/* Factorization code for BAIJ format. */ #include <../src/mat/impls/baij/seq/baij.h> #include <../src/mat/blockinvert.h> #include #include <../src/mat/utils/freespace.h> #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_1_NaturalOrdering" PetscErrorCode MatSolveTranspose_SeqBAIJ_1_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; PetscErrorCode ierr; const PetscInt *adiag = a->diag,*ai = a->i,*aj = a->j,*vi; PetscInt i,n = a->mbs,j; PetscInt nz; PetscScalar *x,*tmp,s1; const MatScalar *aa = a->a,*v; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); tmp = a->solve_work; /* copy the b into temp work space according to permutation */ for (i=0; i=0; i--) { v = aa + ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; s1 = tmp[i]; for (j=0; jnz-A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_1_NaturalOrdering_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_1_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; PetscInt i,nz; const PetscInt *diag = a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; const MatScalar *aa=a->a,*v; PetscScalar s1,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ for (i=0; i=0; i--) { v = aa + diag[i] - 1; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; s1 = x[i]; while (nz--) { x[*vi--] -= (*v--)*s1; } } ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*(a->nz) - A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_2_NaturalOrdering_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_2_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; PetscInt i,nz,idx,idt,oidx; const PetscInt *diag = a->diag,*vi,n=a->mbs,*ai=a->i,*aj=a->j; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,x1,x2,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i=0; i--) { v = aa + 4*diag[i] - 4; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 2*i; s1 = x[idt]; s2 = x[1+idt]; while (nz--) { idx = 2*(*vi--); x[idx] -= v[0]*s1 + v[1]*s2; x[idx+1] -= v[2]*s1 + v[3]*s2; v -= 4; } } ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*4.0*(a->nz) - 2.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_2_NaturalOrdering" PetscErrorCode MatSolveTranspose_SeqBAIJ_2_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; PetscInt nz,idx,idt,j,i,oidx; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,x1,x2,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i-nz;j--) { oidx = bs*vi[j]; x[oidx] -= v[0]*s1 + v[1]*s2; x[oidx+1] -= v[2]*s1 + v[3]*s2; v -= bs2; } x[idx] = s1;x[1+idx] = s2; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = x[idt]; s2 = x[1+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_3_NaturalOrdering_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_3_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; PetscInt i,nz,idx,idt,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,x1,x2,x3,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i=0; i--) { v = aa + 9*diag[i] - 9; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 3*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; while (nz--) { idx = 3*(*vi--); x[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3; x[idx+1] -= v[3]*s1 + v[4]*s2 + v[5]*s3; x[idx+2] -= v[6]*s1 + v[7]*s2 + v[8]*s3; v -= 9; } } ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*9.0*(a->nz) - 3.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_3_NaturalOrdering" PetscErrorCode MatSolveTranspose_SeqBAIJ_3_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; PetscInt nz,idx,idt,j,i,oidx; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,x1,x2,x3,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i-nz;j--) { oidx = bs*vi[j]; x[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3; x[oidx+1] -= v[3]*s1 + v[4]*s2 + v[5]*s3; x[oidx+2] -= v[6]*s1 + v[7]*s2 + v[8]*s3; v -= bs2; } x[idx] = s1;x[1+idx] = s2; x[2+idx] = s3; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_4_NaturalOrdering_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_4_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,x1,x2,x3,x4,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i=0; i--) { v = aa + 16*diag[i] - 16; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 4*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt];s4 = x[3+idt]; while (nz--) { idx = 4*(*vi--); x[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4; x[idx+1] -= v[4]*s1 + v[5]*s2 + v[6]*s3 + v[7]*s4; x[idx+2] -= v[8]*s1 + v[9]*s2 + v[10]*s3 + v[11]*s4; x[idx+3] -= v[12]*s1 + v[13]*s2 + v[14]*s3 + v[15]*s4; v -= 16; } } ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*16*(a->nz) - 4.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_4_NaturalOrdering" PetscErrorCode MatSolveTranspose_SeqBAIJ_4_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; PetscInt nz,idx,idt,j,i,oidx; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,x1,x2,x3,x4,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i-nz;j--) { oidx = bs*vi[j]; x[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4; x[oidx+1] -= v[4]*s1 + v[5]*s2 + v[6]*s3 + v[7]*s4; x[oidx+2] -= v[8]*s1 + v[9]*s2 + v[10]*s3 + v[11]*s4; x[oidx+3] -= v[12]*s1 + v[13]*s2 + v[14]*s3 + v[15]*s4; v -= bs2; } x[idx] = s1;x[1+idx] = s2; x[2+idx] = s3; x[3+idx] = s4; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; s4 = x[3+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_5_NaturalOrdering_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_5_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,x1,x2,x3,x4,x5,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i=0; i--) { v = aa + 25*diag[i] - 25; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 5*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt];s4 = x[3+idt]; s5 = x[4+idt]; while (nz--) { idx = 5*(*vi--); x[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5; x[idx+1] -= v[5]*s1 + v[6]*s2 + v[7]*s3 + v[8]*s4 + v[9]*s5; x[idx+2] -= v[10]*s1 + v[11]*s2 + v[12]*s3 + v[13]*s4 + v[14]*s5; x[idx+3] -= v[15]*s1 + v[16]*s2 + v[17]*s3 + v[18]*s4 + v[19]*s5; x[idx+4] -= v[20]*s1 + v[21]*s2 + v[22]*s3 + v[23]*s4 + v[24]*s5; v -= 25; } } ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*25*(a->nz) - 5.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_5_NaturalOrdering" PetscErrorCode MatSolveTranspose_SeqBAIJ_5_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; PetscInt nz,idx,idt,j,i,oidx; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,x1,x2,x3,x4,x5,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i-nz;j--) { oidx = bs*vi[j]; x[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5; x[oidx+1] -= v[5]*s1 + v[6]*s2 + v[7]*s3 + v[8]*s4 + v[9]*s5; x[oidx+2] -= v[10]*s1 + v[11]*s2 + v[12]*s3 + v[13]*s4 + v[14]*s5; x[oidx+3] -= v[15]*s1 + v[16]*s2 + v[17]*s3 + v[18]*s4 + v[19]*s5; x[oidx+4] -= v[20]*s1 + v[21]*s2 + v[22]*s3 + v[23]*s4 + v[24]*s5; v -= bs2; } x[idx] = s1;x[1+idx] = s2; x[2+idx] = s3; x[3+idx] = s4; x[4+idx] = s5; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; s4 = x[3+idt]; s5 = x[4+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_6_NaturalOrdering_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_6_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,x1,x2,x3,x4,x5,x6,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i=0; i--) { v = aa + 36*diag[i] - 36; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 6*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt];s4 = x[3+idt]; s5 = x[4+idt]; s6 = x[5+idt]; while (nz--) { idx = 6*(*vi--); x[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5 + v[5]*s6; x[idx+1] -= v[6]*s1 + v[7]*s2 + v[8]*s3 + v[9]*s4 + v[10]*s5 + v[11]*s6; x[idx+2] -= v[12]*s1 + v[13]*s2 + v[14]*s3 + v[15]*s4 + v[16]*s5 + v[17]*s6; x[idx+3] -= v[18]*s1 + v[19]*s2 + v[20]*s3 + v[21]*s4 + v[22]*s5 + v[23]*s6; x[idx+4] -= v[24]*s1 + v[25]*s2 + v[26]*s3 + v[27]*s4 + v[28]*s5 + v[29]*s6; x[idx+5] -= v[30]*s1 + v[31]*s2 + v[32]*s3 + v[33]*s4 + v[34]*s5 + v[35]*s6; v -= 36; } } ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*36*(a->nz) - 6.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_6_NaturalOrdering" PetscErrorCode MatSolveTranspose_SeqBAIJ_6_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; PetscInt nz,idx,idt,j,i,oidx; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,x1,x2,x3,x4,x5,x6,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i-nz;j--) { oidx = bs*vi[j]; x[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5 + v[5]*s6; x[oidx+1] -= v[6]*s1 + v[7]*s2 + v[8]*s3 + v[9]*s4 + v[10]*s5 + v[11]*s6; x[oidx+2] -= v[12]*s1 + v[13]*s2 + v[14]*s3 + v[15]*s4 + v[16]*s5 + v[17]*s6; x[oidx+3] -= v[18]*s1 + v[19]*s2 + v[20]*s3 + v[21]*s4 + v[22]*s5 + v[23]*s6; x[oidx+4] -= v[24]*s1 + v[25]*s2 + v[26]*s3 + v[27]*s4 + v[28]*s5 + v[29]*s6; x[oidx+5] -= v[30]*s1 + v[31]*s2 + v[32]*s3 + v[33]*s4 + v[34]*s5 + v[35]*s6; v -= bs2; } x[idx] = s1;x[1+idx] = s2; x[2+idx] = s3; x[3+idx] = s4; x[4+idx] = s5; x[5+idx] = s6; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; s4 = x[3+idt]; s5 = x[4+idt]; s6 = x[5+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_7_NaturalOrdering_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_7_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,s7,x1,x2,x3,x4,x5,x6,x7,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i=0; i--) { v = aa + 49*diag[i] - 49; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 7*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt];s4 = x[3+idt]; s5 = x[4+idt]; s6 = x[5+idt];s7 = x[6+idt]; while (nz--) { idx = 7*(*vi--); x[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5 + v[5]*s6 + v[6]*s7; x[idx+1] -= v[7]*s1 + v[8]*s2 + v[9]*s3 + v[10]*s4 + v[11]*s5 + v[12]*s6 + v[13]*s7; x[idx+2] -= v[14]*s1 + v[15]*s2 + v[16]*s3 + v[17]*s4 + v[18]*s5 + v[19]*s6 + v[20]*s7; x[idx+3] -= v[21]*s1 + v[22]*s2 + v[23]*s3 + v[24]*s4 + v[25]*s5 + v[26]*s6 + v[27]*s7; x[idx+4] -= v[28]*s1 + v[29]*s2 + v[30]*s3 + v[31]*s4 + v[32]*s5 + v[33]*s6 + v[34]*s7; x[idx+5] -= v[35]*s1 + v[36]*s2 + v[37]*s3 + v[38]*s4 + v[39]*s5 + v[40]*s6 + v[41]*s7; x[idx+6] -= v[42]*s1 + v[43]*s2 + v[44]*s3 + v[45]*s4 + v[46]*s5 + v[47]*s6 + v[48]*s7; v -= 49; } } ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*49*(a->nz) - 7.