/* This file implements a subclass of the SeqAIJ matrix class that uses the SuperLU sparse solver. */ /* Defines the data structure for the base matrix type (SeqAIJ) */ #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ /* SuperLU include files */ EXTERN_C_BEGIN #if defined(PETSC_USE_COMPLEX) #if defined(PETSC_USE_REAL_SINGLE) #include #else #include #endif #else #if defined(PETSC_USE_REAL_SINGLE) #include #else #include #endif #endif #include EXTERN_C_END /* This is the data that defines the SuperLU factored matrix type */ typedef struct { SuperMatrix A, L, U, B, X; superlu_options_t options; PetscInt *perm_c; /* column permutation vector */ PetscInt *perm_r; /* row permutations from partial pivoting */ PetscInt *etree; PetscReal *R, *C; char equed[1]; PetscInt lwork; void *work; PetscReal rpg, rcond; mem_usage_t mem_usage; MatStructure flg; SuperLUStat_t stat; Mat A_dup; PetscScalar *rhs_dup; GlobalLU_t Glu; PetscBool needconversion; /* Flag to clean up (non-global) SuperLU objects during Destroy */ PetscBool CleanUpSuperLU; } Mat_SuperLU; /* Utility function */ static PetscErrorCode MatView_Info_SuperLU(Mat A, PetscViewer viewer) { Mat_SuperLU *lu = (Mat_SuperLU *)A->data; superlu_options_t options; PetscFunctionBegin; options = lu->options; PetscCall(PetscViewerASCIIPrintf(viewer, "SuperLU run parameters:\n")); PetscCall(PetscViewerASCIIPrintf(viewer, " Equil: %s\n", (options.Equil != NO) ? "YES" : "NO")); PetscCall(PetscViewerASCIIPrintf(viewer, " ColPerm: %" PetscInt_FMT "\n", options.ColPerm)); PetscCall(PetscViewerASCIIPrintf(viewer, " IterRefine: %" PetscInt_FMT "\n", options.IterRefine)); PetscCall(PetscViewerASCIIPrintf(viewer, " SymmetricMode: %s\n", (options.SymmetricMode != NO) ? "YES" : "NO")); PetscCall(PetscViewerASCIIPrintf(viewer, " DiagPivotThresh: %g\n", options.DiagPivotThresh)); PetscCall(PetscViewerASCIIPrintf(viewer, " PivotGrowth: %s\n", (options.PivotGrowth != NO) ? "YES" : "NO")); PetscCall(PetscViewerASCIIPrintf(viewer, " ConditionNumber: %s\n", (options.ConditionNumber != NO) ? "YES" : "NO")); PetscCall(PetscViewerASCIIPrintf(viewer, " RowPerm: %" PetscInt_FMT "\n", options.RowPerm)); PetscCall(PetscViewerASCIIPrintf(viewer, " ReplaceTinyPivot: %s\n", (options.ReplaceTinyPivot != NO) ? "YES" : "NO")); PetscCall(PetscViewerASCIIPrintf(viewer, " PrintStat: %s\n", (options.PrintStat != NO) ? "YES" : "NO")); PetscCall(PetscViewerASCIIPrintf(viewer, " lwork: %" PetscInt_FMT "\n", lu->lwork)); if (A->factortype == MAT_FACTOR_ILU) { PetscCall(PetscViewerASCIIPrintf(viewer, " ILU_DropTol: %g\n", options.ILU_DropTol)); PetscCall(PetscViewerASCIIPrintf(viewer, " ILU_FillTol: %g\n", options.ILU_FillTol)); PetscCall(PetscViewerASCIIPrintf(viewer, " ILU_FillFactor: %g\n", options.ILU_FillFactor)); PetscCall(PetscViewerASCIIPrintf(viewer, " ILU_DropRule: %" PetscInt_FMT "\n", options.ILU_DropRule)); PetscCall(PetscViewerASCIIPrintf(viewer, " ILU_Norm: %" PetscInt_FMT "\n", options.ILU_Norm)); PetscCall(PetscViewerASCIIPrintf(viewer, " ILU_MILU: %" PetscInt_FMT "\n", options.ILU_MILU)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatSolve_SuperLU_Private(Mat A, Vec b, Vec x) { Mat_SuperLU *lu = (Mat_SuperLU *)A->data; const PetscScalar *barray; PetscScalar *xarray; PetscInt info, i, n; PetscReal ferr, berr; static PetscBool cite = PETSC_FALSE; PetscFunctionBegin; if (lu->lwork == -1) PetscFunctionReturn(PETSC_SUCCESS); PetscCall(PetscCitationsRegister("@article{superlu99,\n