#include /*I "petscmat.h" I*/ typedef struct { Mat A; /* sparse matrix */ Mat U,V; /* dense tall-skinny matrices */ Vec c; /* sequential vector containing the diagonal of C */ Vec work1,work2; /* sequential vectors that hold partial products */ PetscMPIInt nwork; /* length of work vectors */ Vec xl,yl; /* auxiliary sequential vectors for matmult operation */ } Mat_LRC; PetscErrorCode MatMult_LRC(Mat N,Vec x,Vec y) { Mat_LRC *Na = (Mat_LRC*)N->data; Mat Uloc,Vloc; PetscErrorCode ierr; PetscScalar *w1,*w2; const PetscScalar *a; PetscFunctionBegin; ierr = VecGetArrayRead(x,&a);CHKERRQ(ierr); ierr = VecPlaceArray(Na->xl,a);CHKERRQ(ierr); ierr = VecGetLocalVector(y,Na->yl);CHKERRQ(ierr); ierr = MatDenseGetLocalMatrix(Na->U,&Uloc);CHKERRQ(ierr); ierr = MatDenseGetLocalMatrix(Na->V,&Vloc);CHKERRQ(ierr); /* multiply the local part of V with the local part of x */ #if defined(PETSC_USE_COMPLEX) ierr = MatMultHermitianTranspose(Vloc,Na->xl,Na->work1);CHKERRQ(ierr); #else ierr = MatMultTranspose(Vloc,Na->xl,Na->work1);CHKERRQ(ierr); #endif /* form the sum of all the local multiplies: this is work2 = V'*x = sum_{all processors} work1 */ ierr = VecGetArray(Na->work1,&w1);CHKERRQ(ierr); ierr = VecGetArray(Na->work2,&w2);CHKERRQ(ierr); ierr = MPIU_Allreduce(w1,w2,Na->nwork,MPIU_SCALAR,MPIU_SUM,PetscObjectComm((PetscObject)N));CHKERRMPI(ierr); ierr = VecRestoreArray(Na->work1,&w1);CHKERRQ(ierr); ierr = VecRestoreArray(Na->work2,&w2);CHKERRQ(ierr); if (Na->c) { /* work2 = C*work2 */ ierr = VecPointwiseMult(Na->work2,Na->c,Na->work2);CHKERRQ(ierr); } if (Na->A) { /* form y = A*x */ ierr = MatMult(Na->A,x,y);CHKERRQ(ierr); /* multiply-add y = y + U*work2 */ ierr = MatMultAdd(Uloc,Na->work2,Na->yl,Na->yl);CHKERRQ(ierr); } else { /* multiply y = U*work2 */ ierr = MatMult(Uloc,Na->work2,Na->yl);CHKERRQ(ierr); } ierr = VecRestoreArrayRead(x,&a);CHKERRQ(ierr); ierr = VecResetArray(Na->xl);CHKERRQ(ierr); ierr = VecRestoreLocalVector(y,Na->yl);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatDestroy_LRC(Mat N) { Mat_LRC *Na = (Mat_LRC*)N->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = MatDestroy(&Na->A);CHKERRQ(ierr); ierr = MatDestroy(&Na->U);CHKERRQ(ierr); ierr = MatDestroy(&Na->V);CHKERRQ(ierr); ierr = VecDestroy(&Na->c);CHKERRQ(ierr); ierr = VecDestroy(&Na->work1);CHKERRQ(ierr); ierr = VecDestroy(&Na->work2);CHKERRQ(ierr); ierr = VecDestroy(&Na->xl);CHKERRQ(ierr); ierr = VecDestroy(&Na->yl);CHKERRQ(ierr); ierr = PetscFree(N->data);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)N,"MatLRCGetMats_C",0);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatLRCGetMats_LRC(Mat N,Mat *A,Mat *U,Vec *c,Mat *V) { Mat_LRC *Na = (Mat_LRC*)N->data; PetscFunctionBegin; if (A) *A = Na->A; if (U) *U = Na->U; if (c) *c = Na->c; if (V) *V = Na->V; PetscFunctionReturn(0); } /*@ MatLRCGetMats - Returns the constituents of an LRC matrix Collective on Mat Input Parameter: . N - matrix of type LRC Output Parameters: + A - the (sparse) matrix . U - first dense rectangular (tall and skinny) matrix . c - a sequential vector containing the diagonal of C - V - second dense rectangular (tall and skinny) matrix Note: The returned matrices need not be destroyed by the caller. Level: intermediate .seealso: MatCreateLRC() @*/ PetscErrorCode MatLRCGetMats(Mat N,Mat *A,Mat *U,Vec *c,Mat *V) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscUseMethod(N,"MatLRCGetMats_C",(Mat,Mat*,Mat*,Vec*,Mat*),(N,A,U,c,V));CHKERRQ(ierr); PetscFunctionReturn(0); } /*@ MatCreateLRC - Creates a new matrix object that behaves like A + U*C*V' Collective on Mat Input Parameters: + A - the (sparse) matrix (can be NULL) . U, V - two dense rectangular (tall and skinny) matrices - c - a sequential vector containing the diagonal of C (can be