/* Defines the basic matrix operations for the MAIJ matrix storage format. This format is used for restriction and interpolation operations for multicomponent problems. It interpolates each component the same way independently. We provide: MatMult() MatMultTranspose() MatMultTransposeAdd() MatMultAdd() and MatCreateMAIJ(Mat,dof,Mat*) This single directory handles both the sequential and parallel codes */ #include <../src/mat/impls/maij/maij.h> /*I "petscmat.h" I*/ #include <../src/mat/utils/freespace.h> /*@ MatMAIJGetAIJ - Get the AIJ matrix describing the blockwise action of the MAIJ matrix Not Collective, but if the MAIJ matrix is parallel, the AIJ matrix is also parallel Input Parameter: . A - the MAIJ matrix Output Parameter: . B - the AIJ matrix Level: advanced Notes: The reference count on the AIJ matrix is not increased so you should not destroy it. .seealso: MatCreateMAIJ() @*/ PetscErrorCode MatMAIJGetAIJ(Mat A,Mat *B) { PetscErrorCode ierr; PetscBool ismpimaij,isseqmaij; PetscFunctionBegin; ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIMAIJ,&ismpimaij);CHKERRQ(ierr); ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQMAIJ,&isseqmaij);CHKERRQ(ierr); if (ismpimaij) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; *B = b->A; } else if (isseqmaij) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; *B = b->AIJ; } else { *B = A; } PetscFunctionReturn(0); } /*@ MatMAIJRedimension - Get an MAIJ matrix with the same action, but for a different block size Logically Collective Input Parameter: + A - the MAIJ matrix - dof - the block size for the new matrix Output Parameter: . B - the new MAIJ matrix Level: advanced .seealso: MatCreateMAIJ() @*/ PetscErrorCode MatMAIJRedimension(Mat A,PetscInt dof,Mat *B) { PetscErrorCode ierr; Mat Aij = NULL; PetscFunctionBegin; PetscValidLogicalCollectiveInt(A,dof,2); ierr = MatMAIJGetAIJ(A,&Aij);CHKERRQ(ierr); ierr = MatCreateMAIJ(Aij,dof,B);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatDestroy_SeqMAIJ(Mat A) { PetscErrorCode ierr; Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; PetscFunctionBegin; ierr = MatDestroy(&b->AIJ);CHKERRQ(ierr); ierr = PetscFree(A->data);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqmaij_seqaij_C",NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_seqaij_seqmaij_C",NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_seqaijperm_seqmaij_C",NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_seqaijmkl_seqmaij_C",NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_is_seqmaij_C",NULL);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatSetUp_MAIJ(Mat A) { PetscFunctionBegin; SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Must use MatCreateMAIJ() to create MAIJ matrices"); PetscFunctionReturn(0); } PetscErrorCode MatView_SeqMAIJ(Mat A,PetscViewer viewer) { PetscErrorCode ierr; Mat B; PetscFunctionBegin; ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); ierr = MatView(B,viewer);CHKERRQ(ierr); ierr = MatDestroy(&B);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatView_MPIMAIJ(Mat A,PetscViewer viewer) { PetscErrorCode ierr; Mat B; PetscFunctionBegin; ierr = MatConvert(A,MATMPIAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); ierr = MatView(B,viewer);CHKERRQ(ierr); ierr = MatDestroy(&B);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatDestroy_MPIMAIJ(Mat A) { PetscErrorCode ierr; Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscFunctionBegin; ierr = MatDestroy(&b->AIJ);CHKERRQ(ierr); ierr = MatDestroy(&b->OAIJ);CHKERRQ(ierr); ierr = MatDestroy(&b->A);CHKERRQ(ierr); ierr = VecScatterDestroy(&b->ctx);CHKERRQ(ierr); ierr = VecDestroy(&b->w);CHKERRQ(ierr); ierr = PetscFree(A->data);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_mpimaij_mpiaij_C",NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_mpiaij_mpimaij_C",NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_is_mpimaij_C",NULL);CHKERRQ(ierr); ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); PetscFunctionReturn(0); } /*MC MATMAIJ - MATMAIJ = "maij" - A matrix type to be used for restriction and interpolation operations for multicomponent problems, interpolating or restricting each component the same way independently. The matrix type is based on MATSEQAIJ for sequential matrices, and MATMPIAIJ for distributed matrices. Operations provided: . MatMult . MatMultTranspose . MatMultAdd . MatMultTransposeAdd Level: advanced .seealso: MatMAIJGetAIJ(), MatMAIJRedimension(), MatCreateMAIJ() M*/ PETSC_EXTERN PetscErrorCode MatCreate_MAIJ(Mat A) { PetscErrorCode ierr; Mat_MPIMAIJ *b; PetscMPIInt size; PetscFunctionBegin; ierr = PetscNewLog(A,&b);CHKERRQ(ierr); A->data = (void*)b; ierr = PetscMemzero(A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); A->ops->setup = MatSetUp_MAIJ; b->AIJ = 0; b->dof = 0; b->OAIJ = 0; b->ctx = 0; b->w = 0; ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); if (size == 1) { ierr = PetscObjectChangeTypeName((PetscObject)A,MATSEQMAIJ);CHKERRQ(ierr); } else { ierr = PetscObjectChangeTypeName((PetscObject)A,MATMPIMAIJ);CHKERRQ(ierr); } A->preallocated = PETSC_TRUE; A->assembled = PETSC_TRUE; PetscFunctionReturn(0); } /* --------------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_2(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y, sum1, sum2; PetscErrorCode ierr; PetscInt nonzerorow=0,n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 2.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_2(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[2*i]; alpha2 = x[2*i+1]; while (n-->0) { y[2*(*idx)] += alpha1*(*v); y[2*(*idx)+1] += alpha2*(*v); idx++; v++; } } ierr = PetscLogFlops(4.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_2(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2; PetscErrorCode ierr; PetscInt n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_2(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[2*i]; alpha2 = x[2*i+1]; while (n-->0) { y[2*(*idx)] += alpha1*(*v); y[2*(*idx)+1] += alpha2*(*v); idx++; v++; } } ierr = PetscLogFlops(4.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* --------------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_3(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3; PetscErrorCode ierr; PetscInt nonzerorow=0,n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 3.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_3(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[3*i]; alpha2 = x[3*i+1]; alpha3 = x[3*i+2]; while (n-->0) { y[3*(*idx)] += alpha1*(*v); y[3*(*idx)+1] += alpha2*(*v); y[3*(*idx)+2] += alpha3*(*v); idx++; v++; } } ierr = PetscLogFlops(6.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_3(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3; PetscErrorCode ierr; PetscInt n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_3(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[3*i]; alpha2 = x[3*i+1]; alpha3 = x[3*i+2]; while (n-->0) { y[3*(*idx)] += alpha1*(*v); y[3*(*idx)+1] += alpha2*(*v); y[3*(*idx)+2] += alpha3*(*v); idx++; v++; } } ierr = PetscLogFlops(6.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_4(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4; PetscErrorCode ierr; PetscInt nonzerorow=0,n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 4.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_4(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[4*i]; alpha2 = x[4*i+1]; alpha3 = x[4*i+2]; alpha4 = x[4*i+3]; while (n-->0) { y[4*(*idx)] += alpha1*(*v); y[4*(*idx)+1] += alpha2*(*v); y[4*(*idx)+2] += alpha3*(*v); y[4*(*idx)+3] += alpha4*(*v); idx++; v++; } } ierr = PetscLogFlops(8.