author = {James W. Demmel and Stanley C. Eisenstat and\n John R. Gilbert and Xiaoye S. Li and Joseph W. H. Liu},\n title = {A supernodal approach to sparse partial " "pivoting},\n journal = {SIAM J. Matrix Analysis and Applications},\n year = {1999},\n volume = {20},\n number = {3},\n pages = {720-755}\n}\n", &cite)); PetscCall(VecGetLocalSize(x, &n)); lu->B.ncol = 1; /* Set the number of right-hand side */ if (lu->options.Equil && !lu->rhs_dup) { /* superlu overwrites b when Equil is used, thus create rhs_dup to keep user's b unchanged */ PetscCall(PetscMalloc1(n, &lu->rhs_dup)); } if (lu->options.Equil) { /* Copy b into rsh_dup */ PetscCall(VecGetArrayRead(b, &barray)); PetscCall(PetscArraycpy(lu->rhs_dup, barray, n)); PetscCall(VecRestoreArrayRead(b, &barray)); barray = lu->rhs_dup; } else { PetscCall(VecGetArrayRead(b, &barray)); } PetscCall(VecGetArray(x, &xarray)); #if defined(PETSC_USE_COMPLEX) #if defined(PETSC_USE_REAL_SINGLE) ((DNformat *)lu->B.Store)->nzval = (singlecomplex *)barray; ((DNformat *)lu->X.Store)->nzval = (singlecomplex *)xarray; #else ((DNformat *)lu->B.Store)->nzval = (doublecomplex *)barray; ((DNformat *)lu->X.Store)->nzval = (doublecomplex *)xarray; #endif #else ((DNformat *)lu->B.Store)->nzval = (void *)barray; ((DNformat *)lu->X.Store)->nzval = xarray; #endif lu->options.Fact = FACTORED; /* Indicate the factored form of A is supplied. */ if (A->factortype == MAT_FACTOR_LU) { #if defined(PETSC_USE_COMPLEX) #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:cgssvx", cgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->Glu, &lu->mem_usage, &lu->stat, &info)); #else PetscStackCallExternalVoid("SuperLU:zgssvx", zgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->Glu, &lu->mem_usage, &lu->stat, &info)); #endif #else #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:sgssvx", sgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->Glu, &lu->mem_usage, &lu->stat, &info)); #else PetscStackCallExternalVoid("SuperLU:dgssvx", dgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->Glu, &lu->mem_usage, &lu->stat, &info)); #endif #endif } else if (A->factortype == MAT_FACTOR_ILU) { #if defined(PETSC_USE_COMPLEX) #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:cgsisx", cgsisx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &lu->Glu, &lu->mem_usage, &lu->stat, &info)); #else PetscStackCallExternalVoid("SuperLU:zgsisx", zgsisx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &lu->Glu, &lu->mem_usage, &lu->stat, &info)); #endif #else #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:sgsisx", sgsisx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &lu->Glu, &lu->mem_usage, &lu->stat, &info)); #else PetscStackCallExternalVoid("SuperLU:dgsisx", dgsisx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &lu->Glu, &lu->mem_usage, &lu->stat, &info)); #endif #endif } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Factor type not supported"); if (!lu->options.Equil) PetscCall(VecRestoreArrayRead(b, &barray)); PetscCall(VecRestoreArray(x, &xarray)); if (!info || info == lu->A.ncol + 1) { if (lu->options.IterRefine) { PetscCall(PetscPrintf(PETSC_COMM_SELF, "Iterative Refinement:\n")); PetscCall(PetscPrintf(PETSC_COMM_SELF, " %8s%8s%16s%16s\n", "rhs", "Steps", "FERR", "BERR")); for (i = 0; i < 1; ++i) PetscCall(PetscPrintf(PETSC_COMM_SELF, " %8d%8d%16e%16e\n", i + 1, lu->stat.RefineSteps, ferr, berr)); } } else if (info > 0) { if (lu->lwork == -1) { PetscCall(PetscPrintf(PETSC_COMM_SELF, " ** Estimated memory: %" PetscInt_FMT " bytes\n", info - lu->A.ncol)); } else { PetscCall(PetscPrintf(PETSC_COMM_SELF, " Warning: gssvx() returns info %" PetscInt_FMT "\n", info)); } } else PetscCheck(info >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "info = %" PetscInt_FMT ", the %" PetscInt_FMT "-th argument in gssvx() had an illegal value", info, -info); if (lu->options.PrintStat) { PetscCall(PetscPrintf(PETSC_COMM_SELF, "MatSolve__SuperLU():\n")); PetscStackCallExternalVoid("SuperLU:StatPrint", StatPrint(&lu->stat)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatSolve_SuperLU(Mat A, Vec b, Vec x) { Mat_SuperLU *lu = (Mat_SuperLU *)A->data; trans_t oldOption; PetscFunctionBegin; PetscCall(VecFlag(x, A->factorerrortype)); if (A->factorerrortype) { PetscCall(PetscInfo(A, "MatSolve is called with singular matrix factor, skip\n")); PetscFunctionReturn(PETSC_SUCCESS); } oldOption = lu->options.Trans; lu->options.Trans = TRANS; PetscCall(MatSolve_SuperLU_Private(A, b, x)); lu->options.Trans = oldOption; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatSolveTranspose_SuperLU(Mat A, Vec b, Vec x) { Mat_SuperLU *lu = (Mat_SuperLU *)A->data; trans_t oldOption; PetscFunctionBegin; PetscCall(VecFlag(x, A->factorerrortype)); if (A->factorerrortype) { PetscCall(PetscInfo(A, "MatSolve is called with singular matrix factor, skip\n")); PetscFunctionReturn(PETSC_SUCCESS); } oldOption = lu->options.Trans; lu->options.Trans = NOTRANS; PetscCall(MatSolve_SuperLU_Private(A, b, x)); lu->options.Trans = oldOption; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatLUFactorNumeric_SuperLU(Mat F, Mat A, const MatFactorInfo *info) { Mat_SuperLU *lu = (Mat_SuperLU *)F->data; Mat_SeqAIJ *aa; PetscInt sinfo; PetscReal ferr, berr; NCformat *Ustore; SCformat *Lstore; PetscFunctionBegin; if (lu->flg == SAME_NONZERO_PATTERN) { /* successive numerical factorization */ lu->options.Fact = SamePattern; /* Ref: ~SuperLU_3.0/EXAMPLE/dlinsolx2.c */ Destroy_SuperMatrix_Store(&lu->A); if (lu->A_dup) PetscCall(MatCopy_SeqAIJ(A, lu->A_dup, SAME_NONZERO_PATTERN)); if (lu->lwork >= 0) { PetscStackCallExternalVoid("SuperLU:Destroy_SuperNode_Matrix", Destroy_SuperNode_Matrix(&lu->L)); PetscStackCallExternalVoid("SuperLU:Destroy_CompCol_Matrix", Destroy_CompCol_Matrix(&lu->U)); lu->options.Fact = SamePattern; } } /* Create the SuperMatrix for lu->A=A^T: Since SuperLU likes column-oriented matrices,we pass it the transpose, and then solve A^T X = B in MatSolve(). */ if (lu->A_dup) { aa = (Mat_SeqAIJ *)lu->A_dup->data; } else { aa = (Mat_SeqAIJ *)A->data; } #if defined(PETSC_USE_COMPLEX) #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:cCreate_CompCol_Matrix", cCreate_CompCol_Matrix(&lu->A, A->cmap->n, A->rmap->n, aa->nz, (singlecomplex *)aa->a, aa->j, aa->i, SLU_NC, SLU_C, SLU_GE)); #else PetscStackCallExternalVoid("SuperLU:zCreate_CompCol_Matrix", zCreate_CompCol_Matrix(&lu->A, A->cmap->n, A->rmap->n, aa->nz, (doublecomplex *)aa->a, aa->j, aa->i, SLU_NC, SLU_Z, SLU_GE)); #endif #else #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:sCreate_CompCol_Matrix", sCreate_CompCol_Matrix(&lu->A, A->cmap->n, A->rmap->n, aa->nz, aa->a, aa->j, aa->i, SLU_NC, SLU_S, SLU_GE)); #else PetscStackCallExternalVoid("SuperLU:dCreate_CompCol_Matrix", dCreate_CompCol_Matrix(&lu->A, A->cmap->n, A->rmap->n, aa->nz, aa->a, aa->j, aa->i, SLU_NC, SLU_D, SLU_GE)); #endif #endif /* Numerical factorization */ lu->B.ncol = 0; /* Indicate not to solve the system */ if (F->factortype == MAT_FACTOR_LU) { #if defined(PETSC_USE_COMPLEX) #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:cgssvx", cgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->Glu, &lu->mem_usage, &lu->stat, &sinfo)); #else PetscStackCallExternalVoid("SuperLU:zgssvx", zgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->Glu, &lu->mem_usage, &lu->stat, &sinfo)); #endif #else #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:sgssvx", sgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->Glu, &lu->mem_usage, &lu->stat, &sinfo)); #else PetscStackCallExternalVoid("SuperLU:dgssvx", dgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->Glu, &lu->mem_usage, &lu->stat, &sinfo)); #endif #endif } else if (F->factortype == MAT_FACTOR_ILU) { /* Compute the incomplete factorization, condition number and pivot growth */ #if defined(PETSC_USE_COMPLEX) #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:cgsisx", cgsisx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &lu->Glu, &lu->mem_usage, &lu->stat, &sinfo)); #else PetscStackCallExternalVoid("SuperLU:zgsisx", zgsisx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &lu->Glu, &lu->mem_usage, &lu->stat, &sinfo)); #endif #else #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:sgsisx", sgsisx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &lu->Glu, &lu->mem_usage, &lu->stat, &sinfo)); #else PetscStackCallExternalVoid("SuperLU:dgsisx", dgsisx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &lu->Glu, &lu->mem_usage, &lu->stat, &sinfo)); #endif #endif } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Factor type not supported"); if (!sinfo || sinfo == lu->A.ncol + 1) { if (lu->options.PivotGrowth) PetscCall(PetscPrintf(PETSC_COMM_SELF, " Recip. pivot growth = %e\n", lu->rpg)); if (lu->options.ConditionNumber) PetscCall(PetscPrintf(PETSC_COMM_SELF, " Recip. condition number = %e\n", lu->rcond)); } else if (sinfo > 0) { if (A->erroriffailure) { SETERRQ(PETSC_COMM_SELF, PETSC_ERR_MAT_LU_ZRPVT, "Zero pivot in row %" PetscInt_FMT, sinfo); } else { if (sinfo <= lu->A.ncol) { if (lu->options.ILU_FillTol == 0.0) F->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; PetscCall(PetscInfo(F, "Number of zero pivots %" PetscInt_FMT ", ILU_FillTol %g\n", sinfo, lu->options.ILU_FillTol)); } else if (sinfo == lu->A.ncol + 1) { /* U is nonsingular, but RCOND is less than machine precision, meaning that the matrix is singular to working precision. Nevertheless, the solution and error bounds are computed because there are a number of situations where the computed solution can be more accurate than the value of RCOND would suggest. */ PetscCall(PetscInfo(F, "Matrix factor U is nonsingular, but is singular to working precision. The solution is computed. info %" PetscInt_FMT "\n", sinfo)); } else { /* sinfo > lu->A.ncol + 1 */ F->factorerrortype = MAT_FACTOR_OUTMEMORY; PetscCall(PetscInfo(F, "Number of bytes allocated when memory allocation fails %" PetscInt_FMT "\n", sinfo)); } } } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "info = %" PetscInt_FMT ", the %" PetscInt_FMT "-th argument in gssvx() had an illegal value", sinfo, -sinfo); if (lu->options.PrintStat) { PetscCall(PetscPrintf(PETSC_COMM_SELF, "MatLUFactorNumeric_SuperLU():\n")); PetscStackCallExternalVoid("SuperLU:StatPrint", StatPrint(&lu->stat)); Lstore = (SCformat *)lu->L.Store; Ustore = (NCformat *)lu->U.Store; PetscCall(PetscPrintf(PETSC_COMM_SELF, " No of nonzeros in factor L = %" PetscInt_FMT "\n", Lstore->nnz)); PetscCall(PetscPrintf(PETSC_COMM_SELF, " No of nonzeros in factor U = %" PetscInt_FMT "\n", Ustore->nnz)); PetscCall(PetscPrintf(PETSC_COMM_SELF, " No of nonzeros in L+U = %" PetscInt_FMT "\n", Lstore->nnz + Ustore->nnz - lu->A.ncol)); PetscCall(PetscPrintf(PETSC_COMM_SELF, " L\\U MB %.3f\ttotal MB needed %.3f\n", lu->mem_usage.for_lu / 1e6, lu->mem_usage.total_needed / 1e6)); } lu->flg = SAME_NONZERO_PATTERN; F->ops->solve = MatSolve_SuperLU; F->ops->solvetranspose = MatSolveTranspose_SuperLU; F->ops->matsolve = NULL; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatDestroy_SuperLU(Mat A) { Mat_SuperLU *lu = (Mat_SuperLU *)A->data; PetscFunctionBegin; if (lu->CleanUpSuperLU) { /* Free the SuperLU datastructures */ PetscStackCallExternalVoid("SuperLU:Destroy_SuperMatrix_Store", Destroy_SuperMatrix_Store(&lu->A)); if (lu->lwork >= 0) { PetscStackCallExternalVoid("SuperLU:Destroy_SuperNode_Matrix", Destroy_SuperNode_Matrix(&lu->L)); PetscStackCallExternalVoid("SuperLU:Destroy_CompCol_Matrix", Destroy_CompCol_Matrix(&lu->U)); } } PetscStackCallExternalVoid("SuperLU:Destroy_SuperMatrix_Store", Destroy_SuperMatrix_Store(&lu->B)); PetscStackCallExternalVoid("SuperLU:Destroy_SuperMatrix_Store", Destroy_SuperMatrix_Store(&lu->X)); PetscStackCallExternalVoid("SuperLU:StatFree", StatFree(&lu->stat)); PetscCall(PetscFree(lu->etree)); PetscCall(PetscFree(lu->perm_r)); PetscCall(PetscFree(lu->perm_c)); PetscCall(PetscFree(lu->R)); PetscCall(PetscFree(lu->C)); PetscCall(PetscFree(lu->rhs_dup)); PetscCall(MatDestroy(&lu->A_dup)); PetscCall(PetscFree(A->data)); /* clear composed functions */ PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorGetSolverType_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSuperluSetILUDropTol_C", NULL)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatView_SuperLU(Mat A, PetscViewer viewer) { PetscBool isascii; PetscViewerFormat format; PetscFunctionBegin; PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); if (isascii) { PetscCall(PetscViewerGetFormat(viewer, &format)); if (format == PETSC_VIEWER_ASCII_INFO) PetscCall(MatView_Info_SuperLU(A, viewer)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatLUFactorSymbolic_SuperLU(Mat F, Mat A, IS r, IS c, const MatFactorInfo *info) { Mat_SuperLU *lu = (Mat_SuperLU *)F->data; PetscInt indx; PetscBool flg, set; PetscReal real_input; const char *colperm[] = {"NATURAL", "MMD_ATA", "MMD_AT_PLUS_A", "COLAMD"}; /* MY_PERMC - not supported by the PETSc interface yet */ const char *iterrefine[] = {"NOREFINE", "SINGLE", "DOUBLE", "EXTRA"}; const char *rowperm[] = {"NOROWPERM", "LargeDiag"}; /* MY_PERMC - not supported by the PETSc interface yet */ PetscFunctionBegin; /* Set options to F */ PetscOptionsBegin(PetscObjectComm((PetscObject)F), ((PetscObject)F)->prefix, "SuperLU Options", "Mat"); PetscCall(PetscOptionsBool("-mat_superlu_equil", "Equil", "None", (PetscBool)lu->options.Equil, (PetscBool *)&lu->options.Equil, NULL)); PetscCall(PetscOptionsEList("-mat_superlu_colperm", "ColPerm", "None", colperm, 4, colperm[3], &indx, &flg)); if (flg) lu->options.ColPerm = (colperm_t)indx; PetscCall(PetscOptionsEList("-mat_superlu_iterrefine", "IterRefine", "None", iterrefine, 4, iterrefine[0], &indx, &flg)); if (flg) lu->options.IterRefine = (IterRefine_t)indx; PetscCall(PetscOptionsBool("-mat_superlu_symmetricmode", "SymmetricMode", "None", (PetscBool)lu->options.SymmetricMode, &flg, &set)); if (set && flg) lu->options.SymmetricMode = YES; PetscCall(PetscOptionsReal("-mat_superlu_diagpivotthresh", "DiagPivotThresh", "None", lu->options.DiagPivotThresh, &real_input, &flg)); if (flg) lu->options.DiagPivotThresh = (double)real_input; PetscCall(PetscOptionsBool("-mat_superlu_pivotgrowth", "PivotGrowth", "None", (PetscBool)lu->options.PivotGrowth, &flg, &set)); if (set && flg) lu->options.PivotGrowth = YES; PetscCall(PetscOptionsBool("-mat_superlu_conditionnumber", "ConditionNumber", "None", (PetscBool)lu->options.ConditionNumber, &flg, &set)); if (set && flg) lu->options.ConditionNumber = YES; PetscCall(PetscOptionsEList("-mat_superlu_rowperm", "rowperm", "None", rowperm, 2, rowperm[lu->options.RowPerm], &indx, &flg)); if (flg) lu->options.RowPerm = (rowperm_t)indx; PetscCall(PetscOptionsBool("-mat_superlu_replacetinypivot", "ReplaceTinyPivot", "None", (PetscBool)lu->options.ReplaceTinyPivot, &flg, &set)); if (set && flg) lu->options.ReplaceTinyPivot = YES; PetscCall(PetscOptionsBool("-mat_superlu_printstat", "PrintStat", "None", (PetscBool)lu->options.PrintStat, &flg, &set)); if (set && flg) lu->options.PrintStat = YES; PetscCall(PetscOptionsInt("-mat_superlu_lwork", "size of work array in bytes used by factorization", "None", lu->lwork, &lu->lwork, NULL)); if (lu->lwork > 0) { /* lwork is in bytes, hence PetscMalloc() is used here, not PetscMalloc1()*/ PetscCall(PetscMalloc(lu->lwork, &lu->work)); } else if (lu->lwork != 0 && lu->lwork != -1) { PetscCall(PetscPrintf(PETSC_COMM_SELF, " Warning: lwork %" PetscInt_FMT " is not supported by SUPERLU. The default lwork=0 is used.\n", lu->lwork)); lu->lwork = 0; } /* ilu options */ PetscCall(PetscOptionsReal("-mat_superlu_ilu_droptol", "ILU_DropTol", "None", lu->options.ILU_DropTol, &real_input, &flg)); if (flg) lu->options.ILU_DropTol = (double)real_input; PetscCall(PetscOptionsReal("-mat_superlu_ilu_filltol", "ILU_FillTol", "None", lu->options.ILU_FillTol, &real_input, &flg)); if (flg) lu->options.ILU_FillTol = (double)real_input; PetscCall(PetscOptionsReal("-mat_superlu_ilu_fillfactor", "ILU_FillFactor", "None", lu->options.ILU_FillFactor, &real_input, &flg)); if (flg) lu->options.ILU_FillFactor = (double)real_input; PetscCall(PetscOptionsInt("-mat_superlu_ilu_droprull", "ILU_DropRule", "None", lu->options.ILU_DropRule, &lu->options.ILU_DropRule, NULL)); PetscCall(PetscOptionsInt("-mat_superlu_ilu_norm", "ILU_Norm", "None", lu->options.ILU_Norm, &indx, &flg)); if (flg) lu->options.ILU_Norm = (norm_t)indx; PetscCall(PetscOptionsInt("-mat_superlu_ilu_milu", "ILU_MILU", "None", lu->options.ILU_MILU, &indx, &flg)); if (flg) lu->options.ILU_MILU = (milu_t)indx; PetscOptionsEnd(); lu->flg = DIFFERENT_NONZERO_PATTERN; lu->CleanUpSuperLU = PETSC_TRUE; F->ops->lufactornumeric = MatLUFactorNumeric_SuperLU; /* if we are here, the nonzero pattern has changed unless the user explicitly called MatLUFactorSymbolic */ PetscCall(MatDestroy(&lu->A_dup)); if (lu->needconversion) PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &lu->A_dup)); if (lu->options.Equil == YES && !lu->A_dup) { /* superlu overwrites input matrix and rhs when Equil is used, thus create A_dup to keep user's A unchanged */ PetscCall(MatDuplicate_SeqAIJ(A, MAT_COPY_VALUES, &lu->A_dup)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatSuperluSetILUDropTol_SuperLU(Mat F, PetscReal dtol) { Mat_SuperLU *lu = (Mat_SuperLU *)F->data; PetscFunctionBegin; lu->options.ILU_DropTol = dtol; PetscFunctionReturn(PETSC_SUCCESS); } /*@ MatSuperluSetILUDropTol - Set SuperLU ILU drop tolerance Logically Collective Input Parameters: + F - the factored matrix obtained by calling `MatGetFactor()` - dtol - drop tolerance Options Database Key: . -mat_superlu_ilu_droptol - the drop tolerance Level: beginner .