NULL) Output Parameter: . N - the matrix that represents A + U*C*V' Notes: The matrix A + U*C*V' is not formed! Rather the new matrix object performs the matrix-vector product by first multiplying by A and then adding the other term. C is a diagonal matrix (represented as a vector) of order k, where k is the number of columns of both U and V. If A is NULL then the new object behaves like a low-rank matrix U*C*V'. Use V=U (or V=NULL) for a symmetric low-rank correction, A + U*C*U'. If c is NULL then the low-rank correction is just U*V'. Level: intermediate .seealso: MatLRCGetMats() @*/ PetscErrorCode MatCreateLRC(Mat A,Mat U,Vec c,Mat V,Mat *N) { PetscErrorCode ierr; PetscBool match; PetscInt m,n,k,m1,n1,k1; Mat_LRC *Na; PetscFunctionBegin; if (A) PetscValidHeaderSpecific(A,MAT_CLASSID,1); PetscValidHeaderSpecific(U,MAT_CLASSID,2); if (c) PetscValidHeaderSpecific(c,VEC_CLASSID,3); if (V) PetscValidHeaderSpecific(V,MAT_CLASSID,4); else V=U; if (A) PetscCheckSameComm(A,1,U,2); PetscCheckSameComm(U,2,V,4); ierr = PetscObjectTypeCompareAny((PetscObject)U,&match,MATSEQDENSE,MATMPIDENSE,"");CHKERRQ(ierr); if (!match) SETERRQ(PetscObjectComm((PetscObject)U),PETSC_ERR_SUP,"Matrix U must be of type dense"); if (V) { ierr = PetscObjectTypeCompareAny((PetscObject)V,&match,MATSEQDENSE,MATMPIDENSE,"");CHKERRQ(ierr); if (!match) SETERRQ(PetscObjectComm((PetscObject)V),PETSC_ERR_SUP,"Matrix V must be of type dense"); } ierr = MatGetSize(U,NULL,&k);CHKERRQ(ierr); ierr = MatGetSize(V,NULL,&k1);CHKERRQ(ierr); if (k!=k1) SETERRQ2(PetscObjectComm((PetscObject)U),PETSC_ERR_ARG_INCOMP,"U and V have different number of columns (%D vs %D)",k,k1); ierr = MatGetLocalSize(U,&m,NULL);CHKERRQ(ierr); ierr = MatGetLocalSize(V,&n,NULL);CHKERRQ(ierr); if (A) { ierr = MatGetLocalSize(A,&m1,&n1);CHKERRQ(ierr); if (m!=m1) SETERRQ2(PetscObjectComm((PetscObject)U),PETSC_ERR_ARG_INCOMP,"Local dimensions of U %D and A %D do not match",m,m1); if (n!=n1) SETERRQ2(PetscObjectComm((PetscObject)V),PETSC_ERR_ARG_INCOMP,"Local dimensions of V %D and A %D do not match",n,n1); } if (c) { ierr = VecGetSize(c,&k1);CHKERRQ(ierr); if (k!=k1) SETERRQ2(PetscObjectComm((PetscObject)c),PETSC_ERR_ARG_INCOMP,"The length of c %D does not match the number of columns of U and V (%D)",k1,k); ierr = VecGetLocalSize(c,&k1);CHKERRQ(ierr); if (k!=k1) SETERRQ(PetscObjectComm((PetscObject)c),PETSC_ERR_ARG_INCOMP,"c must be a sequential vector"); } ierr = MatCreate(PetscObjectComm((PetscObject)U),N);CHKERRQ(ierr); ierr = MatSetSizes(*N,m,n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); ierr = PetscObjectChangeTypeName((PetscObject)*N,MATLRC);CHKERRQ(ierr); ierr = PetscNewLog(*N,&Na);CHKERRQ(ierr); (*N)->data = (void*)Na; Na->A = A; Na->U = U; Na->c = c; Na->V = V; if (A) { ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); } ierr = PetscObjectReference((PetscObject)Na->U);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)Na->V);CHKERRQ(ierr); if (c) { ierr = PetscObjectReference((PetscObject)c);CHKERRQ(ierr); } ierr = VecCreateSeq(PETSC_COMM_SELF,U->cmap->N,&Na->work1);CHKERRQ(ierr); ierr = VecDuplicate(Na->work1,&Na->work2);CHKERRQ(ierr); ierr = PetscMPIIntCast(U->cmap->N,&Na->nwork);CHKERRQ(ierr); ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,V->rmap->n,NULL,&Na->xl);CHKERRQ(ierr); ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,U->rmap->n,NULL,&Na->yl);CHKERRQ(ierr); (*N)->ops->destroy = MatDestroy_LRC; (*N)->ops->mult = MatMult_LRC; (*N)->assembled = PETSC_TRUE; (*N)->preallocated = PETSC_TRUE; (*N)->cmap->N = V->rmap->N; (*N)->rmap->N = U->rmap->N; (*N)->cmap->n = V->rmap->n; (*N)->rmap->n = U->rmap->n; ierr = PetscObjectComposeFunction((PetscObject)(*N),"MatLRCGetMats_C",MatLRCGetMats_LRC);CHKERRQ(ierr); PetscFunctionReturn(0); }