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_7_NaturalOrdering" PetscErrorCode MatSolveTranspose_SeqBAIJ_7_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; PetscInt nz,idx,idt,j,i,oidx; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,s7,x1,x2,x3,x4,x5,x6,x7,*x; PetscFunctionBegin; ierr = VecCopy(bb,xx);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the U^T */ idx = 0; for (i=0; i-nz;j--) { oidx = bs*vi[j]; x[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5 + v[5]*s6 + v[6]*s7; x[oidx+1] -= v[7]*s1 + v[8]*s2 + v[9]*s3 + v[10]*s4 + v[11]*s5 + v[12]*s6 + v[13]*s7; x[oidx+2] -= v[14]*s1 + v[15]*s2 + v[16]*s3 + v[17]*s4 + v[18]*s5 + v[19]*s6 + v[20]*s7; x[oidx+3] -= v[21]*s1 + v[22]*s2 + v[23]*s3 + v[24]*s4 + v[25]*s5 + v[26]*s6 + v[27]*s7; x[oidx+4] -= v[28]*s1 + v[29]*s2 + v[30]*s3 + v[31]*s4 + v[32]*s5 + v[33]*s6 + v[34]*s7; x[oidx+5] -= v[35]*s1 + v[36]*s2 + v[37]*s3 + v[38]*s4 + v[39]*s5 + v[40]*s6 + v[41]*s7; x[oidx+6] -= v[42]*s1 + v[43]*s2 + v[44]*s3 + v[45]*s4 + v[46]*s5 + v[47]*s6 + v[48]*s7; v -= bs2; } x[idx] = s1; x[1+idx] = s2; x[2+idx] = s3; x[3+idx] = s4; x[4+idx] = s5; x[5+idx] = s6; x[6+idx] = s7; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; s4 = x[3+idt]; s5 = x[4+idt]; s6 = x[5+idt]; s7 = x[6+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } /*---------------------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_1" PetscErrorCode MatSolveTranspose_SeqBAIJ_1(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; IS iscol = a->col,isrow = a->row; PetscErrorCode ierr; const PetscInt *rout,*cout,*r,*c,*adiag = a->diag,*ai = a->i,*aj = a->j,*vi; PetscInt i,n = a->mbs,j; PetscInt nz; PetscScalar *x,*tmp,s1; const MatScalar *aa = a->a,*v; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); tmp = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ for (i=0; i=0; i--) { v = aa + ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; s1 = tmp[i]; for (j=0; jnz-A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_1_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_1_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz; const MatScalar *aa=a->a,*v; PetscScalar s1,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ for (i=0; i=0; i--) { v = aa + diag[i] - 1; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; s1 = t[i]; while (nz--) { t[*vi--] -= (*v--)*s1; } } /* copy t into x according to permutation */ for (i=0; inz) - A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_2_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_2_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,ii,ic,ir,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,x1,x2,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ ii = 0; for (i=0; i=0; i--) { v = aa + 4*diag[i] - 4; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 2*i; s1 = t[idt]; s2 = t[1+idt]; while (nz--) { idx = 2*(*vi--); t[idx] -= v[0]*s1 + v[1]*s2; t[idx+1] -= v[2]*s1 + v[3]*s2; v -= 4; } } /* copy t into x according to permutation */ ii = 0; for (i=0; inz) - 2.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_2" PetscErrorCode MatSolveTranspose_SeqBAIJ_2(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; IS iscol=a->col,isrow=a->row; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; const PetscInt *r,*c,*rout,*cout; PetscInt nz,idx,idt,j,i,oidx,ii,ic,ir; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,x1,x2,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy b into temp work space according to permutation */ for (i=0;i-nz;j--) { oidx = bs*vi[j]; t[oidx] -= v[0]*s1 + v[1]*s2; t[oidx+1] -= v[2]*s1 + v[3]*s2; v -= bs2; } t[idx] = s1;t[1+idx] = s2; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = t[idt]; s2 = t[1+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_3_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_3_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,ii,ic,ir,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,x1,x2,x3,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ ii = 0; for (i=0; i=0; i--) { v = aa + 9*diag[i] - 9; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 3*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; while (nz--) { idx = 3*(*vi--); t[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3; t[idx+1] -= v[3]*s1 + v[4]*s2 + v[5]*s3; t[idx+2] -= v[6]*s1 + v[7]*s2 + v[8]*s3; v -= 9; } } /* copy t into x according to permutation */ ii = 0; for (i=0; inz) - 3.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_3" PetscErrorCode MatSolveTranspose_SeqBAIJ_3(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; IS iscol=a->col,isrow=a->row; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; const PetscInt *r,*c,*rout,*cout; PetscInt nz,idx,idt,j,i,oidx,ii,ic,ir; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,x1,x2,x3,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy b into temp work space according to permutation */ for (i=0;i-nz;j--) { oidx = bs*vi[j]; t[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3; t[oidx+1] -= v[3]*s1 + v[4]*s2 + v[5]*s3; t[oidx+2] -= v[6]*s1 + v[7]*s2 + v[8]*s3; v -= bs2; } t[idx] = s1;t[1+idx] = s2; t[2+idx] = s3; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_4_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_4_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,ii,ic,ir,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,x1,x2,x3,x4,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ ii = 0; for (i=0; i=0; i--) { v = aa + 16*diag[i] - 16; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 4*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; while (nz--) { idx = 4*(*vi--); t[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4; t[idx+1] -= v[4]*s1 + v[5]*s2 + v[6]*s3 + v[7]*s4; t[idx+2] -= v[8]*s1 + v[9]*s2 + v[10]*s3 + v[11]*s4; t[idx+3] -= v[12]*s1 + v[13]*s2 + v[14]*s3 + v[15]*s4; v -= 16; } } /* copy t into x according to permutation */ ii = 0; for (i=0; inz) - 4.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_4" PetscErrorCode MatSolveTranspose_SeqBAIJ_4(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; IS iscol=a->col,isrow=a->row; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; const PetscInt *r,*c,*rout,*cout; PetscInt nz,idx,idt,j,i,oidx,ii,ic,ir; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,x1,x2,x3,x4,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy b into temp work space according to permutation */ for (i=0;i-nz;j--) { oidx = bs*vi[j]; t[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4; t[oidx+1] -= v[4]*s1 + v[5]*s2 + v[6]*s3 + v[7]*s4; t[oidx+2] -= v[8]*s1 + v[9]*s2 + v[10]*s3 + v[11]*s4; t[oidx+3] -= v[12]*s1 + v[13]*s2 + v[14]*s3 + v[15]*s4; v -= bs2; } t[idx] = s1;t[1+idx] = s2; t[2+idx] = s3; t[3+idx] = s4; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; s4 = t[3+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_5_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_5_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,ii,ic,ir,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,x1,x2,x3,x4,x5,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ ii = 0; for (i=0; i=0; i--) { v = aa + 25*diag[i] - 25; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 5*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; s5 = t[4+idt]; while (nz--) { idx = 5*(*vi--); t[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5; t[idx+1] -= v[5]*s1 + v[6]*s2 + v[7]*s3 + v[8]*s4 + v[9]*s5; t[idx+2] -= v[10]*s1 + v[11]*s2 + v[12]*s3 + v[13]*s4 + v[14]*s5; t[idx+3] -= v[15]*s1 + v[16]*s2 + v[17]*s3 + v[18]*s4 + v[19]*s5; t[idx+4] -= v[20]*s1 + v[21]*s2 + v[22]*s3 + v[23]*s4 + v[24]*s5; v -= 25; } } /* copy t into x according to permutation */ ii = 0; for (i=0; inz) - 5.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_5" PetscErrorCode MatSolveTranspose_SeqBAIJ_5(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; IS iscol=a->col,isrow=a->row; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; const PetscInt *r,*c,*rout,*cout; PetscInt nz,idx,idt,j,i,oidx,ii,ic,ir; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,x1,x2,x3,x4,x5,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy b into temp work space according to permutation */ for (i=0;i-nz;j--) { oidx = bs*vi[j]; t[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5; t[oidx+1] -= v[5]*s1 + v[6]*s2 + v[7]*s3 + v[8]*s4 + v[9]*s5; t[oidx+2] -= v[10]*s1 + v[11]*s2 + v[12]*s3 + v[13]*s4 + v[14]*s5; t[oidx+3] -= v[15]*s1 + v[16]*s2 + v[17]*s3 + v[18]*s4 + v[19]*s5; t[oidx+4] -= v[20]*s1 + v[21]*s2 + v[22]*s3 + v[23]*s4 + v[24]*s5; v -= bs2; } t[idx] = s1;t[1+idx] = s2; t[2+idx] = s3; t[3+idx] = s4; t[4+idx] =s5; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; s4 = t[3+idt]; s5 = t[4+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_6_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_6_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,ii,ic,ir,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,x1,x2,x3,x4,x5,x6,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ ii = 0; for (i=0; i=0; i--) { v = aa + 36*diag[i] - 36; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 6*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; s5 = t[4+idt]; s6 = t[5+idt]; while (nz--) { idx = 6*(*vi--); t[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5 + v[5]*s6; t[idx+1] -= v[6]*s1 + v[7]*s2 + v[8]*s3 + v[9]*s4 + v[10]*s5 + v[11]*s6; t[idx+2] -= v[12]*s1 + v[13]*s2 + v[14]*s3 + v[15]*s4 + v[16]*s5 + v[17]*s6; t[idx+3] -= v[18]*s1 + v[19]*s2 + v[20]*s3 + v[21]*s4 + v[22]*s5 + v[23]*s6; t[idx+4] -= v[24]*s1 + v[25]*s2 + v[26]*s3 + v[27]*s4 + v[28]*s5 + v[29]*s6; t[idx+5] -= v[30]*s1 + v[31]*s2 + v[32]*s3 + v[33]*s4 + v[34]*s5 + v[35]*s6; v -= 36; } } /* copy t into x according to permutation */ ii = 0; for (i=0; inz) - 6.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_6" PetscErrorCode MatSolveTranspose_SeqBAIJ_6(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; IS iscol=a->col,isrow=a->row; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; const PetscInt *r,*c,*rout,*cout; PetscInt nz,idx,idt,j,i,oidx,ii,ic,ir; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,x1,x2,x3,x4,x5,x6,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy b into temp work space according to permutation */ for (i=0;i-nz;j--) { oidx = bs*vi[j]; t[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5 + v[5]*s6; t[oidx+1] -= v[6]*s1 + v[7]*s2 + v[8]*s3 + v[9]*s4 + v[10]*s5 + v[11]*s6; t[oidx+2] -= v[12]*s1 + v[13]*s2 + v[14]*s3 + v[15]*s4 + v[16]*s5 + v[17]*s6; t[oidx+3] -= v[18]*s1 + v[19]*s2 + v[20]*s3 + v[21]*s4 + v[22]*s5 + v[23]*s6; t[oidx+4] -= v[24]*s1 + v[25]*s2 + v[26]*s3 + v[27]*s4 + v[28]*s5 + v[29]*s6; t[oidx+5] -= v[30]*s1 + v[31]*s2 + v[32]*s3 + v[33]*s4 + v[34]*s5 + v[35]*s6; v -= bs2; } t[idx] = s1;t[1+idx] = s2; t[2+idx] = s3; t[3+idx] = s4; t[4+idx] =s5; t[5+idx] = s6; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; s4 = t[3+idt]; s5 = t[4+idt]; s6 = t[5+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_7_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_7_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,ii,ic,ir,oidx; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,s7,x1,x2,x3,x4,x5,x6,x7,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ ii = 0; for (i=0; i=0; i--) { v = aa + 49*diag[i] - 49; vi = aj + diag[i] - 1; nz = diag[i] - ai[i]; idt = 7*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; s5 = t[4+idt]; s6 = t[5+idt];s7 = t[6+idt]; while (nz--) { idx = 7*(*vi--); t[idx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5 + v[5]*s6 + v[6]*s7; t[idx+1] -= v[7]*s1 + v[8]*s2 + v[9]*s3 + v[10]*s4 + v[11]*s5 + v[12]*s6 + v[13]*s7; t[idx+2] -= v[14]*s1 + v[15]*s2 + v[16]*s3 + v[17]*s4 + v[18]*s5 + v[19]*s6 + v[20]*s7; t[idx+3] -= v[21]*s1 + v[22]*s2 + v[23]*s3 + v[24]*s4 + v[25]*s5 + v[26]*s6 + v[27]*s7; t[idx+4] -= v[28]*s1 + v[29]*s2 + v[30]*s3 + v[31]*s4 + v[32]*s5 + v[33]*s6 + v[34]*s7; t[idx+5] -= v[35]*s1 + v[36]*s2 + v[37]*s3 + v[38]*s4 + v[39]*s5 + v[40]*s6 + v[41]*s7; t[idx+6] -= v[42]*s1 + v[43]*s2 + v[44]*s3 + v[45]*s4 + v[46]*s5 + v[47]*s6 + v[48]*s7; v -= 49; } } /* copy t into x according to permutation */ ii = 0; for (i=0; inz) - 7.