/* Provides an interface to the SuperLU 3.0 sparse solver */ #include "src/mat/impls/aij/seq/aij.h" EXTERN_C_BEGIN #if defined(PETSC_USE_COMPLEX) #include "zsp_defs.h" #else #include "dsp_defs.h" #endif #include "util.h" EXTERN_C_END typedef struct { SuperMatrix A,L,U,B,X; superlu_options_t options; int *perm_c; /* column permutation vector */ int *perm_r; /* row permutations from partial pivoting */ int *etree; double *R, *C; char equed[1]; int lwork; void *work; double rpg, rcond; mem_usage_t mem_usage; MatStructure flg; /* A few function pointers for inheritance */ PetscErrorCode (*MatDuplicate)(Mat,MatDuplicateOption,Mat*); PetscErrorCode (*MatView)(Mat,PetscViewer); PetscErrorCode (*MatAssemblyEnd)(Mat,MatAssemblyType); PetscErrorCode (*MatLUFactorSymbolic)(Mat,IS,IS,MatFactorInfo*,Mat*); PetscErrorCode (*MatDestroy)(Mat); /* Flag to clean up (non-global) SuperLU objects during Destroy */ PetscTruth CleanUpSuperLU; } Mat_SuperLU; EXTERN PetscErrorCode MatFactorInfo_SuperLU(Mat,PetscViewer); EXTERN PetscErrorCode MatLUFactorSymbolic_SuperLU(Mat,IS,IS,MatFactorInfo*,Mat*); EXTERN_C_BEGIN EXTERN PetscErrorCode MatConvert_SuperLU_SeqAIJ(Mat,const MatType,Mat*); EXTERN PetscErrorCode MatConvert_SeqAIJ_SuperLU(Mat,const MatType,Mat*); EXTERN_C_END #undef __FUNCT__ #define __FUNCT__ "MatDestroy_SuperLU" PetscErrorCode MatDestroy_SuperLU(Mat A) { PetscErrorCode ierr; Mat_SuperLU *lu = (Mat_SuperLU*)A->spptr; PetscFunctionBegin; if (lu->CleanUpSuperLU) { /* Free the SuperLU datastructures */ Destroy_SuperMatrix_Store(&lu->A); Destroy_SuperMatrix_Store(&lu->B); Destroy_SuperMatrix_Store(&lu->X); ierr = PetscFree(lu->etree);CHKERRQ(ierr); ierr = PetscFree(lu->perm_r);CHKERRQ(ierr); ierr = PetscFree(lu->perm_c);CHKERRQ(ierr); ierr = PetscFree(lu->R);CHKERRQ(ierr); ierr = PetscFree(lu->C);CHKERRQ(ierr); if ( lu->lwork >= 0 ) { Destroy_SuperNode_Matrix(&lu->L); Destroy_CompCol_Matrix(&lu->U); } } ierr = MatConvert_SuperLU_SeqAIJ(A,MATSEQAIJ,&A);CHKERRQ(ierr); ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatView_SuperLU" PetscErrorCode MatView_SuperLU(Mat A,PetscViewer viewer) { PetscErrorCode ierr; PetscTruth iascii; PetscViewerFormat format; Mat_SuperLU *lu=(Mat_SuperLU*)(A->spptr); PetscFunctionBegin; ierr = (*lu->MatView)(A,viewer);CHKERRQ(ierr); ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); if (iascii) { ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { ierr = MatFactorInfo_SuperLU(A,viewer);CHKERRQ(ierr); } } PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatAssemblyEnd_SuperLU" PetscErrorCode MatAssemblyEnd_SuperLU(Mat A,MatAssemblyType mode) { PetscErrorCode ierr; Mat_SuperLU *lu=(Mat_SuperLU*)(A->spptr); PetscFunctionBegin; ierr = (*lu->MatAssemblyEnd)(A,mode);CHKERRQ(ierr); lu->MatLUFactorSymbolic = A->ops->lufactorsymbolic; A->ops->lufactorsymbolic = MatLUFactorSymbolic_SuperLU; PetscFunctionReturn(0); } /* This function was written for SuperLU 2.0 by Matthew Knepley. Not tested for SuperLU 3.0! */ #ifdef SuperLU2 #include "src/mat/impls/dense/seq/dense.h" #undef __FUNCT__ #define __FUNCT__ "MatCreateNull_SuperLU" PetscErrorCode MatCreateNull_SuperLU(Mat A,Mat *nullMat) { Mat_SuperLU *lu = (Mat_SuperLU*)A->spptr; int numRows = A->m,numCols = A->n; SCformat *Lstore; int numNullCols,size; SuperLUStat_t stat; #if defined(PETSC_USE_COMPLEX) doublecomplex *nullVals,*workVals; #else PetscScalar *nullVals,*workVals; #endif int row,newRow,col,newCol,block,b; PetscErrorCode ierr; PetscFunctionBegin; if (!A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Unfactored matrix"); numNullCols = numCols - numRows; if (numNullCols < 0) SETERRQ(PETSC_ERR_ARG_WRONG,"Function only applies to underdetermined problems"); /* Create the null matrix using MATSEQDENSE explicitly */ ierr = MatCreate(A->comm,numRows,numNullCols,numRows,numNullCols,nullMat);CHKERRQ(ierr); ierr = MatSetType(*nullMat,MATSEQDENSE);CHKERRQ(ierr); ierr = MatSeqDenseSetPreallocation(*nullMat,PETSC_NULL);CHKERRQ(ierr); if (!numNullCols) { ierr = MatAssemblyBegin(*nullMat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(*nullMat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); PetscFunctionReturn(0); } #if defined(PETSC_USE_COMPLEX) nullVals = (doublecomplex*)((Mat_SeqDense*)(*nullMat)->data)->v; #else nullVals = ((Mat_SeqDense*)(*nullMat)->data)->v; #endif /* Copy in the columns */ Lstore = (SCformat*)lu->L.Store; for(block = 0; block <= Lstore->nsuper; block++) { newRow = Lstore->sup_to_col[block]; size = Lstore->sup_to_col[block+1] - Lstore->sup_to_col[block]; for(col = Lstore->rowind_colptr[newRow]; col < Lstore->rowind_colptr[newRow+1]; col++) { newCol = Lstore->rowind[col]; if (newCol >= numRows) { for(b = 0; b < size; b++) #if defined(PETSC_USE_COMPLEX) nullVals[(newCol-numRows)*numRows+newRow+b] = ((doublecomplex*)Lstore->nzval)[Lstore->nzval_colptr[newRow+b]+col]; #else nullVals[(newCol-numRows)*numRows+newRow+b] = ((double*)Lstore->nzval)[Lstore->nzval_colptr[newRow+b]+col]; #endif } } } /* Permute rhs to form P^T_c B */ ierr = PetscMalloc(numRows*sizeof(double),&workVals);CHKERRQ(ierr); for(b = 0; b < numNullCols; b++) { for(row = 0; row < numRows; row++) workVals[lu->perm_c[row]] = nullVals[b*numRows+row]; for(row = 0; row < numRows; row++) nullVals[b*numRows+row] = workVals[row]; } /* Backward solve the upper triangle A x = b */ for(b = 0; b < numNullCols; b++) { #if defined(PETSC_USE_COMPLEX) sp_ztrsv("L","T","U",&lu->L,&lu->U,&nullVals[b*numRows],&stat,&ierr); #else sp_dtrsv("L","T","U",&lu->L,&lu->U,&nullVals[b*numRows],&stat,&ierr); #endif if (ierr < 0) SETERRQ1(PETSC_ERR_ARG_WRONG,"The argument %d was invalid",-ierr); } ierr = PetscFree(workVals);CHKERRQ(ierr); ierr = MatAssemblyBegin(*nullMat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(*nullMat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); PetscFunctionReturn(0); } #endif #undef __FUNCT__ #define __FUNCT__ "MatSolve_SuperLU" PetscErrorCode MatSolve_SuperLU(Mat A,Vec b,Vec x) { Mat_SuperLU *lu = (Mat_SuperLU*)A->spptr; PetscScalar *barray,*xarray; PetscErrorCode ierr; int info,i; SuperLUStat_t stat; double