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_4(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4; PetscErrorCode ierr; PetscInt n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_4(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[4*i]; alpha2 = x[4*i+1]; alpha3 = x[4*i+2]; alpha4 = x[4*i+3]; while (n-->0) { y[4*(*idx)] += alpha1*(*v); y[4*(*idx)+1] += alpha2*(*v); y[4*(*idx)+2] += alpha3*(*v); y[4*(*idx)+3] += alpha4*(*v); idx++; v++; } } ierr = PetscLogFlops(8.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_5(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5; PetscErrorCode ierr; PetscInt nonzerorow=0,n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 5.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_5(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[5*i]; alpha2 = x[5*i+1]; alpha3 = x[5*i+2]; alpha4 = x[5*i+3]; alpha5 = x[5*i+4]; while (n-->0) { y[5*(*idx)] += alpha1*(*v); y[5*(*idx)+1] += alpha2*(*v); y[5*(*idx)+2] += alpha3*(*v); y[5*(*idx)+3] += alpha4*(*v); y[5*(*idx)+4] += alpha5*(*v); idx++; v++; } } ierr = PetscLogFlops(10.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_5(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5; PetscErrorCode ierr; PetscInt n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_5(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[5*i]; alpha2 = x[5*i+1]; alpha3 = x[5*i+2]; alpha4 = x[5*i+3]; alpha5 = x[5*i+4]; while (n-->0) { y[5*(*idx)] += alpha1*(*v); y[5*(*idx)+1] += alpha2*(*v); y[5*(*idx)+2] += alpha3*(*v); y[5*(*idx)+3] += alpha4*(*v); y[5*(*idx)+4] += alpha5*(*v); idx++; v++; } } ierr = PetscLogFlops(10.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_6(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6; PetscErrorCode ierr; PetscInt nonzerorow=0,n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 6.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_6(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[6*i]; alpha2 = x[6*i+1]; alpha3 = x[6*i+2]; alpha4 = x[6*i+3]; alpha5 = x[6*i+4]; alpha6 = x[6*i+5]; while (n-->0) { y[6*(*idx)] += alpha1*(*v); y[6*(*idx)+1] += alpha2*(*v); y[6*(*idx)+2] += alpha3*(*v); y[6*(*idx)+3] += alpha4*(*v); y[6*(*idx)+4] += alpha5*(*v); y[6*(*idx)+5] += alpha6*(*v); idx++; v++; } } ierr = PetscLogFlops(12.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_6(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6; PetscErrorCode ierr; PetscInt n,i,jrow,j; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_6(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6; PetscErrorCode ierr; PetscInt n,i; const PetscInt m = b->AIJ->rmap->n,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[6*i]; alpha2 = x[6*i+1]; alpha3 = x[6*i+2]; alpha4 = x[6*i+3]; alpha5 = x[6*i+4]; alpha6 = x[6*i+5]; while (n-->0) { y[6*(*idx)] += alpha1*(*v); y[6*(*idx)+1] += alpha2*(*v); y[6*(*idx)+2] += alpha3*(*v); y[6*(*idx)+3] += alpha4*(*v); y[6*(*idx)+4] += alpha5*(*v); y[6*(*idx)+5] += alpha6*(*v); idx++; v++; } } ierr = PetscLogFlops(12.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_7(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt nonzerorow=0,n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 7.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_7(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[7*i]; alpha2 = x[7*i+1]; alpha3 = x[7*i+2]; alpha4 = x[7*i+3]; alpha5 = x[7*i+4]; alpha6 = x[7*i+5]; alpha7 = x[7*i+6]; while (n-->0) { y[7*(*idx)] += alpha1*(*v); y[7*(*idx)+1] += alpha2*(*v); y[7*(*idx)+2] += alpha3*(*v); y[7*(*idx)+3] += alpha4*(*v); y[7*(*idx)+4] += alpha5*(*v); y[7*(*idx)+5] += alpha6*(*v); y[7*(*idx)+6] += alpha7*(*v); idx++; v++; } } ierr = PetscLogFlops(14.