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_7" PetscErrorCode MatSolveTranspose_SeqBAIJ_7(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; IS iscol=a->col,isrow=a->row; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; const PetscInt *r,*c,*rout,*cout; PetscInt nz,idx,idt,j,i,oidx,ii,ic,ir; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,s7,x1,x2,x3,x4,x5,x6,x7,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy b into temp work space according to permutation */ for (i=0;i-nz;j--) { oidx = bs*vi[j]; t[oidx] -= v[0]*s1 + v[1]*s2 + v[2]*s3 + v[3]*s4 + v[4]*s5 + v[5]*s6 + v[6]*s7; t[oidx+1] -= v[7]*s1 + v[8]*s2 + v[9]*s3 + v[10]*s4 + v[11]*s5 + v[12]*s6 + v[13]*s7; t[oidx+2] -= v[14]*s1 + v[15]*s2 + v[16]*s3 + v[17]*s4 + v[18]*s5 + v[19]*s6 + v[20]*s7; t[oidx+3] -= v[21]*s1 + v[22]*s2 + v[23]*s3 + v[24]*s4 + v[25]*s5 + v[26]*s6 + v[27]*s7; t[oidx+4] -= v[28]*s1 + v[29]*s2 + v[30]*s3 + v[31]*s4 + v[32]*s5 + v[33]*s6 + v[34]*s7; t[oidx+5] -= v[35]*s1 + v[36]*s2 + v[37]*s3 + v[38]*s4 + v[39]*s5 + v[40]*s6 + v[41]*s7; t[oidx+6] -= v[42]*s1 + v[43]*s2 + v[44]*s3 + v[45]*s4 + v[46]*s5 + v[47]*s6 + v[48]*s7; v -= bs2; } t[idx] = s1;t[1+idx] = s2; t[2+idx] = s3; t[3+idx] = s4; t[4+idx] =s5; t[5+idx] = s6; t[6+idx] = s7; idx += bs; } /* backward solve the L^T */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; idt = bs*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; s4 = t[3+idt]; s5 = t[4+idt]; s6 = t[5+idt]; s7 = t[6+idt]; for (j=0;jnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ----------------------------------------------------------- */ #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_N_inplace" PetscErrorCode MatSolve_SeqBAIJ_N_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt n=a->mbs,*ai=a->i,*aj=a->j,*vi; PetscInt i,nz; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar *x,*s,*t,*ls; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ ierr = PetscMemcpy(t,b+bs*(*r++),bs*sizeof(PetscScalar));CHKERRQ(ierr); for (i=1; idiag[i] - ai[i]; s = t + bs*i; ierr = PetscMemcpy(s,b+bs*(*r++),bs*sizeof(PetscScalar));CHKERRQ(ierr); while (nz--) { PetscKernel_v_gets_v_minus_A_times_w(bs,s,v,t+bs*(*vi++)); v += bs2; } } /* backward solve the upper triangular */ ls = a->solve_work + A->cmap->n; for (i=n-1; i>=0; i--) { v = aa + bs2*(a->diag[i] + 1); vi = aj + a->diag[i] + 1; nz = ai[i+1] - a->diag[i] - 1; ierr = PetscMemcpy(ls,t+i*bs,bs*sizeof(PetscScalar));CHKERRQ(ierr); while (nz--) { PetscKernel_v_gets_v_minus_A_times_w(bs,ls,v,t+bs*(*vi++)); v += bs2; } PetscKernel_w_gets_A_times_v(bs,ls,aa+bs2*a->diag[i],t+i*bs); ierr = PetscMemcpy(x + bs*(*c--),t+i*bs,bs*sizeof(PetscScalar));CHKERRQ(ierr); } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*(a->bs2)*(a->nz) - A->rmap->bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ----------------------------------------------------------- */ #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_N_inplace" PetscErrorCode MatSolveTranspose_SeqBAIJ_N_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout,*ai=a->i,*aj=a->j,*vi; PetscInt i,nz,j; const PetscInt n=a->mbs,bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar *x,*t,*ls; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ for (i=0; isolve_work + A->cmap->n; for (i=0; idiag[i],t+i*bs); v = aa + bs2*(a->diag[i] + 1); vi = aj + a->diag[i] + 1; nz = ai[i+1] - a->diag[i] - 1; while (nz--) { PetscKernel_v_gets_v_minus_transA_times_w(bs,t+bs*(*vi++),v,t+i*bs); v += bs2; } } /* backward solve the lower triangular transpose */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = a->diag[i] - ai[i]; while (nz--) { PetscKernel_v_gets_v_minus_transA_times_w(bs,t+bs*(*vi++),v,t+i*bs); v += bs2; } } /* copy t into x according to permutation */ for (i=0; ibs2)*(a->nz) - A->rmap->bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolveTranspose_SeqBAIJ_N" PetscErrorCode MatSolveTranspose_SeqBAIJ_N(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt n=a->mbs,*ai=a->i,*aj=a->j,*vi,*diag=a->diag; PetscInt i,j,nz; const PetscInt bs=A->rmap->bs,bs2=a->bs2; const MatScalar *aa=a->a,*v; PetscScalar *x,*t,*ls; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* copy the b into temp work space according to permutation */ for (i=0; isolve_work + A->cmap->n; for (i=0; i-nz;j--) { PetscKernel_v_gets_v_minus_transA_times_w(bs,t+bs*(vi[j]),v,t+i*bs); v -= bs2; } } /* backward solve the lower triangular transpose */ for (i=n-1; i>=0; i--) { v = aa + bs2*ai[i]; vi = aj + ai[i]; nz = ai[i+1] - ai[i]; for (j=0;jbs2)*(a->nz) - A->rmap->bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } /* bs = 15 for PFLOTRAN. Block operations are done by accessing all the columns of the block at once */ #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_15_NaturalOrdering_ver2" PetscErrorCode MatSolve_SeqBAIJ_15_NaturalOrdering_ver2(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt n=a->mbs,*ai=a->i,*aj=a->j,*adiag=a->diag,*vi,bs=A->rmap->bs,bs2=a->bs2; PetscInt i,nz,idx,idt,m; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,s7,s8,s9,s10,s11,s12,s13,s14,s15; PetscScalar x1,x2,x3,x4,x5,x6,x7,x8,x9,x10,x11,x12,x13,x14,x15; PetscScalar *x; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx]; x[2] = b[2+idx]; x[3] = b[3+idx]; x[4] = b[4+idx]; x[5] = b[5+idx]; x[6] = b[6+idx]; x[7] = b[7+idx]; x[8] = b[8+idx]; x[9] = b[9+idx]; x[10] = b[10+idx]; x[11] = b[11+idx]; x[12] = b[12+idx]; x[13] = b[13+idx]; x[14] = b[14+idx]; for (i=1; i=0; i--) { v = aa + bs2*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1] - 1; idt = bs*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; s4 = x[3+idt]; s5 = x[4+idt]; s6 = x[5+idt]; s7 = x[6+idt]; s8 = x[7+idt]; s9 = x[8+idt]; s10 = x[9+idt]; s11 = x[10+idt]; s12 = x[11+idt]; s13 = x[12+idt]; s14 = x[13+idt]; s15 = x[14+idt]; for (m=0;mnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } /* bs = 15 for PFLOTRAN. Block operations are done by accessing one column at at time */ /* Default MatSolve for block size 15 */ #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_15_NaturalOrdering_ver1" PetscErrorCode MatSolve_SeqBAIJ_15_NaturalOrdering_ver1(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; PetscErrorCode ierr; const PetscInt n=a->mbs,*ai=a->i,*aj=a->j,*adiag=a->diag,*vi,bs=A->rmap->bs,bs2=a->bs2; PetscInt i,k,nz,idx,idt,m; const MatScalar *aa=a->a,*v; PetscScalar s[15]; PetscScalar *x,xv; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ for (i=0; i=0; i--) { v = aa + bs2*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1] - 1; idt = bs*i; s[0] = x[idt]; s[1] = x[1+idt]; s[2] = x[2+idt]; s[3] = x[3+idt]; s[4] = x[4+idt]; s[5] = x[5+idt]; s[6] = x[6+idt]; s[7] = x[7+idt]; s[8] = x[8+idt]; s[9] = x[9+idt]; s[10] = x[10+idt]; s[11] = x[11+idt]; s[12] = x[12+idt]; s[13] = x[13+idt]; s[14] = x[14+idt]; for (m=0;mnz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_7_inplace" PetscErrorCode MatSolve_SeqBAIJ_7_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*ai=a->i,*aj=a->j; const PetscInt *rout,*cout,*diag = a->diag,*vi,n=a->mbs; PetscInt i,nz,idx,idt,idc; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,s7,x1,x2,x3,x4,x5,x6,x7,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ idx = 7*(*r++); t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; t[3] = b[3+idx]; t[4] = b[4+idx]; t[5] = b[5+idx]; t[6] = b[6+idx]; for (i=1; i=0; i--) { v = aa + 49*diag[i] + 49; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 7*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; s5 = t[4+idt]; s6 = t[5+idt];s7 = t[6+idt]; while (nz--) { idx = 7*(*vi++); x1 = t[idx]; x2 = t[1+idx]; x3 = t[2+idx]; x4 = t[3+idx]; x5 = t[4+idx]; x6 = t[5+idx]; x7 = t[6+idx]; s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; v += 49; } idc = 7*(*c--); v = aa + 49*diag[i]; x[idc] = t[idt] = v[0]*s1+v[7]*s2+v[14]*s3+ v[21]*s4+v[28]*s5+v[35]*s6+v[42]*s7; x[1+idc] = t[1+idt] = v[1]*s1+v[8]*s2+v[15]*s3+ v[22]*s4+v[29]*s5+v[36]*s6+v[43]*s7; x[2+idc] = t[2+idt] = v[2]*s1+v[9]*s2+v[16]*s3+ v[23]*s4+v[30]*s5+v[37]*s6+v[44]*s7; x[3+idc] = t[3+idt] = v[3]*s1+v[10]*s2+v[17]*s3+ v[24]*s4+v[31]*s5+v[38]*s6+v[45]*s7; x[4+idc] = t[4+idt] = v[4]*s1+v[11]*s2+v[18]*s3+ v[25]*s4+v[32]*s5+v[39]*s6+v[46]*s7; x[5+idc] = t[5+idt] = v[5]*s1+v[12]*s2+v[19]*s3+ v[26]*s4+v[33]*s5+v[40]*s6+v[47]*s7; x[6+idc] = t[6+idt] = v[6]*s1+v[13]*s2+v[20]*s3+ v[27]*s4+v[34]*s5+v[41]*s6+v[48]*s7; } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*49*(a->nz) - 7.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_7" PetscErrorCode MatSolve_SeqBAIJ_7(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*ai=a->i,*aj=a->j,*adiag=a->diag; const PetscInt n=a->mbs,*rout,*cout,*vi; PetscInt i,nz,idx,idt,idc,m; const MatScalar *aa=a->a,*v; PetscScalar s1,s2,s3,s4,s5,s6,s7,x1,x2,x3,x4,x5,x6,x7,*x,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* forward solve the lower triangular */ idx = 7*r[0]; t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; t[3] = b[3+idx]; t[4] = b[4+idx]; t[5] = b[5+idx]; t[6] = b[6+idx]; for (i=1; i=0; i--) { v = aa + 49*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1] - 1; idt = 7*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; s5 = t[4+idt]; s6 = t[5+idt];s7 = t[6+idt]; for (m=0;mnz) - 7.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_7_NaturalOrdering_inplace" PetscErrorCode MatSolve_SeqBAIJ_7_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscErrorCode ierr; PetscInt i,nz,idx,idt,jdx; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,s5,s6,s7,x1,x2,x3,x4,x5,x6,x7; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx]; x[2] = b[2+idx]; x[3] = b[3+idx]; x[4] = b[4+idx]; x[5] = b[5+idx]; x[6] = b[6+idx]; for (i=1; i=0; i--) { v = aa + 49*diag[i] + 49; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 7*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; s4 = x[3+idt]; s5 = x[4+idt]; s6 = x[5+idt]; s7 = x[6+idt]; while (nz--) { idx = 7*(*vi++); x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; v += 49; } v = aa + 49*diag[i]; x[idt] = v[0]*s1 + v[7]*s2 + v[14]*s3 + v[21]*s4 + v[28]*s5 + v[35]*s6 + v[42]*s7; x[1+idt] = v[1]*s1 + v[8]*s2 + v[15]*s3 + v[22]*s4 + v[29]*s5 + v[36]*s6 + v[43]*s7; x[2+idt] = v[2]*s1 + v[9]*s2 + v[16]*s3 + v[23]*s4 + v[30]*s5 + v[37]*s6 + v[44]*s7; x[3+idt] = v[3]*s1 + v[10]*s2 + v[17]*s3 + v[24]*s4 + v[31]*s5 + v[38]*s6 + v[45]*s7; x[4+idt] = v[4]*s1 + v[11]*s2 + v[18]*s3 + v[25]*s4 + v[32]*s5 + v[39]*s6 + v[46]*s7; x[5+idt] = v[5]*s1 + v[12]*s2 + v[19]*s3 + v[26]*s4 + v[33]*s5 + v[40]*s6 + v[47]*s7; x[6+idt] = v[6]*s1 + v[13]*s2 + v[20]*s3 + v[27]*s4 + v[34]*s5 + v[41]*s6 + v[48]*s7; } ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*36*(a->nz) - 6.