARDISOThreads((int)ival); else if (icntl == 66) mat_mkl_pardiso->maxfct = ival; else if (icntl == 67) mat_mkl_pardiso->mnum = ival; else if (icntl == 68) mat_mkl_pardiso->msglvl = ival; else if (icntl == 69) { void *pt[IPARM_SIZE]; backup = mat_mkl_pardiso->iparm[34]; bs = mat_mkl_pardiso->iparm[36]; mat_mkl_pardiso->mtype = ival; MKL_PARDISO_INIT(pt, &mat_mkl_pardiso->mtype, mat_mkl_pardiso->iparm); #if defined(PETSC_USE_REAL_SINGLE) mat_mkl_pardiso->iparm[27] = 1; #else mat_mkl_pardiso->iparm[27] = 0; #endif mat_mkl_pardiso->iparm[34] = backup; mat_mkl_pardiso->iparm[36] = bs; } else if (icntl == 70) mat_mkl_pardiso->solve_interior = (PetscBool)!!ival; } PetscFunctionReturn(PETSC_SUCCESS); } /*@ MatMkl_PardisoSetCntl - Set MKL PARDISO parameters Logically Collective Input Parameters: + F - the factored matrix obtained by calling `MatGetFactor()` . icntl - index of MKL PARDISO parameter - ival - value of MKL PARDISO parameter Options Database Key: . -mat_mkl_pardiso_ - change the option numbered icntl to the value ival Level: beginner .seealso: [](ch_matrices), `Mat`, `MATSOLVERMKL_PARDISO`, `MatGetFactor()` @*/ PetscErrorCode MatMkl_PardisoSetCntl(Mat F, PetscInt icntl, PetscInt ival) { PetscFunctionBegin; PetscTryMethod(F, "MatMkl_PardisoSetCntl_C", (Mat, PetscInt, PetscInt), (F, icntl, ival)); PetscFunctionReturn(PETSC_SUCCESS); } /*MC MATSOLVERMKL_PARDISO - A matrix type providing direct solvers, LU, for `MATSEQAIJ` matrices via the external package MKL PARDISO . Use `-pc_type lu` `-pc_factor_mat_solver_type mkl_pardiso` to use this direct solver Options Database Keys: + -mat_mkl_pardiso_65 - Suggested number of threads to use within MKL PARDISO . -mat_mkl_pardiso_66 - Maximum number of factors with identical sparsity structure that must be kept in memory at the same time . -mat_mkl_pardiso_67 - Indicates the actual matrix for the solution phase . -mat_mkl_pardiso_68 - Message level information, use 1 to get detailed information on the solver options . -mat_mkl_pardiso_69 - Defines the matrix type. IMPORTANT: When you set this flag, iparm parameters are going to be set to the default ones for the matrix type . -mat_mkl_pardiso_1 - Use default values . -mat_mkl_pardiso_2 - Fill-in reducing ordering for the input matrix . -mat_mkl_pardiso_4 - Preconditioned CGS/CG . -mat_mkl_pardiso_5 - User permutation . -mat_mkl_pardiso_6 - Write solution on x . -mat_mkl_pardiso_8 - Iterative refinement step . -mat_mkl_pardiso_10 - Pivoting perturbation . -mat_mkl_pardiso_11 - Scaling vectors . -mat_mkl_pardiso_12 - Solve with transposed or conjugate transposed matrix A . -mat_mkl_pardiso_13 - Improved accuracy using (non-) symmetric weighted matching . -mat_mkl_pardiso_18 - Numbers of non-zero elements . -mat_mkl_pardiso_19 - Report number of floating point operations . -mat_mkl_pardiso_21 - Pivoting for symmetric indefinite matrices . -mat_mkl_pardiso_24 - Parallel factorization control . -mat_mkl_pardiso_25 - Parallel forward/backward solve control . -mat_mkl_pardiso_27 - Matrix checker . -mat_mkl_pardiso_31 - Partial solve and computing selected components of the solution vectors . -mat_mkl_pardiso_34 - Optimal number of threads for conditional numerical reproducibility (CNR) mode - -mat_mkl_pardiso_60 - Intel MKL PARDISO mode Level: beginner Notes: Use `-mat_mkl_pardiso_68 1` to display the number of threads the solver is using. MKL does not provide a way to directly access this information. For more information on the options check the MKL PARDISO manual .