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MATSOLVERSUPERLU` @*/ PetscErrorCode MatSuperluSetILUDropTol(Mat F, PetscReal dtol) { PetscFunctionBegin; PetscValidHeaderSpecific(F, MAT_CLASSID, 1); PetscValidLogicalCollectiveReal(F, dtol, 2); PetscTryMethod(F, "MatSuperluSetILUDropTol_C", (Mat, PetscReal), (F, dtol)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatFactorGetSolverType_seqaij_superlu(Mat A, MatSolverType *type) { PetscFunctionBegin; *type = MATSOLVERSUPERLU; PetscFunctionReturn(PETSC_SUCCESS); } /*MC MATSOLVERSUPERLU = "superlu" - A solver package providing solvers LU and ILU for sequential matrices via the external package SuperLU Use `./configure --download-superlu` to have PETSc installed with SuperLU Use `-pc_type lu` `-pc_factor_mat_solver_type superlu` to use this direct solver Options Database Keys: + -mat_superlu_equil - Equil (None) . -mat_superlu_colperm - (choose one of) `NATURAL`, `MMD_ATA MMD_AT_PLUS_A`, `COLAMD` . -mat_superlu_iterrefine - (choose one of) `NOREFINE`, `SINGLE`, `DOUBLE`, `EXTRA` . -mat_superlu_symmetricmode: - SymmetricMode (None) . -mat_superlu_diagpivotthresh <1> - DiagPivotThresh (None) . -mat_superlu_pivotgrowth - PivotGrowth (None) . -mat_superlu_conditionnumber - ConditionNumber (None) . -mat_superlu_rowperm - (choose one of) `NOROWPERM`, `LargeDiag` . -mat_superlu_replacetinypivot - ReplaceTinyPivot (None) . -mat_superlu_printstat - PrintStat (None) . -mat_superlu_lwork <0> - size of work array in bytes used by factorization (None) . -mat_superlu_ilu_droptol <0> - ILU_DropTol (None) . -mat_superlu_ilu_filltol <0> - ILU_FillTol (None) . -mat_superlu_ilu_fillfactor <0> - ILU_FillFactor (None) . -mat_superlu_ilu_droprull <0> - ILU_DropRule (None) . -mat_superlu_ilu_norm <0> - ILU_Norm (None) - -mat_superlu_ilu_milu <0> - ILU_MILU (None) Level: beginner Notes: Do not confuse this with `MATSOLVERSUPERLU_DIST` which is for parallel sparse solves Cannot use ordering provided by PETSc, provides its own. .seealso: [](ch_matrices), `Mat`, `PCLU`, `PCILU`, `MATSOLVERSUPERLU_DIST`, `MATSOLVERMUMPS`, `PCFactorSetMatSolverType()`, `MatSolverType` M*/ static PetscErrorCode MatGetFactor_seqaij_superlu(Mat A, MatFactorType ftype, Mat *F) { Mat B; Mat_SuperLU *lu; PetscInt m = A->rmap->n, n = A->cmap->n; PetscFunctionBegin; PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE)); PetscCall(PetscStrallocpy("superlu", &((PetscObject)B)->type_name)); PetscCall(MatSetUp(B)); B->trivialsymbolic = PETSC_TRUE; PetscCheck(ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU, PETSC_COMM_SELF, PETSC_ERR_SUP, "Factor type not supported"); B->ops->lufactorsymbolic = MatLUFactorSymbolic_SuperLU; B->ops->ilufactorsymbolic = MatLUFactorSymbolic_SuperLU; PetscCall(PetscFree(B->solvertype)); PetscCall(PetscStrallocpy(MATSOLVERSUPERLU, &B->solvertype)); B->ops->getinfo = MatGetInfo_External; B->ops->destroy = MatDestroy_SuperLU; B->ops->view = MatView_SuperLU; B->factortype = ftype; B->assembled = PETSC_TRUE; /* required by -ksp_view */ B->preallocated = PETSC_TRUE; PetscCall(PetscNew(&lu)); if (ftype == MAT_FACTOR_LU) { set_default_options(&lu->options); /* Comments from SuperLU_4.0/SRC/dgssvx.c: "Whether or not the system will be equilibrated depends on the scaling of the matrix A, but if equilibration is used, A is overwritten by diag(R)*A*diag(C) and B by diag(R)*B (if options->Trans=NOTRANS) or diag(C)*B (if options->Trans = TRANS or CONJ)." We set 'options.Equil = NO' as default because additional space is needed for it. */ lu->options.Equil = NO; } else if (ftype == MAT_FACTOR_ILU) { /* Set the default input options of ilu: */ PetscStackCallExternalVoid("SuperLU:ilu_set_default_options", ilu_set_default_options(&lu->options)); } lu->options.PrintStat = NO; /* Initialize the statistics variables. */ PetscStackCallExternalVoid("SuperLU:StatInit", StatInit(&lu->stat)); lu->lwork = 0; /* allocate space internally by system malloc */ /* Allocate spaces (notice sizes are for the transpose) */ PetscCall(PetscMalloc1(m, &lu->etree)); PetscCall(PetscMalloc1(n, &lu->perm_r)); PetscCall(PetscMalloc1(m, &lu->perm_c)); PetscCall(PetscMalloc1(n, &lu->R)); PetscCall(PetscMalloc1(m, &lu->C)); /* create rhs and solution x without allocate space for .Store */ #if defined(PETSC_USE_COMPLEX) #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:cCreate_Dense_Matrix(", cCreate_Dense_Matrix(&lu->B, m, 1, NULL, m, SLU_DN, SLU_C, SLU_GE)); PetscStackCallExternalVoid("SuperLU:cCreate_Dense_Matrix(", cCreate_Dense_Matrix(&lu->X, m, 1, NULL, m, SLU_DN, SLU_C, SLU_GE)); #else PetscStackCallExternalVoid("SuperLU:zCreate_Dense_Matrix", zCreate_Dense_Matrix(&lu->B, m, 1, NULL, m, SLU_DN, SLU_Z, SLU_GE)); PetscStackCallExternalVoid("SuperLU:zCreate_Dense_Matrix", zCreate_Dense_Matrix(&lu->X, m, 1, NULL, m, SLU_DN, SLU_Z, SLU_GE)); #endif #else #if defined(PETSC_USE_REAL_SINGLE) PetscStackCallExternalVoid("SuperLU:sCreate_Dense_Matrix", sCreate_Dense_Matrix(&lu->B, m, 1, NULL, m, SLU_DN, SLU_S, SLU_GE)); PetscStackCallExternalVoid("SuperLU:sCreate_Dense_Matrix", sCreate_Dense_Matrix(&lu->X, m, 1, NULL, m, SLU_DN, SLU_S, SLU_GE)); #else PetscStackCallExternalVoid("SuperLU:dCreate_Dense_Matrix", dCreate_Dense_Matrix(&lu->B, m, 1, NULL, m, SLU_DN, SLU_D, SLU_GE)); PetscStackCallExternalVoid("SuperLU:dCreate_Dense_Matrix", dCreate_Dense_Matrix(&lu->X, m, 1, NULL, m, SLU_DN, SLU_D, SLU_GE)); #endif #endif PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatFactorGetSolverType_C", MatFactorGetSolverType_seqaij_superlu)); PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSuperluSetILUDropTol_C", MatSuperluSetILUDropTol_SuperLU)); B->data = lu; *F = B; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode MatGetFactor_seqsell_superlu(Mat A, MatFactorType ftype, Mat *F) { Mat_SuperLU *lu; PetscFunctionBegin; PetscCall(MatGetFactor_seqaij_superlu(A, ftype, F)); lu = (Mat_SuperLU *)((*F)->data); lu->needconversion = PETSC_TRUE; PetscFunctionReturn(PETSC_SUCCESS); } PETSC_INTERN PetscErrorCode MatSolverTypeRegister_SuperLU(void) { PetscFunctionBegin; PetscCall(MatSolverTypeRegister(MATSOLVERSUPERLU, MATSEQAIJ, MAT_FACTOR_LU, MatGetFactor_seqaij_superlu)); PetscCall(MatSolverTypeRegister(MATSOLVERSUPERLU, MATSEQAIJ, MAT_FACTOR_ILU, MatGetFactor_seqaij_superlu)); PetscCall(MatSolverTypeRegister(MATSOLVERSUPERLU, MATSEQSELL, MAT_FACTOR_LU, MatGetFactor_seqsell_superlu)); PetscCall(MatSolverTypeRegister(MATSOLVERSUPERLU, MATSEQSELL, MAT_FACTOR_ILU, MatGetFactor_seqsell_superlu)); PetscFunctionReturn(PETSC_SUCCESS); }