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_7_NaturalOrdering" PetscErrorCode MatSolve_SeqBAIJ_7_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscErrorCode ierr; PetscInt i,k,nz,idx,jdx,idt; const PetscInt bs = A->rmap->bs,bs2 = a->bs2; const MatScalar *aa=a->a,*v; PetscScalar *x; const PetscScalar *b; PetscScalar s1,s2,s3,s4,s5,s6,s7,x1,x2,x3,x4,x5,x6,x7; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx];x[2] = b[2+idx];x[3] = b[3+idx]; x[4] = b[4+idx];x[5] = b[5+idx];x[6] = b[6+idx]; for (i=1; i=0; i--) { v = aa + bs2*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1]-1; idt = bs*i; s1 = x[idt]; s2 = x[1+idt];s3 = x[2+idt];s4 = x[3+idt]; s5 = x[4+idt];s6 = x[5+idt];s7 = x[6+idt]; for (k=0;knz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_6_inplace" PetscErrorCode MatSolve_SeqBAIJ_6_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt *diag = a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,idc; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,s5,s6,x1,x2,x3,x4,x5,x6,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ idx = 6*(*r++); t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; t[3] = b[3+idx]; t[4] = b[4+idx]; t[5] = b[5+idx]; for (i=1; i=0; i--) { v = aa + 36*diag[i] + 36; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 6*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; s5 = t[4+idt];s6 = t[5+idt]; while (nz--) { idx = 6*(*vi++); x1 = t[idx]; x2 = t[1+idx]; x3 = t[2+idx]; x4 = t[3+idx]; x5 = t[4+idx]; x6 = t[5+idx]; s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; v += 36; } idc = 6*(*c--); v = aa + 36*diag[i]; x[idc] = t[idt] = v[0]*s1+v[6]*s2+v[12]*s3+ v[18]*s4+v[24]*s5+v[30]*s6; x[1+idc] = t[1+idt] = v[1]*s1+v[7]*s2+v[13]*s3+ v[19]*s4+v[25]*s5+v[31]*s6; x[2+idc] = t[2+idt] = v[2]*s1+v[8]*s2+v[14]*s3+ v[20]*s4+v[26]*s5+v[32]*s6; x[3+idc] = t[3+idt] = v[3]*s1+v[9]*s2+v[15]*s3+ v[21]*s4+v[27]*s5+v[33]*s6; x[4+idc] = t[4+idt] = v[4]*s1+v[10]*s2+v[16]*s3+ v[22]*s4+v[28]*s5+v[34]*s6; x[5+idc] = t[5+idt] = v[5]*s1+v[11]*s2+v[17]*s3+ v[23]*s4+v[29]*s5+v[35]*s6; } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*36*(a->nz) - 6.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_6" PetscErrorCode MatSolve_SeqBAIJ_6(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscInt i,nz,idx,idt,idc,m; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,s5,s6,x1,x2,x3,x4,x5,x6,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* forward solve the lower triangular */ idx = 6*r[0]; t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; t[3] = b[3+idx]; t[4] = b[4+idx]; t[5] = b[5+idx]; for (i=1; i=0; i--) { v = aa + 36*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1] - 1; idt = 6*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; s5 = t[4+idt];s6 = t[5+idt]; for (m=0;mnz) - 6.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_6_NaturalOrdering_inplace" PetscErrorCode MatSolve_SeqBAIJ_6_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; PetscInt i,nz,idx,idt,jdx; PetscErrorCode ierr; const PetscInt *diag = a->diag,*vi,n=a->mbs,*ai=a->i,*aj=a->j; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,s5,s6,x1,x2,x3,x4,x5,x6; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx]; x[2] = b[2+idx]; x[3] = b[3+idx]; x[4] = b[4+idx]; x[5] = b[5+idx]; for (i=1; i=0; i--) { v = aa + 36*diag[i] + 36; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 6*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; s4 = x[3+idt]; s5 = x[4+idt]; s6 = x[5+idt]; while (nz--) { idx = 6*(*vi++); x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; v += 36; } v = aa + 36*diag[i]; x[idt] = v[0]*s1 + v[6]*s2 + v[12]*s3 + v[18]*s4 + v[24]*s5 + v[30]*s6; x[1+idt] = v[1]*s1 + v[7]*s2 + v[13]*s3 + v[19]*s4 + v[25]*s5 + v[31]*s6; x[2+idt] = v[2]*s1 + v[8]*s2 + v[14]*s3 + v[20]*s4 + v[26]*s5 + v[32]*s6; x[3+idt] = v[3]*s1 + v[9]*s2 + v[15]*s3 + v[21]*s4 + v[27]*s5 + v[33]*s6; x[4+idt] = v[4]*s1 + v[10]*s2 + v[16]*s3 + v[22]*s4 + v[28]*s5 + v[34]*s6; x[5+idt] = v[5]*s1 + v[11]*s2 + v[17]*s3 + v[23]*s4 + v[29]*s5 + v[35]*s6; } ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*36*(a->nz) - 6.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_6_NaturalOrdering" PetscErrorCode MatSolve_SeqBAIJ_6_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscErrorCode ierr; PetscInt i,k,nz,idx,jdx,idt; const PetscInt bs = A->rmap->bs,bs2 = a->bs2; const MatScalar *aa=a->a,*v; PetscScalar *x; const PetscScalar *b; PetscScalar s1,s2,s3,s4,s5,s6,x1,x2,x3,x4,x5,x6; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx];x[2] = b[2+idx];x[3] = b[3+idx]; x[4] = b[4+idx];x[5] = b[5+idx]; for (i=1; i=0; i--) { v = aa + bs2*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1]-1; idt = bs*i; s1 = x[idt]; s2 = x[1+idt];s3 = x[2+idt];s4 = x[3+idt]; s5 = x[4+idt];s6 = x[5+idt]; for (k=0;knz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_5_inplace" PetscErrorCode MatSolve_SeqBAIJ_5_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout,*diag = a->diag; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,idc; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,s5,x1,x2,x3,x4,x5,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ idx = 5*(*r++); t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; t[3] = b[3+idx]; t[4] = b[4+idx]; for (i=1; i=0; i--) { v = aa + 25*diag[i] + 25; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 5*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; s5 = t[4+idt]; while (nz--) { idx = 5*(*vi++); x1 = t[idx]; x2 = t[1+idx]; x3 = t[2+idx]; x4 = t[3+idx]; x5 = t[4+idx]; s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; v += 25; } idc = 5*(*c--); v = aa + 25*diag[i]; x[idc] = t[idt] = v[0]*s1+v[5]*s2+v[10]*s3+ v[15]*s4+v[20]*s5; x[1+idc] = t[1+idt] = v[1]*s1+v[6]*s2+v[11]*s3+ v[16]*s4+v[21]*s5; x[2+idc] = t[2+idt] = v[2]*s1+v[7]*s2+v[12]*s3+ v[17]*s4+v[22]*s5; x[3+idc] = t[3+idt] = v[3]*s1+v[8]*s2+v[13]*s3+ v[18]*s4+v[23]*s5; x[4+idc] = t[4+idt] = v[4]*s1+v[9]*s2+v[14]*s3+ v[19]*s4+v[24]*s5; } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*25*(a->nz) - 5.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_5" PetscErrorCode MatSolve_SeqBAIJ_5(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt *r,*c,*rout,*cout; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscInt i,nz,idx,idt,idc,m; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,s5,x1,x2,x3,x4,x5,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* forward solve the lower triangular */ idx = 5*r[0]; t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; t[3] = b[3+idx]; t[4] = b[4+idx]; for (i=1; i=0; i--) { v = aa + 25*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1] - 1; idt = 5*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; s5 = t[4+idt]; for (m=0;mnz) - 5.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_5_NaturalOrdering_inplace" PetscErrorCode MatSolve_SeqBAIJ_5_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt *diag=a->diag,n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,jdx; PetscErrorCode ierr; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,s5,x1,x2,x3,x4,x5; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx]; x[2] = b[2+idx]; x[3] = b[3+idx];x[4] = b[4+idx]; for (i=1; i=0; i--) { v = aa + 25*diag[i] + 25; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 5*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt];s4 = x[3+idt]; s5 = x[4+idt]; while (nz--) { idx = 5*(*vi++); x1 = x[idx]; x2 = x[1+idx];x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; v += 25; } v = aa + 25*diag[i]; x[idt] = v[0]*s1 + v[5]*s2 + v[10]*s3 + v[15]*s4 + v[20]*s5; x[1+idt] = v[1]*s1 + v[6]*s2 + v[11]*s3 + v[16]*s4 + v[21]*s5; x[2+idt] = v[2]*s1 + v[7]*s2 + v[12]*s3 + v[17]*s4 + v[22]*s5; x[3+idt] = v[3]*s1 + v[8]*s2 + v[13]*s3 + v[18]*s4 + v[23]*s5; x[4+idt] = v[4]*s1 + v[9]*s2 + v[14]*s3 + v[19]*s4 + v[24]*s5; } ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*25*(a->nz) - 5.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_5_NaturalOrdering" PetscErrorCode MatSolve_SeqBAIJ_5_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscInt i,k,nz,idx,idt,jdx; PetscErrorCode ierr; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,s5,x1,x2,x3,x4,x5; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx]; x[2] = b[2+idx]; x[3] = b[3+idx];x[4] = b[4+idx]; for (i=1; i=0; i--) { v = aa + 25*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1]-1; idt = 5*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt];s4 = x[3+idt]; s5 = x[4+idt]; for (k=0;knz) - 5.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_4_inplace" PetscErrorCode MatSolve_SeqBAIJ_4_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,idc; const PetscInt *r,*c,*diag = a->diag,*rout,*cout; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,x1,x2,x3,x4,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ idx = 4*(*r++); t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; t[3] = b[3+idx]; for (i=1; i=0; i--) { v = aa + 16*diag[i] + 16; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 4*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; while (nz--) { idx = 4*(*vi++); x1 = t[idx]; x2 = t[1+idx]; x3 = t[2+idx]; x4 = t[3+idx]; s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; v += 16; } idc = 4*(*c--); v = aa + 16*diag[i]; x[idc] = t[idt] = v[0]*s1+v[4]*s2+v[8]*s3+v[12]*s4; x[1+idc] = t[1+idt] = v[1]*s1+v[5]*s2+v[9]*s3+v[13]*s4; x[2+idc] = t[2+idt] = v[2]*s1+v[6]*s2+v[10]*s3+v[14]*s4; x[3+idc] = t[3+idt] = v[3]*s1+v[7]*s2+v[11]*s3+v[15]*s4; } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*16*(a->nz) - 4.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_4" PetscErrorCode MatSolve_SeqBAIJ_4(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscInt i,nz,idx,idt,idc,m; const PetscInt *r,*c,*rout,*cout; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,s4,x1,x2,x3,x4,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* forward solve the lower triangular */ idx = 4*r[0]; t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; t[3] = b[3+idx]; for (i=1; i=0; i--) { v = aa + 16*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1] - 1; idt = 4*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt];s4 = t[3+idt]; for (m=0;mnz) - 4.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_4_Demotion" PetscErrorCode MatSolve_SeqBAIJ_4_Demotion(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,idc; const PetscInt *r,*c,*diag = a->diag,*rout,*cout; const MatScalar *aa=a->a,*v; MatScalar s1,s2,s3,s4,x1,x2,x3,x4,*t; PetscScalar *x; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = (MatScalar *)a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ idx = 4*(*r++); t[0] = (MatScalar)b[idx]; t[1] = (MatScalar)b[1+idx]; t[2] = (MatScalar)b[2+idx]; t[3] = (MatScalar)b[3+idx]; for (i=1; i=0; i--) { v = aa + 16*diag[i] + 16; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 4*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; s4 = t[3+idt]; while (nz--) { idx = 4*(*vi++); x1 = t[idx]; x2 = t[1+idx]; x3 = t[2+idx]; x4 = t[3+idx]; s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; v += 16; } idc = 4*(*c--); v = aa + 16*diag[i]; t[idt] = v[0]*s1+v[4]*s2+v[8]*s3+v[12]*s4; t[1+idt] = v[1]*s1+v[5]*s2+v[9]*s3+v[13]*s4; t[2+idt] = v[2]*s1+v[6]*s2+v[10]*s3+v[14]*s4; t[3+idt] = v[3]*s1+v[7]*s2+v[11]*s3+v[15]*s4; x[idc] = (PetscScalar)t[idt]; x[1+idc] = (PetscScalar)t[1+idt]; x[2+idc] = (PetscScalar)t[2+idt]; x[3+idc] = (PetscScalar)t[3+idt]; } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*16*(a->nz) - 4.