ferr,berr; PetscFunctionBegin; if ( lu->lwork == -1 ) { PetscFunctionReturn(0); } lu->B.ncol = 1; /* Set the number of right-hand side */ ierr = VecGetArray(b,&barray);CHKERRQ(ierr); ierr = VecGetArray(x,&xarray);CHKERRQ(ierr); #if defined(PETSC_USE_COMPLEX) ((DNformat*)lu->B.Store)->nzval = (doublecomplex*)barray; ((DNformat*)lu->X.Store)->nzval = (doublecomplex*)xarray; #else ((DNformat*)lu->B.Store)->nzval = barray; ((DNformat*)lu->X.Store)->nzval = xarray; #endif /* Initialize the statistics variables. */ StatInit(&stat); lu->options.Fact = FACTORED; /* Indicate the factored form of A is supplied. */ lu->options.Trans = TRANS; #if defined(PETSC_USE_COMPLEX) zgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->mem_usage, &stat, &info); #else dgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->mem_usage, &stat, &info); #endif ierr = VecRestoreArray(b,&barray);CHKERRQ(ierr); ierr = VecRestoreArray(x,&xarray);CHKERRQ(ierr); if ( !info || info == lu->A.ncol+1 ) { if ( lu->options.IterRefine ) { ierr = PetscPrintf(PETSC_COMM_SELF,"Iterative Refinement:\n"); ierr = PetscPrintf(PETSC_COMM_SELF," %8s%8s%16s%16s\n", "rhs", "Steps", "FERR", "BERR"); for (i = 0; i < 1; ++i) ierr = PetscPrintf(PETSC_COMM_SELF," %8d%8d%16e%16e\n", i+1, stat.RefineSteps, ferr, berr); } } else if ( info > 0 ){ if ( lu->lwork == -1 ) { ierr = PetscPrintf(PETSC_COMM_SELF," ** Estimated memory: %d bytes\n", info - lu->A.ncol); } else { ierr = PetscPrintf(PETSC_COMM_SELF," Warning: gssvx() returns info %d\n",info); } } else if (info < 0){ SETERRQ2(1, "info = %d, the %d-th argument in gssvx() had an illegal value", info,-info); } if ( lu->options.PrintStat ) { ierr = PetscPrintf(PETSC_COMM_SELF,"MatSolve__SuperLU():\n"); StatPrint(&stat); } StatFree(&stat); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatLUFactorNumeric_SuperLU" PetscErrorCode MatLUFactorNumeric_SuperLU(Mat A,Mat *F) { Mat_SeqAIJ *aa = (Mat_SeqAIJ*)(A)->data; Mat_SuperLU *lu = (Mat_SuperLU*)(*F)->spptr; PetscErrorCode ierr; int info; SuperLUStat_t stat; double ferr, berr; NCformat *Ustore; SCformat *Lstore; PetscFunctionBegin; if (lu->flg == SAME_NONZERO_PATTERN){ /* successing numerical factorization */ lu->options.Fact = SamePattern; /* Ref: ~SuperLU_3.0/EXAMPLE/dlinsolx2.c */ Destroy_SuperMatrix_Store(&lu->A); if ( lu->lwork >= 0 ) { Destroy_SuperNode_Matrix(&lu->L); Destroy_CompCol_Matrix(&lu->U); lu->options.Fact = SamePattern; } } /* Create the SuperMatrix for lu->A=A^T: Since SuperLU likes column-oriented matrices,we pass it the transpose, and then solve A^T X = B in MatSolve(). */ #if defined(PETSC_USE_COMPLEX) zCreate_CompCol_Matrix(&lu->A,A->n,A->m,aa->nz,(doublecomplex*)aa->a,aa->j,aa->i, SLU_NC,SLU_Z,SLU_GE); #else dCreate_CompCol_Matrix(&lu->A,A->n,A->m,aa->nz,aa->a,aa->j,aa->i, SLU_NC,SLU_D,SLU_GE); #endif /* Initialize the statistics variables. */ StatInit(&stat); /* Numerical factorization */ lu->B.ncol = 0; /* Indicate not to solve the system */ #if defined(PETSC_USE_COMPLEX) zgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->mem_usage, &stat, &info); #else dgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, &lu->mem_usage, &stat, &info); #endif if ( !info || info == lu->A.ncol+1 ) { if ( lu->options.PivotGrowth ) ierr = PetscPrintf(PETSC_COMM_SELF," Recip. pivot growth = %e\n", lu->rpg); if ( lu->options.ConditionNumber ) ierr = PetscPrintf(PETSC_COMM_SELF," Recip. condition number = %e\n", lu->rcond); } else if ( info > 0 ){ if ( lu->lwork == -1 ) { ierr = PetscPrintf(PETSC_COMM_SELF," ** Estimated memory: %d bytes\n", info - lu->A.ncol); } else { ierr = PetscPrintf(PETSC_COMM_SELF," Warning: gssvx() returns info %d\n",info); } } else { /* info < 0 */ SETERRQ2(1, "info = %d, the %d-th argument in gssvx() had an illegal value", info,-info); } if ( lu->options.PrintStat ) { ierr = PetscPrintf(PETSC_COMM_SELF,"MatLUFactorNumeric_SuperLU():\n"); StatPrint(&stat); Lstore = (SCformat *) lu->L.Store; Ustore = (NCformat *) lu->U.Store; ierr = PetscPrintf(PETSC_COMM_SELF," No of nonzeros in factor L = %d\n", Lstore->nnz); ierr = PetscPrintf(PETSC_COMM_SELF," No of nonzeros in factor U = %d\n", Ustore->nnz); ierr = PetscPrintf(PETSC_COMM_SELF," No of nonzeros in L+U = %d\n", Lstore->nnz + Ustore->nnz - lu->A.ncol); ierr = PetscPrintf(PETSC_COMM_SELF," L\\U MB %.3f\ttotal MB needed %.3f\texpansions %d\n", lu->mem_usage.for_lu/1e6, lu->mem_usage.total_needed/1e6, lu->mem_usage.expansions); } StatFree(&stat); lu->flg = SAME_NONZERO_PATTERN; PetscFunctionReturn(0); } /* Note the r permutation is ignored */ #undef __FUNCT__ #define __FUNCT__ "MatLUFactorSymbolic_SuperLU" PetscErrorCode MatLUFactorSymbolic_SuperLU(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F) { Mat B; Mat_SuperLU *lu; PetscErrorCode ierr; int m=A->m,n=A->n,indx; PetscTruth flg; const char *colperm[]={"NATURAL","MMD_ATA","MMD_AT_PLUS_A","COLAMD"}; /* MY_PERMC - not supported by the petsc interface yet */ const char *iterrefine[]={"NOREFINE", "SINGLE", "DOUBLE", "EXTRA"}; const char *rowperm[]={"NOROWPERM", "LargeDiag"}; /* MY_PERMC - not supported by the petsc interface yet */ PetscFunctionBegin; ierr = MatCreate(A->comm,A->m,A->n,PETSC_DETERMINE,PETSC_DETERMINE,&B);CHKERRQ(ierr); ierr = MatSetType(B,A->type_name);CHKERRQ(ierr); ierr = MatSeqAIJSetPreallocation(B,0,PETSC_NULL);CHKERRQ(ierr); B->ops->lufactornumeric = MatLUFactorNumeric_SuperLU; B->ops->solve = MatSolve_SuperLU; B->factor = FACTOR_LU; B->assembled = PETSC_TRUE; /* required by -ksp_view */ lu = (Mat_SuperLU*)(B->spptr); /* Set SuperLU options */ /* the default values for options argument: options.Fact = DOFACT; options.Equil = YES; options.ColPerm = COLAMD; options.DiagPivotThresh = 1.0; options.Trans = NOTRANS; options.IterRefine = NOREFINE; options.SymmetricMode = NO; options.PivotGrowth = NO; options.ConditionNumber = NO; options.PrintStat = YES; */ set_default_options(&lu->options); /* equilibration causes error in solve(), thus not supported here. See dgssvx.c for possible reason. */ lu->options.Equil = NO; lu->options.PrintStat = NO; lu->lwork = 0; /* allocate space internally by system malloc */ ierr = PetscOptionsBegin(A->comm,A->prefix,"SuperLU Options","Mat");CHKERRQ(ierr); /* ierr = PetscOptionsLogical("-mat_superlu_equil","Equil","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); if (flg) lu->options.Equil = YES; -- not supported by the interface !!! */ ierr = PetscOptionsEList("-mat_superlu_colperm","ColPerm","None",colperm,4,colperm[3],&indx,&flg);CHKERRQ(ierr); if (flg) {lu->options.ColPerm = (colperm_t)indx;} ierr = PetscOptionsEList("-mat_superlu_iterrefine","IterRefine","None",iterrefine,4,iterrefine[0],&indx,&flg);CHKERRQ(ierr); if (flg) { lu->options.IterRefine = (IterRefine_t)indx;} ierr = PetscOptionsLogical("-mat_superlu_symmetricmode","SymmetricMode","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); if (flg) lu->options.SymmetricMode = YES; ierr = PetscOptionsReal("-mat_superlu_diagpivotthresh","DiagPivotThresh","None",lu->options.DiagPivotThresh,&lu->options.DiagPivotThresh,PETSC_NULL);CHKERRQ(ierr); ierr = PetscOptionsLogical("-mat_superlu_pivotgrowth","PivotGrowth","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); if (flg) lu->options.PivotGrowth = YES; ierr = PetscOptionsLogical("-mat_superlu_conditionnumber","ConditionNumber","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); if (flg) lu->options.ConditionNumber = YES; ierr = PetscOptionsEList("-mat_superlu_rowperm","rowperm","None",rowperm,2,rowperm[0],&indx,&flg);CHKERRQ(ierr); if (flg) {lu->options.RowPerm = (rowperm_t)indx;} ierr = PetscOptionsLogical("-mat_superlu_replacetinypivot","ReplaceTinyPivot","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); if (flg) lu->options.ReplaceTinyPivot = YES; ierr = PetscOptionsLogical("-mat_superlu_printstat","PrintStat","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); if (flg) lu->options.PrintStat = YES; ierr = PetscOptionsInt("-mat_superlu_lwork","size of work array in bytes used by factorization","None",lu->lwork,&lu->lwork,PETSC_NULL);CHKERRQ(ierr); if (lu->lwork > 0 ){ ierr = PetscMalloc(lu->lwork,&lu->work);CHKERRQ(ierr); } else if (lu->lwork != 0 && lu->lwork != -1){ ierr = PetscPrintf(PETSC_COMM_SELF," Warning: lwork %d is not supported by SUPERLU. The default lwork=0 is used.\n",lu->lwork); lu->lwork = 0; } PetscOptionsEnd(); #ifdef SUPERLU2 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatCreateNull","MatCreateNull_SuperLU", (void(*)(void))MatCreateNull_SuperLU);CHKERRQ(ierr); #endif /* Allocate spaces (notice sizes are for the transpose) */ ierr = PetscMalloc(m*sizeof(int),&lu->etree);CHKERRQ(ierr); ierr = PetscMalloc(n*sizeof(int),&lu->perm_r);CHKERRQ(ierr); ierr = PetscMalloc(m*sizeof(int),&lu->perm_c);CHKERRQ(ierr); ierr = PetscMalloc(n*sizeof(int),&lu->R);CHKERRQ(ierr); ierr = PetscMalloc(m*sizeof(int),&lu->C);CHKERRQ(ierr); /* create rhs and solution x without allocate space for .Store */ #if defined(PETSC_USE_COMPLEX) zCreate_Dense_Matrix(&lu->B, m, 1, PETSC_NULL, m, SLU_DN, SLU_Z, SLU_GE); zCreate_Dense_Matrix(&lu->X, m, 1, PETSC_NULL, m, SLU_DN, SLU_Z, SLU_GE); #else dCreate_Dense_Matrix(&lu->B, m, 