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `PCFactorSetMatSolverType()`, `MatSolverType`, `MatMkl_PardisoSetCntl()`, `MATSOLVERMKL_CPARDISO` M*/ static PetscErrorCode MatFactorGetSolverType_mkl_pardiso(Mat A, MatSolverType *type) { PetscFunctionBegin; *type = MATSOLVERMKL_PARDISO; PetscFunctionReturn(PETSC_SUCCESS); } PETSC_EXTERN PetscErrorCode MatGetFactor_aij_mkl_pardiso(Mat A, MatFactorType ftype, Mat *F) { Mat B; Mat_MKL_PARDISO *mat_mkl_pardiso; PetscBool isSeqAIJ, isSeqBAIJ, isSeqSBAIJ; PetscFunctionBegin; PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQAIJ, &isSeqAIJ)); PetscCall(PetscObjectTypeCompare((PetscObject)A, MATSEQBAIJ, &isSeqBAIJ)); PetscCall(PetscObjectTypeCompare((PetscObject)A, MATSEQSBAIJ, &isSeqSBAIJ)); PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); PetscCall(PetscStrallocpy("mkl_pardiso", &((PetscObject)B)->type_name)); PetscCall(MatSetUp(B)); PetscCall(PetscNew(&mat_mkl_pardiso)); B->data = mat_mkl_pardiso; PetscCall(MatFactorMKL_PARDISOInitialize_Private(A, ftype, mat_mkl_pardiso)); if (ftype == MAT_FACTOR_LU) { B->ops->lufactorsymbolic = MatLUFactorSymbolic_AIJMKL_PARDISO; B->factortype = MAT_FACTOR_LU; mat_mkl_pardiso->needsym = PETSC_FALSE; if (isSeqAIJ) mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqaij; else if (isSeqBAIJ) mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqbaij; else { PetscCheck(!isSeqSBAIJ, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for MKL PARDISO LU factor with SEQSBAIJ format! Use MAT_FACTOR_CHOLESKY instead"); SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for MKL PARDISO LU with %s format", ((PetscObject)A)->type_name); } #if defined(PETSC_USE_COMPLEX) mat_mkl_pardiso->mtype = 13; #else mat_mkl_pardiso->mtype = 11; #endif } else { B->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_AIJMKL_PARDISO; B->factortype = MAT_FACTOR_CHOLESKY; if (isSeqAIJ) mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqaij; else if (isSeqBAIJ) mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqbaij; else if (isSeqSBAIJ) mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqsbaij; else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for PARDISO CHOLESKY with %s format", ((PetscObject)A)->type_name); mat_mkl_pardiso->needsym = PETSC_TRUE; #if !defined(PETSC_USE_COMPLEX) if (A->spd == PETSC_BOOL3_TRUE) mat_mkl_pardiso->mtype = 2; else mat_mkl_pardiso->mtype = -2; #else mat_mkl_pardiso->mtype = 6; PetscCheck(A->hermitian != PETSC_BOOL3_TRUE, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for MKL PARDISO CHOLESKY with Hermitian matrices! Use MAT_FACTOR_LU instead"); #endif } B->ops->destroy = MatDestroy_MKL_PARDISO; B->ops->view = MatView_MKL_PARDISO; B->ops->getinfo = MatGetInfo_MKL_PARDISO; B->factortype = ftype; B->assembled = PETSC_TRUE; PetscCall(PetscFree(B->solvertype)); PetscCall(PetscStrallocpy(MATSOLVERMKL_PARDISO, &B->solvertype)); PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatFactorGetSolverType_C", MatFactorGetSolverType_mkl_pardiso)); PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatFactorSetSchurIS_C", MatFactorSetSchurIS_MKL_PARDISO)); PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMkl_PardisoSetCntl_C", MatMkl_PardisoSetCntl_MKL_PARDISO)); *F = B; PetscFunctionReturn(PETSC_SUCCESS); } PETSC_INTERN PetscErrorCode MatSolverTypeRegister_MKL_Pardiso(void) { PetscFunctionBegin; PetscCall(MatSolverTypeRegister(MATSOLVERMKL_PARDISO, MATSEQAIJ, MAT_FACTOR_LU, MatGetFactor_aij_mkl_pardiso)); PetscCall(MatSolverTypeRegister(MATSOLVERMKL_PARDISO, MATSEQAIJ, MAT_FACTOR_CHOLESKY, MatGetFactor_aij_mkl_pardiso)); PetscCall(MatSolverTypeRegister(MATSOLVERMKL_PARDISO, MATSEQBAIJ, MAT_FACTOR_LU, MatGetFactor_aij_mkl_pardiso)); PetscCall(MatSolverTypeRegister(MATSOLVERMKL_PARDISO, MATSEQSBAIJ, MAT_FACTOR_CHOLESKY, MatGetFactor_aij_mkl_pardiso)); PetscFunctionReturn(PETSC_SUCCESS); }