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #if defined (PETSC_HAVE_SSE) #include PETSC_HAVE_SSE #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_4_SSE_Demotion" PetscErrorCode MatSolve_SeqBAIJ_4_SSE_Demotion(Mat A,Vec bb,Vec xx) { /* Note: This code uses demotion of double to float when performing the mixed-mode computation. This may not be numerically reasonable for all applications. */ Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; PetscInt i,n=a->mbs,*vi,*ai=a->i,*aj=a->j,nz,idx,idt,idc,ai16; const PetscInt *r,*c,*diag = a->diag,*rout,*cout; MatScalar *aa=a->a,*v; PetscScalar *x,*b,*t; /* Make space in temp stack for 16 Byte Aligned arrays */ float ssealignedspace[11],*tmps,*tmpx; unsigned long offset; PetscFunctionBegin; SSE_SCOPE_BEGIN; offset = (unsigned long)ssealignedspace % 16; if (offset) offset = (16 - offset)/4; tmps = &ssealignedspace[offset]; tmpx = &ssealignedspace[offset+4]; PREFETCH_NTA(aa+16*ai[1]); ierr = VecGetArray(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ idx = 4*(*r++); t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; t[3] = b[3+idx]; v = aa + 16*ai[1]; for (i=1; i=0;) { PREFETCH_NTA(&v[8]); vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; /* Demote accumulator from double to float */ CONVERT_DOUBLE4_FLOAT4(tmps,&t[idt]); LOAD_PS(tmps,XMM7); while (nz--) { PREFETCH_NTA(&v[16]); idx = 4*(*vi++); /* Demote solution (so far) from double to float */ CONVERT_DOUBLE4_FLOAT4(tmpx,&t[idx]); /* 4x4 Matrix-Vector Product with negative accumulation: */ SSE_INLINE_BEGIN_2(tmpx,v) SSE_LOAD_PS(SSE_ARG_1,FLOAT_0,XMM6) /* First Column */ SSE_COPY_PS(XMM0,XMM6) SSE_SHUFFLE(XMM0,XMM0,0x00) SSE_MULT_PS_M(XMM0,SSE_ARG_2,FLOAT_0) SSE_SUB_PS(XMM7,XMM0) /* Second Column */ SSE_COPY_PS(XMM1,XMM6) SSE_SHUFFLE(XMM1,XMM1,0x55) SSE_MULT_PS_M(XMM1,SSE_ARG_2,FLOAT_4) SSE_SUB_PS(XMM7,XMM1) SSE_PREFETCH_NTA(SSE_ARG_2,FLOAT_24) /* Third Column */ SSE_COPY_PS(XMM2,XMM6) SSE_SHUFFLE(XMM2,XMM2,0xAA) SSE_MULT_PS_M(XMM2,SSE_ARG_2,FLOAT_8) SSE_SUB_PS(XMM7,XMM2) /* Fourth Column */ SSE_COPY_PS(XMM3,XMM6) SSE_SHUFFLE(XMM3,XMM3,0xFF) SSE_MULT_PS_M(XMM3,SSE_ARG_2,FLOAT_12) SSE_SUB_PS(XMM7,XMM3) SSE_INLINE_END_2 v += 16; } v = aa + ai16; ai16 = 16*diag[--i]; PREFETCH_NTA(aa+ai16+16); /* Scale the result by the diagonal 4x4 block, which was inverted as part of the factorization */ SSE_INLINE_BEGIN_3(v,tmps,aa+ai16) /* First Column */ SSE_COPY_PS(XMM0,XMM7) SSE_SHUFFLE(XMM0,XMM0,0x00) SSE_MULT_PS_M(XMM0,SSE_ARG_1,FLOAT_0) /* Second Column */ SSE_COPY_PS(XMM1,XMM7) SSE_SHUFFLE(XMM1,XMM1,0x55) SSE_MULT_PS_M(XMM1,SSE_ARG_1,FLOAT_4) SSE_ADD_PS(XMM0,XMM1) SSE_PREFETCH_NTA(SSE_ARG_3,FLOAT_24) /* Third Column */ SSE_COPY_PS(XMM2,XMM7) SSE_SHUFFLE(XMM2,XMM2,0xAA) SSE_MULT_PS_M(XMM2,SSE_ARG_1,FLOAT_8) SSE_ADD_PS(XMM0,XMM2) /* Fourth Column */ SSE_COPY_PS(XMM3,XMM7) SSE_SHUFFLE(XMM3,XMM3,0xFF) SSE_MULT_PS_M(XMM3,SSE_ARG_1,FLOAT_12) SSE_ADD_PS(XMM0,XMM3) SSE_STORE_PS(SSE_ARG_2,FLOAT_0,XMM0) SSE_INLINE_END_3 /* Promote solution from float to double */ CONVERT_FLOAT4_DOUBLE4(&t[idt],tmps); /* Apply reordering to t and stream into x. */ /* This way, x doesn't pollute the cache. */ /* Be careful with size: 2 doubles = 4 floats! */ idc = 4*(*c--); SSE_INLINE_BEGIN_2((float *)&t[idt],(float *)&x[idc]) /* x[idc] = t[idt]; x[1+idc] = t[1+idc]; */ SSE_LOAD_PS(SSE_ARG_1,FLOAT_0,XMM0) SSE_STREAM_PS(SSE_ARG_2,FLOAT_0,XMM0) /* x[idc+2] = t[idt+2]; x[3+idc] = t[3+idc]; */ SSE_LOAD_PS(SSE_ARG_1,FLOAT_4,XMM1) SSE_STREAM_PS(SSE_ARG_2,FLOAT_4,XMM1) SSE_INLINE_END_2 v = aa + ai16 + 16; idt -= 4; } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*16*(a->nz) - 4.0*A->cmap->n);CHKERRQ(ierr); SSE_SCOPE_END; PetscFunctionReturn(0); } #endif /* Special case where the matrix was ILU(0) factored in the natural ordering. This eliminates the need for the column and row permutation. */ #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_4_NaturalOrdering_inplace" PetscErrorCode MatSolve_SeqBAIJ_4_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; PetscInt n=a->mbs; const PetscInt *ai=a->i,*aj=a->j; PetscErrorCode ierr; const PetscInt *diag = a->diag; const MatScalar *aa=a->a; PetscScalar *x; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); #if defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJBLAS) { static PetscScalar w[2000]; /* very BAD need to fix */ fortransolvebaij4blas_(&n,x,ai,aj,diag,aa,b,w); } #elif defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) { static PetscScalar w[2000]; /* very BAD need to fix */ fortransolvebaij4_(&n,x,ai,aj,diag,aa,b,w); } #elif defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJUNROLL) fortransolvebaij4unroll_(&n,x,ai,aj,diag,aa,b); #else { PetscScalar s1,s2,s3,s4,x1,x2,x3,x4; const MatScalar *v; PetscInt jdx,idt,idx,nz,i,ai16; const PetscInt *vi; /* forward solve the lower triangular */ idx = 0; x[0] = b[0]; x[1] = b[1]; x[2] = b[2]; x[3] = b[3]; for (i=1; i=0; i--) { ai16 = 16*diag[i]; v = aa + ai16 + 16; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt];s4 = x[3+idt]; while (nz--) { idx = 4*(*vi++); x1 = x[idx]; x2 = x[1+idx];x3 = x[2+idx]; x4 = x[3+idx]; s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; v += 16; } v = aa + ai16; x[idt] = v[0]*s1 + v[4]*s2 + v[8]*s3 + v[12]*s4; x[1+idt] = v[1]*s1 + v[5]*s2 + v[9]*s3 + v[13]*s4; x[2+idt] = v[2]*s1 + v[6]*s2 + v[10]*s3 + v[14]*s4; x[3+idt] = v[3]*s1 + v[7]*s2 + v[11]*s3 + v[15]*s4; idt -= 4; } } #endif ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*16*(a->nz) - 4.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_4_NaturalOrdering" PetscErrorCode MatSolve_SeqBAIJ_4_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscInt i,k,nz,idx,jdx,idt; PetscErrorCode ierr; const PetscInt bs = A->rmap->bs,bs2 = a->bs2; const MatScalar *aa=a->a,*v; PetscScalar *x; const PetscScalar *b; PetscScalar s1,s2,s3,s4,x1,x2,x3,x4; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx];x[2] = b[2+idx];x[3] = b[3+idx]; for (i=1; i=0; i--) { v = aa + bs2*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1]-1; idt = bs*i; s1 = x[idt]; s2 = x[1+idt];s3 = x[2+idt];s4 = x[3+idt]; for (k=0;knz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_4_NaturalOrdering_Demotion" PetscErrorCode MatSolve_SeqBAIJ_4_NaturalOrdering_Demotion(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*ai=a->i,*aj=a->j,*diag=a->diag; PetscErrorCode ierr; const MatScalar *aa=a->a; const PetscScalar *b; PetscScalar *x; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); { MatScalar s1,s2,s3,s4,x1,x2,x3,x4; const MatScalar *v; MatScalar *t=(MatScalar *)x; PetscInt jdx,idt,idx,nz,i,ai16; const PetscInt *vi; /* forward solve the lower triangular */ idx = 0; t[0] = (MatScalar)b[0]; t[1] = (MatScalar)b[1]; t[2] = (MatScalar)b[2]; t[3] = (MatScalar)b[3]; for (i=1; i=0; i--) { ai16 = 16*diag[i]; v = aa + ai16 + 16; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; s4 = t[3+idt]; while (nz--) { idx = 4*(*vi++); x1 = (MatScalar)x[idx]; x2 = (MatScalar)x[1+idx]; x3 = (MatScalar)x[2+idx]; x4 = (MatScalar)x[3+idx]; s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; v += 16; } v = aa + ai16; x[idt] = (PetscScalar)(v[0]*s1 + v[4]*s2 + v[8]*s3 + v[12]*s4); x[1+idt] = (PetscScalar)(v[1]*s1 + v[5]*s2 + v[9]*s3 + v[13]*s4); x[2+idt] = (PetscScalar)(v[2]*s1 + v[6]*s2 + v[10]*s3 + v[14]*s4); x[3+idt] = (PetscScalar)(v[3]*s1 + v[7]*s2 + v[11]*s3 + v[15]*s4); idt -= 4; } } ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*16*(a->nz) - 4.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #if defined (PETSC_HAVE_SSE) #include PETSC_HAVE_SSE #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_4_NaturalOrdering_SSE_Demotion_usj" PetscErrorCode MatSolve_SeqBAIJ_4_NaturalOrdering_SSE_Demotion_usj(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; unsigned short *aj=(unsigned short *)a->j; PetscErrorCode ierr; int *ai=a->i,n=a->mbs,*diag = a->diag; MatScalar *aa=a->a; PetscScalar *x,*b; PetscFunctionBegin; SSE_SCOPE_BEGIN; /* Note: This code currently uses demotion of double to float when performing the mixed-mode computation. This may not be numerically reasonable for all applications. */ PREFETCH_NTA(aa+16*ai[1]); ierr = VecGetArray(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); { /* x will first be computed in single precision then promoted inplace to double */ MatScalar *v,*t=(MatScalar *)x; int nz,i,idt,ai16; unsigned int jdx,idx; unsigned short *vi; /* Forward solve the lower triangular factor. */ /* First block is the identity. */ idx = 0; CONVERT_DOUBLE4_FLOAT4(t,b); v = aa + 16*((unsigned int)ai[1]); for (i=1; i=0;) { PREFETCH_NTA(&v[8]); vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; LOAD_PS(&t[idt],XMM7); while (nz--) { PREFETCH_NTA(&v[16]); idx = 4*((unsigned int)(*vi++)); /* 4x4 Matrix-Vector Product with negative accumulation: */ SSE_INLINE_BEGIN_2(&t[idx],v) SSE_LOAD_PS(SSE_ARG_1,FLOAT_0,XMM6) /* First Column */ SSE_COPY_PS(XMM0,XMM6) SSE_SHUFFLE(XMM0,XMM0,0x00) SSE_MULT_PS_M(XMM0,SSE_ARG_2,FLOAT_0) SSE_SUB_PS(XMM7,XMM0) /* Second Column */ SSE_COPY_PS(XMM1,XMM6) SSE_SHUFFLE(XMM1,XMM1,0x55) SSE_MULT_PS_M(XMM1,SSE_ARG_2,FLOAT_4) SSE_SUB_PS(XMM7,XMM1) SSE_PREFETCH_NTA(SSE_ARG_2,FLOAT_24) /* Third Column */ SSE_COPY_PS(XMM2,XMM6) SSE_SHUFFLE(XMM2,XMM2,0xAA) SSE_MULT_PS_M(XMM2,SSE_ARG_2,FLOAT_8) SSE_SUB_PS(XMM7,XMM2) /* Fourth Column */ SSE_COPY_PS(XMM3,XMM6) SSE_SHUFFLE(XMM3,XMM3,0xFF) SSE_MULT_PS_M(XMM3,SSE_ARG_2,FLOAT_12) SSE_SUB_PS(XMM7,XMM3) SSE_INLINE_END_2 v += 16; } v = aa + ai16; ai16 = 16*diag[--i]; PREFETCH_NTA(aa+ai16+16); /* Scale the result by the diagonal 4x4 block, which was inverted as part of the factorization */ SSE_INLINE_BEGIN_3(v,&t[idt],aa+ai16) /* First Column */ SSE_COPY_PS(XMM0,XMM7) SSE_SHUFFLE(XMM0,XMM0,0x00) SSE_MULT_PS_M(XMM0,SSE_ARG_1,FLOAT_0) /* Second Column */ SSE_COPY_PS(XMM1,XMM7) SSE_SHUFFLE(XMM1,XMM1,0x55) SSE_MULT_PS_M(XMM1,SSE_ARG_1,FLOAT_4) SSE_ADD_PS(XMM0,XMM1) SSE_PREFETCH_NTA(SSE_ARG_3,FLOAT_24) /* Third Column */ SSE_COPY_PS(XMM2,XMM7) SSE_SHUFFLE(XMM2,XMM2,0xAA) SSE_MULT_PS_M(XMM2,SSE_ARG_1,FLOAT_8) SSE_ADD_PS(XMM0,XMM2) /* Fourth Column */ SSE_COPY_PS(XMM3,XMM7) SSE_SHUFFLE(XMM3,XMM3,0xFF) SSE_MULT_PS_M(XMM3,SSE_ARG_1,FLOAT_12) SSE_ADD_PS(XMM0,XMM3) SSE_STORE_PS(SSE_ARG_2,FLOAT_0,XMM0) SSE_INLINE_END_3 v = aa + ai16 + 16; idt -= 4; } /* Convert t from single precision back to double precision (inplace)*/ idt = 4*(n-1); for (i=n-1;i>=0;i--) { /* CONVERT_FLOAT4_DOUBLE4(&x[idt],&t[idt]); */ /* Unfortunately, CONVERT_ will count from 0 to 3 which doesn't work