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_7(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_7(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[7*i]; alpha2 = x[7*i+1]; alpha3 = x[7*i+2]; alpha4 = x[7*i+3]; alpha5 = x[7*i+4]; alpha6 = x[7*i+5]; alpha7 = x[7*i+6]; while (n-->0) { y[7*(*idx)] += alpha1*(*v); y[7*(*idx)+1] += alpha2*(*v); y[7*(*idx)+2] += alpha3*(*v); y[7*(*idx)+3] += alpha4*(*v); y[7*(*idx)+4] += alpha5*(*v); y[7*(*idx)+5] += alpha6*(*v); y[7*(*idx)+6] += alpha7*(*v); idx++; v++; } } ierr = PetscLogFlops(14.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMult_SeqMAIJ_8(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt nonzerorow=0,n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 8.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_8(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[8*i]; alpha2 = x[8*i+1]; alpha3 = x[8*i+2]; alpha4 = x[8*i+3]; alpha5 = x[8*i+4]; alpha6 = x[8*i+5]; alpha7 = x[8*i+6]; alpha8 = x[8*i+7]; while (n-->0) { y[8*(*idx)] += alpha1*(*v); y[8*(*idx)+1] += alpha2*(*v); y[8*(*idx)+2] += alpha3*(*v); y[8*(*idx)+3] += alpha4*(*v); y[8*(*idx)+4] += alpha5*(*v); y[8*(*idx)+5] += alpha6*(*v); y[8*(*idx)+6] += alpha7*(*v); y[8*(*idx)+7] += alpha8*(*v); idx++; v++; } } ierr = PetscLogFlops(16.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_8(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_8(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[8*i]; alpha2 = x[8*i+1]; alpha3 = x[8*i+2]; alpha4 = x[8*i+3]; alpha5 = x[8*i+4]; alpha6 = x[8*i+5]; alpha7 = x[8*i+6]; alpha8 = x[8*i+7]; while (n-->0) { y[8*(*idx)] += alpha1*(*v); y[8*(*idx)+1] += alpha2*(*v); y[8*(*idx)+2] += alpha3*(*v); y[8*(*idx)+3] += alpha4*(*v); y[8*(*idx)+4] += alpha5*(*v); y[8*(*idx)+5] += alpha6*(*v); y[8*(*idx)+6] += alpha7*(*v); y[8*(*idx)+7] += alpha8*(*v); idx++; v++; } } ierr = PetscLogFlops(16.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_9(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt nonzerorow=0,n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 9*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ PetscErrorCode MatMultTranspose_SeqMAIJ_9(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[9*i]; alpha2 = x[9*i+1]; alpha3 = x[9*i+2]; alpha4 = x[9*i+3]; alpha5 = x[9*i+4]; alpha6 = x[9*i+5]; alpha7 = x[9*i+6]; alpha8 = x[9*i+7]; alpha9 = x[9*i+8]; while (n-->0) { y[9*(*idx)] += alpha1*(*v); y[9*(*idx)+1] += alpha2*(*v); y[9*(*idx)+2] += alpha3*(*v); y[9*(*idx)+3] += alpha4*(*v); y[9*(*idx)+4] += alpha5*(*v); y[9*(*idx)+5] += alpha6*(*v); y[9*(*idx)+6] += alpha7*(*v); y[9*(*idx)+7] += alpha8*(*v); y[9*(*idx)+8] += alpha9*(*v); idx++; v++; } } ierr = PetscLogFlops(18.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_9(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_9(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[9*i]; alpha2 = x[9*i+1]; alpha3 = x[9*i+2]; alpha4 = x[9*i+3]; alpha5 = x[9*i+4]; alpha6 = x[9*i+5]; alpha7 = x[9*i+6]; alpha8 = x[9*i+7]; alpha9 = x[9*i+8]; while (n-->0) { y[9*(*idx)] += alpha1*(*v); y[9*(*idx)+1] += alpha2*(*v); y[9*(*idx)+2] += alpha3*(*v); y[9*(*idx)+3] += alpha4*(*v); y[9*(*idx)+4] += alpha5*(*v); y[9*(*idx)+5] += alpha6*(*v); y[9*(*idx)+6] += alpha7*(*v); y[9*(*idx)+7] += alpha8*(*v); y[9*(*idx)+8] += alpha9*(*v); idx++; v++; } } ierr = PetscLogFlops(18.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMult_SeqMAIJ_10(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9, sum10; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt nonzerorow=0,n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 10.