1, PETSC_NULL, m, SLU_DN, SLU_D, SLU_GE); dCreate_Dense_Matrix(&lu->X, m, 1, PETSC_NULL, m, SLU_DN, SLU_D, SLU_GE); #endif lu->flg = DIFFERENT_NONZERO_PATTERN; lu->CleanUpSuperLU = PETSC_TRUE; *F = B; PetscLogObjectMemory(B,(A->m+A->n)*sizeof(int)+sizeof(Mat_SuperLU)); PetscFunctionReturn(0); } /* used by -ksp_view */ #undef __FUNCT__ #define __FUNCT__ "MatFactorInfo_SuperLU" PetscErrorCode MatFactorInfo_SuperLU(Mat A,PetscViewer viewer) { Mat_SuperLU *lu= (Mat_SuperLU*)A->spptr; int ierr; superlu_options_t options; PetscFunctionBegin; /* check if matrix is superlu_dist type */ if (A->ops->solve != MatSolve_SuperLU) PetscFunctionReturn(0); options = lu->options; ierr = PetscViewerASCIIPrintf(viewer,"SuperLU run parameters:\n");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," Equil: %s\n",(options.Equil != NO) ? "YES": "NO");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," ColPerm: %d\n",options.ColPerm);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," IterRefine: %d\n",options.IterRefine);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," SymmetricMode: %s\n",(options.SymmetricMode != NO) ? "YES": "NO");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," DiagPivotThresh: %g\n",options.DiagPivotThresh);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," PivotGrowth: %s\n",(options.PivotGrowth != NO) ? "YES": "NO");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," ConditionNumber: %s\n",(options.ConditionNumber != NO) ? "YES": "NO");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," RowPerm: %d\n",options.RowPerm);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," ReplaceTinyPivot: %s\n",(options.ReplaceTinyPivot != NO) ? "YES": "NO");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," PrintStat: %s\n",(options.PrintStat != NO) ? "YES": "NO");CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer," lwork: %d\n",lu->lwork);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatDuplicate_SuperLU" PetscErrorCode MatDuplicate_SuperLU(Mat A, MatDuplicateOption op, Mat *M) { int ierr; Mat_SuperLU *lu=(Mat_SuperLU *)A->spptr; PetscFunctionBegin; ierr = (*lu->MatDuplicate)(A,op,M);CHKERRQ(ierr); ierr = PetscMemcpy((*M)->spptr,lu,sizeof(Mat_SuperLU));CHKERRQ(ierr); PetscFunctionReturn(0); } EXTERN_C_BEGIN #undef __FUNCT__ #define __FUNCT__ "MatConvert_SuperLU_SeqAIJ" PetscErrorCode MatConvert_SuperLU_SeqAIJ(Mat A,const MatType type,Mat *newmat) { /* This routine is only called to convert an unfactored PETSc-SuperLU matrix */ /* to its base PETSc type, so we will ignore 'MatType type'. */ int ierr; Mat B=*newmat; Mat_SuperLU *lu=(Mat_SuperLU *)A->spptr; PetscFunctionBegin; if (B != A) { ierr = MatDuplicate(A,MAT_COPY_VALUES,&B);CHKERRQ(ierr); } /* Reset the original function pointers */ B->ops->duplicate = lu->MatDuplicate; B->ops->view = lu->MatView; B->ops->assemblyend = lu->MatAssemblyEnd; B->ops->lufactorsymbolic = lu->MatLUFactorSymbolic; B->ops->destroy = lu->MatDestroy; /* lu is only a function pointer stash unless we've factored the matrix, which we haven't! */ ierr = PetscFree(lu);CHKERRQ(ierr); ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQAIJ);CHKERRQ(ierr); *newmat = B; PetscFunctionReturn(0); } EXTERN_C_END EXTERN_C_BEGIN #undef __FUNCT__ #define __FUNCT__ "MatConvert_SeqAIJ_SuperLU" PetscErrorCode MatConvert_SeqAIJ_SuperLU(Mat A,const MatType type,Mat *newmat) { /* This routine is only called to convert to MATSUPERLU */ /* from MATSEQAIJ, so we will ignore 'MatType type'. */ int ierr; Mat B=*newmat; Mat_SuperLU *lu; PetscFunctionBegin; if (B != A) { ierr = MatDuplicate(A,MAT_COPY_VALUES,&B);CHKERRQ(ierr); } ierr = PetscNew(Mat_SuperLU,&lu);CHKERRQ(ierr); lu->MatDuplicate = A->ops->duplicate; lu->MatView = A->ops->view; lu->MatAssemblyEnd = A->ops->assemblyend; lu->MatLUFactorSymbolic = A->ops->lufactorsymbolic; lu->MatDestroy = A->ops->destroy; lu->CleanUpSuperLU = PETSC_FALSE; B->spptr = (void*)lu; B->ops->duplicate = MatDuplicate_SuperLU; B->ops->view = MatView_SuperLU; B->ops->assemblyend = MatAssemblyEnd_SuperLU; B->ops->lufactorsymbolic = MatLUFactorSymbolic_SuperLU; B->ops->choleskyfactorsymbolic = 0; B->ops->destroy = MatDestroy_SuperLU; ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqaij_superlu_C", "MatConvert_SeqAIJ_SuperLU",MatConvert_SeqAIJ_SuperLU);CHKERRQ(ierr); ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_superlu_seqaij_C", "MatConvert_SuperLU_SeqAIJ",MatConvert_SuperLU_SeqAIJ);CHKERRQ(ierr); PetscLogInfo(0,"Using SuperLU for SeqAIJ LU factorization and solves."); ierr = PetscObjectChangeTypeName((PetscObject)B,MATSUPERLU);CHKERRQ(ierr); *newmat = B; PetscFunctionReturn(0); } EXTERN_C_END /*MC MATSUPERLU - MATSUPERLU = "superlu" - A matrix type providing direct solvers (LU) for sequential matrices via the external package SuperLU. If SuperLU is installed (see the manual for instructions on how to declare the existence of external packages), a matrix type can be constructed which invokes SuperLU solvers. After calling MatCreate(...,A), simply call MatSetType(A,MATSUPERLU). This matrix type is only supported for double precision real. This matrix inherits from MATSEQAIJ. As a result, MatSeqAIJSetPreallocation is supported for this matrix type. One can also call MatConvert for an inplace conversion to or from the MATSEQAIJ type without data copy. Options Database Keys: + -mat_type superlu - sets the matrix type to "superlu" during a call to MatSetFromOptions() - -mat_superlu_ordering <0,1,2,3> - 0: natural ordering, 1: MMD applied to A'*A, 2: MMD applied to A'+A, 3: COLAMD, approximate minimum degree column ordering Level: beginner .seealso: PCLU M*/ EXTERN_C_BEGIN #undef __FUNCT__ #define __FUNCT__ "MatCreate_SuperLU" PetscErrorCode MatCreate_SuperLU(Mat A) { PetscErrorCode ierr; PetscFunctionBegin; /* Change type name before calling MatSetType to force proper construction of SeqAIJ and SUPERLU types */ ierr = PetscObjectChangeTypeName((PetscObject)A,MATSUPERLU);CHKERRQ(ierr); ierr = MatSetType(A,MATSEQAIJ);CHKERRQ(ierr); ierr = MatConvert_SeqAIJ_SuperLU(A,MATSUPERLU,&A);CHKERRQ(ierr); PetscFunctionReturn(0); } EXTERN_C_END