here. */ PetscScalar *xtemp=&x[idt]; MatScalar *ttemp=&t[idt]; xtemp[3] = (PetscScalar)ttemp[3]; xtemp[2] = (PetscScalar)ttemp[2]; xtemp[1] = (PetscScalar)ttemp[1]; xtemp[0] = (PetscScalar)ttemp[0]; idt -= 4; } } /* End of artificial scope. */ ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*16*(a->nz) - 4.0*A->cmap->n);CHKERRQ(ierr); SSE_SCOPE_END; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_4_NaturalOrdering_SSE_Demotion" PetscErrorCode MatSolve_SeqBAIJ_4_NaturalOrdering_SSE_Demotion(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; int *aj=a->j; PetscErrorCode ierr; int *ai=a->i,n=a->mbs,*diag = a->diag; MatScalar *aa=a->a; PetscScalar *x,*b; PetscFunctionBegin; SSE_SCOPE_BEGIN; /* Note: This code currently uses demotion of double to float when performing the mixed-mode computation. This may not be numerically reasonable for all applications. */ PREFETCH_NTA(aa+16*ai[1]); ierr = VecGetArray(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); { /* x will first be computed in single precision then promoted inplace to double */ MatScalar *v,*t=(MatScalar *)x; int nz,i,idt,ai16; int jdx,idx; int *vi; /* Forward solve the lower triangular factor. */ /* First block is the identity. */ idx = 0; CONVERT_DOUBLE4_FLOAT4(t,b); v = aa + 16*ai[1]; for (i=1; i=0;) { PREFETCH_NTA(&v[8]); vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; LOAD_PS(&t[idt],XMM7); while (nz--) { PREFETCH_NTA(&v[16]); idx = 4*(*vi++); /* idx = *vi++; */ /* 4x4 Matrix-Vector Product with negative accumulation: */ SSE_INLINE_BEGIN_2(&t[idx],v) SSE_LOAD_PS(SSE_ARG_1,FLOAT_0,XMM6) /* First Column */ SSE_COPY_PS(XMM0,XMM6) SSE_SHUFFLE(XMM0,XMM0,0x00) SSE_MULT_PS_M(XMM0,SSE_ARG_2,FLOAT_0) SSE_SUB_PS(XMM7,XMM0) /* Second Column */ SSE_COPY_PS(XMM1,XMM6) SSE_SHUFFLE(XMM1,XMM1,0x55) SSE_MULT_PS_M(XMM1,SSE_ARG_2,FLOAT_4) SSE_SUB_PS(XMM7,XMM1) SSE_PREFETCH_NTA(SSE_ARG_2,FLOAT_24) /* Third Column */ SSE_COPY_PS(XMM2,XMM6) SSE_SHUFFLE(XMM2,XMM2,0xAA) SSE_MULT_PS_M(XMM2,SSE_ARG_2,FLOAT_8) SSE_SUB_PS(XMM7,XMM2) /* Fourth Column */ SSE_COPY_PS(XMM3,XMM6) SSE_SHUFFLE(XMM3,XMM3,0xFF) SSE_MULT_PS_M(XMM3,SSE_ARG_2,FLOAT_12) SSE_SUB_PS(XMM7,XMM3) SSE_INLINE_END_2 v += 16; } v = aa + ai16; ai16 = 16*diag[--i]; PREFETCH_NTA(aa+ai16+16); /* Scale the result by the diagonal 4x4 block, which was inverted as part of the factorization */ SSE_INLINE_BEGIN_3(v,&t[idt],aa+ai16) /* First Column */ SSE_COPY_PS(XMM0,XMM7) SSE_SHUFFLE(XMM0,XMM0,0x00) SSE_MULT_PS_M(XMM0,SSE_ARG_1,FLOAT_0) /* Second Column */ SSE_COPY_PS(XMM1,XMM7) SSE_SHUFFLE(XMM1,XMM1,0x55) SSE_MULT_PS_M(XMM1,SSE_ARG_1,FLOAT_4) SSE_ADD_PS(XMM0,XMM1) SSE_PREFETCH_NTA(SSE_ARG_3,FLOAT_24) /* Third Column */ SSE_COPY_PS(XMM2,XMM7) SSE_SHUFFLE(XMM2,XMM2,0xAA) SSE_MULT_PS_M(XMM2,SSE_ARG_1,FLOAT_8) SSE_ADD_PS(XMM0,XMM2) /* Fourth Column */ SSE_COPY_PS(XMM3,XMM7) SSE_SHUFFLE(XMM3,XMM3,0xFF) SSE_MULT_PS_M(XMM3,SSE_ARG_1,FLOAT_12) SSE_ADD_PS(XMM0,XMM3) SSE_STORE_PS(SSE_ARG_2,FLOAT_0,XMM0) SSE_INLINE_END_3 v = aa + ai16 + 16; idt -= 4; } /* Convert t from single precision back to double precision (inplace)*/ idt = 4*(n-1); for (i=n-1;i>=0;i--) { /* CONVERT_FLOAT4_DOUBLE4(&x[idt],&t[idt]); */ /* Unfortunately, CONVERT_ will count from 0 to 3 which doesn't work here. */ PetscScalar *xtemp=&x[idt]; MatScalar *ttemp=&t[idt]; xtemp[3] = (PetscScalar)ttemp[3]; xtemp[2] = (PetscScalar)ttemp[2]; xtemp[1] = (PetscScalar)ttemp[1]; xtemp[0] = (PetscScalar)ttemp[0]; idt -= 4; } } /* End of artificial scope. */ ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*16*(a->nz) - 4.0*A->cmap->n);CHKERRQ(ierr); SSE_SCOPE_END; PetscFunctionReturn(0); } #endif #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_3_inplace" PetscErrorCode MatSolve_SeqBAIJ_3_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,idc; const PetscInt *r,*c,*diag = a->diag,*rout,*cout; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,x1,x2,x3,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ idx = 3*(*r++); t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; for (i=1; i=0; i--) { v = aa + 9*diag[i] + 9; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 3*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; while (nz--) { idx = 3*(*vi++); x1 = t[idx]; x2 = t[1+idx]; x3 = t[2+idx]; s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; v += 9; } idc = 3*(*c--); v = aa + 9*diag[i]; x[idc] = t[idt] = v[0]*s1 + v[3]*s2 + v[6]*s3; x[1+idc] = t[1+idt] = v[1]*s1 + v[4]*s2 + v[7]*s3; x[2+idc] = t[2+idt] = v[2]*s1 + v[5]*s2 + v[8]*s3; } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*9*(a->nz) - 3.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_3" PetscErrorCode MatSolve_SeqBAIJ_3(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscInt i,nz,idx,idt,idc,m; const PetscInt *r,*c,*rout,*cout; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,x1,x2,x3,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* forward solve the lower triangular */ idx = 3*r[0]; t[0] = b[idx]; t[1] = b[1+idx]; t[2] = b[2+idx]; for (i=1; i=0; i--) { v = aa + 9*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1] - 1; idt = 3*i; s1 = t[idt]; s2 = t[1+idt]; s3 = t[2+idt]; for (m=0;mnz) - 3.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Special case where the matrix was ILU(0) factored in the natural ordering. This eliminates the need for the column and row permutation. */ #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_3_NaturalOrdering_inplace" PetscErrorCode MatSolve_SeqBAIJ_3_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*ai=a->i,*aj=a->j; PetscErrorCode ierr; const PetscInt *diag = a->diag,*vi; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,s3,x1,x2,x3; const PetscScalar *b; PetscInt jdx,idt,idx,nz,i; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[0]; x[1] = b[1]; x[2] = b[2]; for (i=1; i=0; i--) { v = aa + 9*diag[i] + 9; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 3*i; s1 = x[idt]; s2 = x[1+idt]; s3 = x[2+idt]; while (nz--) { idx = 3*(*vi++); x1 = x[idx]; x2 = x[1+idx];x3 = x[2+idx]; s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; v += 9; } v = aa + 9*diag[i]; x[idt] = v[0]*s1 + v[3]*s2 + v[6]*s3; x[1+idt] = v[1]*s1 + v[4]*s2 + v[7]*s3; x[2+idt] = v[2]*s1 + v[5]*s2 + v[8]*s3; } ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*9*(a->nz) - 3.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_3_NaturalOrdering" PetscErrorCode MatSolve_SeqBAIJ_3_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscErrorCode ierr; PetscInt i,k,nz,idx,jdx,idt; const PetscInt bs = A->rmap->bs,bs2 = a->bs2; const MatScalar *aa=a->a,*v; PetscScalar *x; const PetscScalar *b; PetscScalar s1,s2,s3,x1,x2,x3; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx];x[2] = b[2+idx]; for (i=1; i=0; i--) { v = aa + bs2*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1]-1; idt = bs*i; s1 = x[idt]; s2 = x[1+idt];s3 = x[2+idt]; for (k=0;knz) - bs*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_2_inplace" PetscErrorCode MatSolve_SeqBAIJ_2_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz,idx,idt,idc; const PetscInt *r,*c,*diag = a->diag,*rout,*cout; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,x1,x2,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ idx = 2*(*r++); t[0] = b[idx]; t[1] = b[1+idx]; for (i=1; i=0; i--) { v = aa + 4*diag[i] + 4; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 2*i; s1 = t[idt]; s2 = t[1+idt]; while (nz--) { idx = 2*(*vi++); x1 = t[idx]; x2 = t[1+idx]; s1 -= v[0]*x1 + v[2]*x2; s2 -= v[1]*x1 + v[3]*x2; v += 4; } idc = 2*(*c--); v = aa + 4*diag[i]; x[idc] = t[idt] = v[0]*s1 + v[2]*s2; x[1+idc] = t[1+idt] = v[1]*s1 + v[3]*s2; } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*4*(a->nz) - 2.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_2" PetscErrorCode MatSolve_SeqBAIJ_2(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscInt i,nz,idx,jdx,idt,idc,m; const PetscInt *r,*c,*rout,*cout; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,x1,x2,*t; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* forward solve the lower triangular */ idx = 2*r[0]; t[0] = b[idx]; t[1] = b[1+idx]; for (i=1; i=0; i--) { v = aa + 4*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1] - 1; idt = 2*i; s1 = t[idt]; s2 = t[1+idt]; for (m=0;mnz) - 2.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Special case where the matrix was ILU(0) factored in the natural ordering. This eliminates the need for the column and row permutation. */ #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_2_NaturalOrdering_inplace" PetscErrorCode MatSolve_SeqBAIJ_2_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; PetscErrorCode ierr; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,x1,x2; const PetscScalar *b; PetscInt jdx,idt,idx,nz,i; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[0]; x[1] = b[1]; for (i=1; i=0; i--) { v = aa + 4*diag[i] + 4; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = 2*i; s1 = x[idt]; s2 = x[1+idt]; while (nz--) { idx = 2*(*vi++); x1 = x[idx]; x2 = x[1+idx]; s1 -= v[0]*x1 + v[2]*x2; s2 -= v[1]*x1 + v[3]*x2; v += 4; } v = aa + 4*diag[i]; x[idt] = v[0]*s1 + v[2]*s2; x[1+idt] = v[1]*s1 + v[3]*s2; } ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*4*(a->nz) - 2.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_2_NaturalOrdering" PetscErrorCode MatSolve_SeqBAIJ_2_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag=a->diag; PetscInt i,k,nz,idx,idt,jdx; PetscErrorCode ierr; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,s2,x1,x2; const PetscScalar *b; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[idx]; x[1] = b[1+idx]; for (i=1; i=0; i--) { v = aa + 4*(adiag[i+1]+1); vi = aj + adiag[i+1]+1; nz = adiag[i] - adiag[i+1]-1; idt = 2*i; s1 = x[idt]; s2 = x[1+idt]; PetscPrefetchBlock(vi+nz,nz,0,PETSC_PREFETCH_HINT_NTA); PetscPrefetchBlock(v+4*nz,4*nz,0,PETSC_PREFETCH_HINT_NTA); for (k=0;knz) - 2.0*A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_1_inplace" PetscErrorCode MatSolve_SeqBAIJ_1_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; IS iscol=a->col,isrow=a->row; PetscErrorCode ierr; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j; PetscInt i,nz; const PetscInt *r,*c,*diag = a->diag,*rout,*cout; const MatScalar *aa=a->a,*v; PetscScalar *x,s1,*t; const PetscScalar *b; PetscFunctionBegin; if (!n) PetscFunctionReturn(0); ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); t = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1); /* forward solve the lower triangular */ t[0] = b[*r++]; for (i=1; i=0; i--) { v = aa + diag[i] + 1; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; s1 = t[i]; while (nz--) { s1 -= (*v++)*t[*vi++]; } x[*c--] = t[i] = aa[diag[i]]*s1; } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*1*(a->nz) - A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_1" PetscErrorCode MatSolve_SeqBAIJ_1(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; IS iscol = a->col,isrow = a->row; PetscErrorCode ierr; PetscInt i,n=a->mbs,*vi,*ai=a->i,*aj=a->j,*adiag = a->diag,nz; const