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_10(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9, sum10; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_10(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9,alpha10; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[10*i]; alpha2 = x[10*i+1]; alpha3 = x[10*i+2]; alpha4 = x[10*i+3]; alpha5 = x[10*i+4]; alpha6 = x[10*i+5]; alpha7 = x[10*i+6]; alpha8 = x[10*i+7]; alpha9 = x[10*i+8]; alpha10 = x[10*i+9]; while (n-->0) { y[10*(*idx)] += alpha1*(*v); y[10*(*idx)+1] += alpha2*(*v); y[10*(*idx)+2] += alpha3*(*v); y[10*(*idx)+3] += alpha4*(*v); y[10*(*idx)+4] += alpha5*(*v); y[10*(*idx)+5] += alpha6*(*v); y[10*(*idx)+6] += alpha7*(*v); y[10*(*idx)+7] += alpha8*(*v); y[10*(*idx)+8] += alpha9*(*v); y[10*(*idx)+9] += alpha10*(*v); idx++; v++; } } ierr = PetscLogFlops(20.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_10(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9,alpha10; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[10*i]; alpha2 = x[10*i+1]; alpha3 = x[10*i+2]; alpha4 = x[10*i+3]; alpha5 = x[10*i+4]; alpha6 = x[10*i+5]; alpha7 = x[10*i+6]; alpha8 = x[10*i+7]; alpha9 = x[10*i+8]; alpha10 = x[10*i+9]; while (n-->0) { y[10*(*idx)] += alpha1*(*v); y[10*(*idx)+1] += alpha2*(*v); y[10*(*idx)+2] += alpha3*(*v); y[10*(*idx)+3] += alpha4*(*v); y[10*(*idx)+4] += alpha5*(*v); y[10*(*idx)+5] += alpha6*(*v); y[10*(*idx)+6] += alpha7*(*v); y[10*(*idx)+7] += alpha8*(*v); y[10*(*idx)+8] += alpha9*(*v); y[10*(*idx)+9] += alpha10*(*v); idx++; v++; } } ierr = PetscLogFlops(20.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /*--------------------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_11(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9, sum10, sum11; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt nonzerorow=0,n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 11*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_11(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9, sum10, sum11; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_11(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9,alpha10,alpha11; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[11*i]; alpha2 = x[11*i+1]; alpha3 = x[11*i+2]; alpha4 = x[11*i+3]; alpha5 = x[11*i+4]; alpha6 = x[11*i+5]; alpha7 = x[11*i+6]; alpha8 = x[11*i+7]; alpha9 = x[11*i+8]; alpha10 = x[11*i+9]; alpha11 = x[11*i+10]; while (n-->0) { y[11*(*idx)] += alpha1*(*v); y[11*(*idx)+1] += alpha2*(*v); y[11*(*idx)+2] += alpha3*(*v); y[11*(*idx)+3] += alpha4*(*v); y[11*(*idx)+4] += alpha5*(*v); y[11*(*idx)+5] += alpha6*(*v); y[11*(*idx)+6] += alpha7*(*v); y[11*(*idx)+7] += alpha8*(*v); y[11*(*idx)+8] += alpha9*(*v); y[11*(*idx)+9] += alpha10*(*v); y[11*(*idx)+10] += alpha11*(*v); idx++; v++; } } ierr = PetscLogFlops(22*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_11(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9,alpha10,alpha11; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[11*i]; alpha2 = x[11*i+1]; alpha3 = x[11*i+2]; alpha4 = x[11*i+3]; alpha5 = x[11*i+4]; alpha6 = x[11*i+5]; alpha7 = x[11*i+6]; alpha8 = x[11*i+7]; alpha9 = x[11*i+8]; alpha10 = x[11*i+9]; alpha11 = x[11*i+10]; while (n-->0) { y[11*(*idx)] += alpha1*(*v); y[11*(*idx)+1] += alpha2*(*v); y[11*(*idx)+2] += alpha3*(*v); y[11*(*idx)+3] += alpha4*(*v); y[11*(*idx)+4] += alpha5*(*v); y[11*(*idx)+5] += alpha6*(*v); y[11*(*idx)+6] += alpha7*(*v); y[11*(*idx)+7] += alpha8*(*v); y[11*(*idx)+8] += alpha9*(*v); y[11*(*idx)+9] += alpha10*(*v); y[11*(*idx)+10] += alpha11*(*v); idx++; v++; } } ierr = PetscLogFlops(22*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /*--------------------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_16(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscScalar sum9, sum10, sum11, sum12, sum13, sum14, sum15, sum16; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt nonzerorow=0,n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 16.