#ifdef PETSC_RCS_HEADER static char vcid[] = "$Id: mmbaij.c,v 1.16 1997/11/03 04:46:15 bsmith Exp balay $"; #endif /* Support for the parallel BAIJ matrix vector multiply */ #include "src/mat/impls/baij/mpi/mpibaij.h" #include "src/vec/vecimpl.h" #undef __FUNC__ #define __FUNC__ "MatSetUpMultiply_MPIBAIJ" int MatSetUpMultiply_MPIBAIJ(Mat mat) { Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; Mat_SeqBAIJ *B = (Mat_SeqBAIJ *) (baij->B->data); int Nbs = baij->Nbs,i,j,*indices,*aj = B->j,ierr,ec = 0,*garray; int col,bs = baij->bs,*tmp,*stmp; IS from,to; Vec gvec; PetscFunctionBegin; /* For the first stab we make an array as long as the number of columns */ /* mark those columns that are in baij->B */ indices = (int *) PetscMalloc( (Nbs+1)*sizeof(int) ); CHKPTRQ(indices); PetscMemzero(indices,Nbs*sizeof(int)); for ( i=0; imbs; i++ ) { for ( j=0; jilen[i]; j++ ) { if (!indices[aj[B->i[i] + j]]) ec++; indices[aj[B->i[i] + j] ] = 1; } } /* form array of columns we need */ garray = (int *) PetscMalloc( (ec+1)*sizeof(int) ); CHKPTRQ(garray); tmp = (int *) PetscMalloc( (ec*bs+1)*sizeof(int) ); CHKPTRQ(tmp) ec = 0; for ( i=0; imbs; i++ ) { for ( j=0; jilen[i]; j++ ) { aj[B->i[i] + j] = indices[aj[B->i[i] + j]]; } } B->nbs = ec; B->n = ec*B->bs; PetscFree(indices); for ( i=0,col=0; ilvec); CHKERRQ(ierr); /* create two temporary index sets for building scatter-gather */ /* ierr = ISCreateGeneral(PETSC_COMM_SELF,ec*bs,tmp,&from); CHKERRQ(ierr); */ for ( i=0,col=0; icomm,baij->n,baij->N,&gvec); CHKERRQ(ierr); /* gnerate the scatter context */ ierr = VecScatterCreate(gvec,from,baij->lvec,to,&baij->Mvctx);CHKERRQ(ierr); /* Post the receives for the first matrix vector product. We sync-chronize after this on the chance that the user immediately calls MatMult() after assemblying the matrix. */ ierr = VecScatterPostRecvs(gvec,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); ierr = MPI_Barrier(mat->comm);CHKERRQ(ierr); PLogObjectParent(mat,baij->Mvctx); PLogObjectParent(mat,baij->lvec); PLogObjectParent(mat,from); PLogObjectParent(mat,to); baij->garray = garray; PLogObjectMemory(mat,(ec+1)*sizeof(int)); ierr = ISDestroy(from); CHKERRQ(ierr); ierr = ISDestroy(to); CHKERRQ(ierr); ierr = VecDestroy(gvec); PetscFree(tmp); PetscFunctionReturn(0); } /* Takes the local part of an already assembled MPIBAIJ matrix and disassembles it. This is to allow new nonzeros into the matrix that require more communication in the matrix vector multiply. Thus certain data-structures must be rebuilt. Kind of slow! But that's what application programmers get when they are sloppy. */ #undef __FUNC__ #define __FUNC__ "DisAssemble_MPIBAIJ" int DisAssemble_MPIBAIJ(Mat A) { Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; Mat B = baij->B,Bnew; Mat_SeqBAIJ *Bbaij = (Mat_SeqBAIJ*)B->data; int ierr,i,j,mbs=Bbaij->mbs,n = baij->N,col,*garray=baij->garray; int k,bs=baij->bs,bs2=baij->bs2,*rvals,*nz,ec,m=Bbaij->m; Scalar *a=Bbaij->a; PetscFunctionBegin; /* free stuff related to matrix-vec multiply */ ierr = VecGetSize(baij->lvec,&ec); /* needed for PLogObjectMemory below */ ierr = VecDestroy(baij->lvec); CHKERRQ(ierr); baij->lvec = 0; ierr = VecScatterDestroy(baij->Mvctx); CHKERRQ(ierr); baij->Mvctx = 0; if (baij->colmap) { PetscFree(baij->colmap); baij->colmap = 0; PLogObjectMemory(A,-Bbaij->nbs*sizeof(int)); } /* make sure that B is assembled so we can access its values */ ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); /* invent new B and copy stuff over */ nz = (int *) PetscMalloc( mbs*sizeof(int) ); CHKPTRQ(nz); for ( i=0; ii[i+1]-Bbaij->i[i]; } ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,baij->bs,m,n,0,nz,&Bnew); CHKERRQ(ierr); PetscFree(nz); rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); for ( i=0; ii[i]; ji[i+1]; j++ ) { col = garray[Bbaij->j[j]]*bs; for (k=0; kgarray); baij->garray = 0; PetscFree(rvals); PLogObjectMemory(A,-ec*sizeof(int)); ierr = MatDestroy(B); CHKERRQ(ierr); PLogObjectParent(A,Bnew); baij->B = Bnew; A->was_assembled = PETSC_FALSE; PetscFunctionReturn(0); }