PetscInt *rout,*cout,*r,*c; PetscScalar *x,*tmp,sum; const PetscScalar *b; const MatScalar *aa = a->a,*v; PetscFunctionBegin; if (!n) PetscFunctionReturn(0); ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); tmp = a->solve_work; ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout; ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout; /* forward solve the lower triangular */ tmp[0] = b[r[0]]; v = aa; vi = aj; for (i=1; i=0; i--) { v = aa + adiag[i+1]+1; vi = aj + adiag[i+1]+1; nz = adiag[i]-adiag[i+1]-1; sum = tmp[i]; PetscSparseDenseMinusDot(sum,tmp,v,vi,nz); x[c[i]] = tmp[i] = sum*v[nz]; /* v[nz] = aa[adiag[i]] */ } ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr); ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2*a->nz - A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Special case where the matrix was ILU(0) factored in the natural ordering. This eliminates the need for the column and row permutation. */ #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_1_NaturalOrdering_inplace" PetscErrorCode MatSolve_SeqBAIJ_1_NaturalOrdering_inplace(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; const PetscInt n=a->mbs,*vi,*ai=a->i,*aj=a->j,*diag=a->diag; PetscErrorCode ierr; const MatScalar *aa=a->a,*v; PetscScalar *x; const PetscScalar *b; PetscScalar s1,x1; PetscInt jdx,idt,idx,nz,i; PetscFunctionBegin; ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ idx = 0; x[0] = b[0]; for (i=1; i=0; i--) { v = aa + diag[i] + 1; vi = aj + diag[i] + 1; nz = ai[i+1] - diag[i] - 1; idt = i; s1 = x[idt]; while (nz--) { idx = *vi++; x1 = x[idx]; s1 -= v[0]*x1; v += 1; } v = aa + diag[i]; x[idt] = v[0]*s1; } ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = PetscLogFlops(2.0*(a->nz) - A->cmap->n);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSolve_SeqBAIJ_1_NaturalOrdering" PetscErrorCode MatSolve_SeqBAIJ_1_NaturalOrdering(Mat A,Vec bb,Vec xx) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; PetscErrorCode ierr; const PetscInt n = a->mbs,*ai = a->i,*aj = a->j,*adiag = a->diag,*vi; PetscScalar *x,sum; const PetscScalar *b; const MatScalar *aa = a->a,*v; PetscInt i,nz; PetscFunctionBegin; if (!n) PetscFunctionReturn(0); ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); /* forward solve the lower triangular */ x[0] = b[0]; v = aa; vi = aj; for (i=1; i=0; i--) { v = aa + adiag[i+1] + 1; vi = aj + adiag[i+1] + 1; nz = adiag[i] - adiag[i+1]-1; sum = x[i]; PetscSparseDenseMinusDot(sum,x,v,vi,nz); x[i] = sum*v[nz]; /* x[i]=aa[adiag[i]]*sum; v++; */ } ierr = PetscLogFlops(2.0*a->nz - A->cmap->n);CHKERRQ(ierr); ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ----------------------------------------------------------------*/ extern PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat,Mat,MatDuplicateOption,PetscBool); #undef __FUNCT__ #define __FUNCT__ "MatLUFactorNumeric_SeqBAIJ_15_NaturalOrdering" /* This is not much faster than MatLUFactorNumeric_SeqBAIJ_N() but the solve is faster at least sometimes */ PetscErrorCode MatLUFactorNumeric_SeqBAIJ_15_NaturalOrdering(Mat B,Mat A,const MatFactorInfo *info) { Mat C=B; Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ *)C->data; PetscErrorCode ierr; PetscInt i,j,k,ipvt[15]; const PetscInt n=a->mbs,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*ajtmp,*bjtmp,*bdiag=b->diag,*pj; PetscInt nz,nzL,row; MatScalar *rtmp,*pc,*mwork,*pv,*vv,work[225]; const MatScalar *v,*aa=a->a; PetscInt bs2 = a->bs2,bs=A->rmap->bs,flg; PetscInt sol_ver; PetscFunctionBegin; ierr = PetscOptionsGetInt(((PetscObject)A)->prefix,"-sol_ver",&sol_ver,PETSC_NULL);CHKERRQ(ierr); /* generate work space needed by the factorization */ ierr = PetscMalloc2(bs2*n,MatScalar,&rtmp,bs2,MatScalar,&mwork);CHKERRQ(ierr); ierr = PetscMemzero(rtmp,bs2*n*sizeof(MatScalar));CHKERRQ(ierr); for (i=0; ia + bs2*bdiag[row]; PetscKernel_A_gets_A_times_B(bs,pc,pv,mwork); /*ierr = PetscKernel_A_gets_A_times_B_15(pc,pv,mwork);CHKERRQ(ierr);*/ pj = b->j + bdiag[row+1]+1; /* begining of U(row,:) */ pv = b->a + bs2*(bdiag[row+1]+1); nz = bdiag[row] - bdiag[row+1] - 1; /* num of entries inU(row,:), excluding diag */ for (j=0; ja */ /* L part */ pv = b->a + bs2*bi[i] ; pj = b->j + bi[i] ; nz = bi[i+1] - bi[i]; for (j=0; ja + bs2*bdiag[i]; pj = b->j + bdiag[i]; ierr = PetscMemcpy(pv,rtmp+bs2*pj[0],bs2*sizeof(MatScalar));CHKERRQ(ierr); /* PetscKernel_A_gets_inverse_A(bs,pv,pivots,work); */ ierr = PetscKernel_A_gets_inverse_A_15(pv,ipvt,work,info->shiftamount);CHKERRQ(ierr); /* U part */ pv = b->a + bs2*(bdiag[i+1]+1); pj = b->j + bdiag[i+1]+1; nz = bdiag[i] - bdiag[i+1] - 1; for (j=0; jops->solve = MatSolve_SeqBAIJ_15_NaturalOrdering_ver1; C->ops->solvetranspose = MatSolve_SeqBAIJ_N_NaturalOrdering; C->assembled = PETSC_TRUE; ierr = PetscLogFlops(1.333333333333*bs*bs2*b->mbs);CHKERRQ(ierr); /* from inverting diagonal blocks */ PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatLUFactorNumeric_SeqBAIJ_N" PetscErrorCode MatLUFactorNumeric_SeqBAIJ_N(Mat B,Mat A,const MatFactorInfo *info) { Mat C=B; Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ *)C->data; IS isrow = b->row,isicol = b->icol; PetscErrorCode ierr; const PetscInt *r,*ic; PetscInt i,j,k,n=a->mbs,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; PetscInt *ajtmp,*bjtmp,nz,nzL,row,*bdiag=b->diag,*pj; MatScalar *rtmp,*pc,*mwork,*v,*pv,*aa=a->a; PetscInt bs=A->rmap->bs,bs2 = a->bs2,*v_pivots,flg; MatScalar *v_work; PetscBool col_identity,row_identity,both_identity; PetscFunctionBegin; ierr = ISGetIndices(isrow,&r);CHKERRQ(ierr); ierr = ISGetIndices(isicol,&ic);CHKERRQ(ierr); ierr = PetscMalloc(bs2*n*sizeof(MatScalar),&rtmp);CHKERRQ(ierr); ierr = PetscMemzero(rtmp,bs2*n*sizeof(MatScalar));CHKERRQ(ierr); /* generate work space needed by dense LU factorization */ ierr = PetscMalloc3(bs,MatScalar,&v_work,bs2,MatScalar,&mwork,bs,PetscInt,&v_pivots);CHKERRQ(ierr); for (i=0; ia + bs2*bdiag[row]; PetscKernel_A_gets_A_times_B(bs,pc,pv,mwork); /* *pc = *pc * (*pv); */ pj = b->j + bdiag[row+1]+1; /* begining of U(row,:) */ pv = b->a + bs2*(bdiag[row+1]+1); nz = bdiag[row] - bdiag[row+1] - 1; /* num of entries inU(row,:), excluding diag */ for (j=0; ja */ /* L part */ pv = b->a + bs2*bi[i] ; pj = b->j + bi[i] ; nz = bi[i+1] - bi[i]; for (j=0; ja + bs2*bdiag[i]; pj = b->j + bdiag[i]; /* if (*pj != i)SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"row %d != *pj %d",i,*pj); */ ierr = PetscMemcpy(pv,rtmp+bs2*pj[0],bs2*sizeof(MatScalar));CHKERRQ(ierr); ierr = PetscKernel_A_gets_inverse_A(bs,pv,v_pivots,v_work);CHKERRQ(ierr); /* U part */ pv = b->a + bs2*(bdiag[i+1]+1); pj = b->j + bdiag[i+1]+1; nz = bdiag[i] - bdiag[i+1] - 1; for (j=0; jops->solve = MatSolve_SeqBAIJ_N_NaturalOrdering; } else { C->ops->solve = MatSolve_SeqBAIJ_N; } C->ops->solvetranspose = MatSolveTranspose_SeqBAIJ_N; C->assembled = PETSC_TRUE; ierr = PetscLogFlops(1.333333333333*bs*bs2*b->mbs);CHKERRQ(ierr); /* from inverting diagonal blocks */ PetscFunctionReturn(0); } /* ilu(0) with natural ordering under new data structure. See MatILUFactorSymbolic_SeqAIJ_ilu0() for detailed description because this code is almost identical to MatILUFactorSymbolic_SeqAIJ_ilu0_inplace(). */ #undef __FUNCT__ #define __FUNCT__ "MatILUFactorSymbolic_SeqBAIJ_ilu0" PetscErrorCode MatILUFactorSymbolic_SeqBAIJ_ilu0(Mat fact,Mat A,IS isrow,IS iscol,const MatFactorInfo *info) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b; PetscErrorCode ierr; PetscInt n=a->mbs,*ai=a->i,*aj,*adiag=a->diag,bs2 = a->bs2; PetscInt i,j,nz,*bi,*bj,*bdiag,bi_temp; PetscFunctionBegin; ierr = MatDuplicateNoCreate_SeqBAIJ(fact,A,MAT_DO_NOT_COPY_VALUES,PETSC_FALSE);CHKERRQ(ierr); b = (Mat_SeqBAIJ*)(fact)->data; /* allocate matrix arrays for new data structure */ ierr = PetscMalloc3(bs2*ai[n]+1,PetscScalar,&b->a,ai[n]+1,PetscInt,&b->j,n+1,PetscInt,&b->i);CHKERRQ(ierr); ierr = PetscLogObjectMemory(fact,ai[n]*(bs2*sizeof(PetscScalar)+sizeof(PetscInt))+(n+1)*sizeof(PetscInt));CHKERRQ(ierr); b->singlemalloc = PETSC_TRUE; b->free_a = PETSC_TRUE; b->free_ij = PETSC_TRUE; fact->preallocated = PETSC_TRUE; fact->assembled = PETSC_TRUE; if (!b->diag) { ierr = PetscMalloc((n+1)*sizeof(PetscInt),&b->diag);CHKERRQ(ierr); ierr = PetscLogObjectMemory(fact,(n+1)*sizeof(PetscInt));CHKERRQ(ierr); } bdiag = b->diag; if (n > 0) { ierr = PetscMemzero(b->a,bs2*ai[n]*sizeof(MatScalar));CHKERRQ(ierr); } /* set bi and bj with new data structure */ bi = b->i; bj = b->j; /* L part */ bi[0] = 0; for (i=0; ij + ai[i]; for (j=0; j=0; i--) { nz = ai[i+1] - adiag[i] - 1; bi_temp = bi_temp + nz + 1; aj = a->j + adiag[i] + 1; for (j=0; jdata,*b; IS isicol; PetscErrorCode ierr; const PetscInt *r,*ic; PetscInt n=a->mbs,*ai=a->i,*aj=a->j,d; PetscInt *bi,*cols,nnz,*cols_lvl; PetscInt *bdiag,prow,fm,nzbd,reallocs=0,dcount=0; PetscInt i,levels,diagonal_fill; PetscBool col_identity,row_identity,both_identity; PetscReal f; PetscInt nlnk,*lnk,*lnk_lvl=PETSC_NULL; PetscBT lnkbt; PetscInt nzi,*bj,**bj_ptr,**bjlvl_ptr; PetscFreeSpaceList free_space=PETSC_NULL,current_space=PETSC_NULL; PetscFreeSpaceList free_space_lvl=PETSC_NULL,current_space_lvl=PETSC_NULL; PetscBool missing; PetscInt bs=A->rmap->bs,bs2=a->bs2; PetscFunctionBegin; if (A->rmap->n != A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Must be square matrix, rows %D columns %D",A->rmap->n,A->cmap->n); if (bs>1) { /* check shifttype */ if (info->shifttype == MAT_SHIFT_NONZERO || info->shifttype == MAT_SHIFT_POSITIVE_DEFINITE) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only MAT_SHIFT_NONE and MAT_SHIFT_INBLOCKS are supported for BAIJ matrix"); } ierr = MatMissingDiagonal(A,&missing,&d);CHKERRQ(ierr); if (missing) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix is missing diagonal entry %D",d); f = info->fill; levels = (PetscInt)info->levels; diagonal_fill = (PetscInt)info->diagonal_fill; ierr = ISInvertPermutation(iscol,PETSC_DECIDE,&isicol);CHKERRQ(ierr); ierr = ISIdentity(isrow,&row_identity);CHKERRQ(ierr); ierr = ISIdentity(iscol,&col_identity);CHKERRQ(ierr); both_identity = (PetscBool) (row_identity && col_identity); if (!levels && both_identity) { /* special case: ilu(0) with natural ordering */ ierr = MatILUFactorSymbolic_SeqBAIJ_ilu0(fact,A,isrow,iscol,info);CHKERRQ(ierr); ierr = MatSeqBAIJSetNumericFactorization(fact,both_identity);CHKERRQ(ierr); fact->factortype = MAT_FACTOR_ILU; (fact)->info.factor_mallocs = 0; (fact)->info.fill_ratio_given = info->fill; (fact)->info.fill_ratio_needed = 1.0; b = (Mat_SeqBAIJ*)(fact)->data; b->row = isrow; b->col = iscol; b->icol = isicol; ierr = PetscObjectReference((PetscObject)isrow);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)iscol);CHKERRQ(ierr); b->pivotinblocks = (info->pivotinblocks) ? PETSC_TRUE : PETSC_FALSE; ierr = PetscMalloc((n+1)*bs*sizeof(PetscScalar),&b->solve_work);CHKERRQ(ierr); PetscFunctionReturn(0); } ierr = ISGetIndices(isrow,&r);CHKERRQ(ierr); ierr = ISGetIndices(isicol,&ic);CHKERRQ(ierr); /* get new row pointers */ ierr = PetscMalloc((n+1)*sizeof(PetscInt),&bi);CHKERRQ(ierr); bi[0] = 0; /* bdiag is location of diagonal in factor */ ierr = PetscMalloc((n+1)*sizeof(PetscInt),&bdiag);CHKERRQ(ierr); bdiag[0] = 0; ierr = PetscMalloc2(n,PetscInt*,&bj_ptr,n,PetscInt*,&bjlvl_ptr);CHKERRQ(ierr); /* create a linked list for storing column indices of the active row */ nlnk = n + 1; ierr = PetscIncompleteLLCreate(n,n,nlnk,lnk,lnk_lvl,lnkbt);CHKERRQ(ierr); /* initial FreeSpace size is f*(ai[n]+1) */ ierr = PetscFreeSpaceGet((PetscInt)(f*(ai[n]+1)),&free_space);CHKERRQ(ierr); current_space = free_space; ierr = PetscFreeSpaceGet((PetscInt)(f*(ai[n]+1)),&free_space_lvl);CHKERRQ(ierr); current_space_lvl = free_space_lvl; for (i=0; ilocal_remainingarray,current_space_lvl->array,lnkbt);CHKERRQ(ierr); bj_ptr[i] = current_space->array; bjlvl_ptr[i] = current_space_lvl->array; /* make sure the active row i has diagonal entry */ if (*(bj_ptr[i]+bdiag[i]) != i) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Row %D has missing diagonal in factored matrix\ntry running with -pc_factor_nonzeros_along_diagonal or -pc_factor_diagonal_fill",i); current_space->array += nzi; current_space->local_used += nzi; current_space->local_remaining -= nzi; current_space_lvl->array += nzi; current_space_lvl->local_used += nzi; current_space_lvl->local_remaining -= nzi; } ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr); ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr); /* copy free_space into bj and free free_space; set bi, bj, bdiag in new datastructure; */ ierr = PetscMalloc((bi[n]+1)*sizeof(PetscInt),&bj);CHKERRQ(ierr); ierr = PetscFreeSpaceContiguous_LU(&free_space,bj,n,bi,bdiag);CHKERRQ(ierr); ierr = PetscIncompleteLLDestroy(lnk,lnkbt);CHKERRQ(ierr); ierr = PetscFreeSpaceDestroy(free_space_lvl);CHKERRQ(ierr); ierr = PetscFree2(bj_ptr,bjlvl_ptr);CHKERRQ(ierr); #if defined(PETSC_USE_INFO) { PetscReal af = ((PetscReal)(bdiag[0]+1))/((PetscReal)ai[n]); ierr = PetscInfo3(A,"Reallocs %D Fill ratio:given %G needed %G\n",reallocs,f,af);CHKERRQ(ierr); ierr = PetscInfo1(A,"Run with -[sub_]pc_factor_fill %G or use \n",af);CHKERRQ(ierr); ierr = PetscInfo1(A,"PCFactorSetFill([sub]pc,%G);\n",af);CHKERRQ(ierr); ierr = PetscInfo(A,"for best performance.\n");CHKERRQ(ierr); if (diagonal_fill) { ierr = PetscInfo1(A,"Detected and replaced %D missing diagonals",dcount);CHKERRQ(ierr); } } #endif /* put together the new matrix */ ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(fact,bs,MAT_SKIP_ALLOCATION,PETSC_NULL);CHKERRQ(ierr); ierr = PetscLogObjectParent(fact,isicol);CHKERRQ(ierr); b = (Mat_SeqBAIJ*)(fact)->data; b->free_a = PETSC_TRUE; b->free_ij = PETSC_TRUE; b->singlemalloc = PETSC_FALSE; ierr = PetscMalloc((bs2*(bdiag[0]+1))*sizeof(MatScalar),&b->a);CHKERRQ(ierr); b->j = bj; b->i = bi; b->diag = bdiag; b->free_diag = PETSC_TRUE; b->ilen = 0; b->imax = 0; b->row = isrow; b->col = iscol; ierr = PetscObjectReference((PetscObject)isrow);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)iscol);CHKERRQ(ierr); b->icol = isicol; ierr = PetscMalloc((bs*n+bs)*sizeof(PetscScalar),&b->solve_work);CHKERRQ(ierr); /* In b structure: Free imax, ilen, old a, old j. Allocate bdiag, solve_work, new a, new j */ ierr = PetscLogObjectMemory(fact,(bdiag[0]+1) * (sizeof(PetscInt)+bs2*sizeof(PetscScalar)));CHKERRQ(ierr); b->maxnz = b->nz = bdiag[0]+1; fact->info.factor_mallocs = reallocs; fact->info.fill_ratio_given = f; fact->info.fill_ratio_needed = ((PetscReal)(bdiag[0]+1))/((PetscReal)ai[n]); ierr = MatSeqBAIJSetNumericFactorization(fact,both_identity);CHKERRQ(ierr); PetscFunctionReturn(0); } /* This code is virtually identical to MatILUFactorSymbolic_SeqAIJ except that the data structure of Mat_SeqAIJ is slightly different. Not a good example of code reuse. */ #undef __FUNCT__ #define __FUNCT__ "MatILUFactorSymbolic_SeqBAIJ_inplace" PetscErrorCode MatILUFactorSymbolic_SeqBAIJ_inplace(Mat fact,Mat A,IS isrow,IS iscol,const MatFactorInfo *info) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b; IS isicol; PetscErrorCode ierr; const PetscInt *r,*ic,*ai = a->i,*aj = a->j,*xi; PetscInt prow,n = a->mbs,*ainew,*ajnew,jmax,*fill,nz,*im,*ajfill,*flev,*xitmp; PetscInt *dloc,idx,row,m,fm,nzf,nzi,reallocate = 0,dcount = 0; PetscInt incrlev,nnz,i,bs = A->rmap->bs,bs2 = a->bs2,levels,diagonal_fill,dd; PetscBool col_identity,row_identity,both_identity,flg; PetscReal f; PetscFunctionBegin; ierr = MatMissingDiagonal_SeqBAIJ(A,&flg,&dd);CHKERRQ(ierr); if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix A is missing diagonal entry in row %D",dd); f = info->fill; levels = (PetscInt)info->levels; diagonal_fill = (PetscInt)info->diagonal_fill; ierr = ISInvertPermutation(iscol,PETSC_DECIDE,&isicol);CHKERRQ(ierr); ierr = ISIdentity(isrow,&row_identity);CHKERRQ(ierr); ierr = ISIdentity(iscol,&col_identity);CHKERRQ(ierr); both_identity = (PetscBool) (row_identity && col_identity); if (!levels && both_identity) { /* special case copy the nonzero structure */ ierr = MatDuplicateNoCreate_SeqBAIJ(fact,A,MAT_DO_NOT_COPY_VALUES,PETSC_TRUE);CHKERRQ(ierr); ierr = MatSeqBAIJSetNumericFactorization_inplace(fact,both_identity);CHKERRQ(ierr); fact->factortype = MAT_FACTOR_ILU; b = (Mat_SeqBAIJ*)fact->data; b->row = isrow; b->col = iscol; ierr = PetscObjectReference((PetscObject)isrow);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)iscol);CHKERRQ(ierr); b->icol = isicol; b->pivotinblocks = (info->pivotinblocks) ? PETSC_TRUE : PETSC_FALSE; ierr = PetscMalloc((n+1)*bs*sizeof(PetscScalar),&b->solve_work);CHKERRQ(ierr); PetscFunctionReturn(0); } /* general case perform the symbolic factorization */ ierr = ISGetIndices(isrow,&r);CHKERRQ(ierr); ierr = ISGetIndices(isicol,&ic);CHKERRQ(ierr); /* get new row pointers */ ierr = PetscMalloc((n+1)*sizeof(PetscInt),&ainew);CHKERRQ(ierr); ainew[0] = 0; /* don't know how many column pointers are needed so estimate */ jmax = (PetscInt)(f*ai[n] + 1); ierr = PetscMalloc((jmax)*sizeof(PetscInt),&ajnew);CHKERRQ(ierr); /* ajfill is level of fill for each fill entry */ ierr = PetscMalloc((jmax)*sizeof(PetscInt),&ajfill);CHKERRQ(ierr); /* fill is a linked list of nonzeros in active row */ ierr = PetscMalloc((n+1)*sizeof(PetscInt),&fill);CHKERRQ(ierr); /* im is level for each filled value */ ierr = PetscMalloc((n+1)*sizeof(PetscInt),&im);CHKERRQ(ierr); /* dloc is location of diagonal in factor */ ierr = PetscMalloc((n+1)*sizeof(PetscInt),&dloc);CHKERRQ(ierr); dloc[0] = 0; for (prow=0; prow 0) { idx = *xi++; if (*flev + incrlev > levels) { flev++; continue; } do { m = fm; fm = fill[m]; } while (fm < idx); if (fm != idx) { im[idx] = *flev + incrlev; fill[m] = idx; fill[idx] = fm; fm = idx; nzf++; } else { if (im[idx] > *flev + incrlev) im[idx] = *flev+incrlev; } flev++; } row = fill[row]; nzi++; } /* copy new filled row into permanent storage */ ainew[prow+1] = ainew[prow] + nzf; if (ainew[prow+1] > jmax) { /* estimate how much additional space we will need */ /* use the strategy suggested by David Hysom */ /* just double the memory each time */ PetscInt maxadd = jmax; /* maxadd = (int)(((f*ai[n]+1)*(n-prow+5))/n); */ if (maxadd < nzf) maxadd = (n-prow)*(nzf+1); jmax += maxadd; /* allocate a longer ajnew and ajfill */ ierr = PetscMalloc(jmax*sizeof(PetscInt),&xitmp);CHKERRQ(ierr); ierr = PetscMemcpy(xitmp,ajnew,ainew[prow]*sizeof(PetscInt));CHKERRQ(ierr); ierr = PetscFree(ajnew);CHKERRQ(ierr); ajnew = xitmp; ierr = PetscMalloc(jmax*sizeof(PetscInt),&xitmp);CHKERRQ(ierr); ierr = PetscMemcpy(xitmp,ajfill,ainew[prow]*sizeof(PetscInt));CHKERRQ(ierr); ierr = PetscFree(ajfill);CHKERRQ(ierr); ajfill = xitmp; reallocate++; /* count how many reallocations are needed */ } xitmp = ajnew + ainew[prow]; flev = ajfill + ainew[prow]; dloc[prow] = nzi; fm = fill[n]; while (nzf--) { *xitmp++ = fm; *flev++ = im[fm]; fm = fill[fm]; } /* make sure row has diagonal entry */ if (ajnew[ainew[prow]+dloc[prow]] != prow) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Row %D has missing diagonal in factored matrix\n\ try running with -pc_factor_nonzeros_along_diagonal or -pc_factor_diagonal_fill",prow); } ierr = PetscFree(ajfill);CHKERRQ(ierr); ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr); ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr); ierr = PetscFree(fill);CHKERRQ(ierr); ierr = PetscFree(im);CHKERRQ(ierr); #if defined(PETSC_USE_INFO) { PetscReal af = ((PetscReal)ainew[n])/((PetscReal)ai[n]); ierr = PetscInfo3(A,"Reallocs %D Fill ratio:given %G needed %G\n",reallocate,f,af);CHKERRQ(ierr); ierr = PetscInfo1(A,"Run with -pc_factor_fill %G or use \n",af);CHKERRQ(ierr); ierr = PetscInfo1(A,"PCFactorSetFill(pc,%G);\n",af);CHKERRQ(ierr); ierr = PetscInfo(A,"for best performance.\n");CHKERRQ(ierr); if (diagonal_fill) { ierr = PetscInfo1(A,"Detected and replaced %D missing diagonals\n",dcount);CHKERRQ(ierr); } } #endif /* put together the new matrix */ ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(fact,bs,MAT_SKIP_ALLOCATION,PETSC_NULL);CHKERRQ(ierr); ierr = PetscLogObjectParent(fact,isicol);CHKERRQ(ierr); b = (Mat_SeqBAIJ*)fact->data; b->free_a = PETSC_TRUE; b->free_ij = PETSC_TRUE; b->singlemalloc = PETSC_FALSE; ierr = PetscMalloc(bs2*ainew[n]*sizeof(MatScalar),&b->a);CHKERRQ(ierr); b->j = ajnew; b->i = ainew; for (i=0; idiag = dloc; b->free_diag = PETSC_TRUE; b->ilen = 0; b->imax = 0; b->row = isrow; b->col = iscol; b->pivotinblocks = (info->pivotinblocks) ? PETSC_TRUE : PETSC_FALSE; ierr = PetscObjectReference((PetscObject)isrow);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)iscol);CHKERRQ(ierr); b->icol = isicol; ierr = PetscMalloc((bs*n+bs)*sizeof(PetscScalar),&b->solve_work);CHKERRQ(ierr); /* In b structure: Free imax, ilen, old a, old j. Allocate dloc, solve_work, new a, new j */ ierr = PetscLogObjectMemory(fact,(ainew[n]-n)*(sizeof(PetscInt))+bs2*ainew[n]*sizeof(PetscScalar));CHKERRQ(ierr); b->maxnz = b->nz = ainew[n]; fact->info.factor_mallocs = reallocate; fact->info.fill_ratio_given = f; fact->info.fill_ratio_needed = ((PetscReal)ainew[n])/((PetscReal)ai[prow]); ierr = MatSeqBAIJSetNumericFactorization_inplace(fact,both_identity);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSetUnfactored_SeqBAIJ_4_NaturalOrdering_SSE" PetscErrorCode MatSetUnfactored_SeqBAIJ_4_NaturalOrdering_SSE(Mat A) { /* Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; */ /* int i,*AJ=a->j,nz=a->nz; */ PetscFunctionBegin; /* Undo Column scaling */ /* while (nz--) { */ /* AJ[i] = AJ[i]/4; */ /* } */ /* This should really invoke a push/pop logic, but we don't have that yet. */ A->ops->setunfactored = PETSC_NULL; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatSetUnfactored_SeqBAIJ_4_NaturalOrdering_SSE_usj" PetscErrorCode MatSetUnfactored_SeqBAIJ_4_NaturalOrdering_SSE_usj(Mat A) { Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; PetscInt *AJ=a->j,nz=a->nz; unsigned short *aj=(unsigned short *)AJ; PetscFunctionBegin; /* Is this really necessary? */ while (nz--) { AJ[nz] = (int)((unsigned int)aj[nz]); /* First extend, then convert to signed. */ } A->ops->setunfactored = PETSC_NULL; PetscFunctionReturn(0); }