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_16(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8; PetscScalar alpha9,alpha10,alpha11,alpha12,alpha13,alpha14,alpha15,alpha16; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[16*i]; alpha2 = x[16*i+1]; alpha3 = x[16*i+2]; alpha4 = x[16*i+3]; alpha5 = x[16*i+4]; alpha6 = x[16*i+5]; alpha7 = x[16*i+6]; alpha8 = x[16*i+7]; alpha9 = x[16*i+8]; alpha10 = x[16*i+9]; alpha11 = x[16*i+10]; alpha12 = x[16*i+11]; alpha13 = x[16*i+12]; alpha14 = x[16*i+13]; alpha15 = x[16*i+14]; alpha16 = x[16*i+15]; while (n-->0) { y[16*(*idx)] += alpha1*(*v); y[16*(*idx)+1] += alpha2*(*v); y[16*(*idx)+2] += alpha3*(*v); y[16*(*idx)+3] += alpha4*(*v); y[16*(*idx)+4] += alpha5*(*v); y[16*(*idx)+5] += alpha6*(*v); y[16*(*idx)+6] += alpha7*(*v); y[16*(*idx)+7] += alpha8*(*v); y[16*(*idx)+8] += alpha9*(*v); y[16*(*idx)+9] += alpha10*(*v); y[16*(*idx)+10] += alpha11*(*v); y[16*(*idx)+11] += alpha12*(*v); y[16*(*idx)+12] += alpha13*(*v); y[16*(*idx)+13] += alpha14*(*v); y[16*(*idx)+14] += alpha15*(*v); y[16*(*idx)+15] += alpha16*(*v); idx++; v++; } } ierr = PetscLogFlops(32.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_16(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscScalar sum9, sum10, sum11, sum12, sum13, sum14, sum15, sum16; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_16(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8; PetscScalar alpha9,alpha10,alpha11,alpha12,alpha13,alpha14,alpha15,alpha16; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[16*i]; alpha2 = x[16*i+1]; alpha3 = x[16*i+2]; alpha4 = x[16*i+3]; alpha5 = x[16*i+4]; alpha6 = x[16*i+5]; alpha7 = x[16*i+6]; alpha8 = x[16*i+7]; alpha9 = x[16*i+8]; alpha10 = x[16*i+9]; alpha11 = x[16*i+10]; alpha12 = x[16*i+11]; alpha13 = x[16*i+12]; alpha14 = x[16*i+13]; alpha15 = x[16*i+14]; alpha16 = x[16*i+15]; while (n-->0) { y[16*(*idx)] += alpha1*(*v); y[16*(*idx)+1] += alpha2*(*v); y[16*(*idx)+2] += alpha3*(*v); y[16*(*idx)+3] += alpha4*(*v); y[16*(*idx)+4] += alpha5*(*v); y[16*(*idx)+5] += alpha6*(*v); y[16*(*idx)+6] += alpha7*(*v); y[16*(*idx)+7] += alpha8*(*v); y[16*(*idx)+8] += alpha9*(*v); y[16*(*idx)+9] += alpha10*(*v); y[16*(*idx)+10] += alpha11*(*v); y[16*(*idx)+11] += alpha12*(*v); y[16*(*idx)+12] += alpha13*(*v); y[16*(*idx)+13] += alpha14*(*v); y[16*(*idx)+14] += alpha15*(*v); y[16*(*idx)+15] += alpha16*(*v); idx++; v++; } } ierr = PetscLogFlops(32.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /*--------------------------------------------------------------------------------------------*/ PetscErrorCode MatMult_SeqMAIJ_18(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscScalar sum9, sum10, sum11, sum12, sum13, sum14, sum15, sum16, sum17, sum18; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt nonzerorow=0,n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; i0); for (j=0; jnz - 18.0*nonzerorow);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_18(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8; PetscScalar alpha9,alpha10,alpha11,alpha12,alpha13,alpha14,alpha15,alpha16,alpha17,alpha18; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[18*i]; alpha2 = x[18*i+1]; alpha3 = x[18*i+2]; alpha4 = x[18*i+3]; alpha5 = x[18*i+4]; alpha6 = x[18*i+5]; alpha7 = x[18*i+6]; alpha8 = x[18*i+7]; alpha9 = x[18*i+8]; alpha10 = x[18*i+9]; alpha11 = x[18*i+10]; alpha12 = x[18*i+11]; alpha13 = x[18*i+12]; alpha14 = x[18*i+13]; alpha15 = x[18*i+14]; alpha16 = x[18*i+15]; alpha17 = x[18*i+16]; alpha18 = x[18*i+17]; while (n-->0) { y[18*(*idx)] += alpha1*(*v); y[18*(*idx)+1] += alpha2*(*v); y[18*(*idx)+2] += alpha3*(*v); y[18*(*idx)+3] += alpha4*(*v); y[18*(*idx)+4] += alpha5*(*v); y[18*(*idx)+5] += alpha6*(*v); y[18*(*idx)+6] += alpha7*(*v); y[18*(*idx)+7] += alpha8*(*v); y[18*(*idx)+8] += alpha9*(*v); y[18*(*idx)+9] += alpha10*(*v); y[18*(*idx)+10] += alpha11*(*v); y[18*(*idx)+11] += alpha12*(*v); y[18*(*idx)+12] += alpha13*(*v); y[18*(*idx)+13] += alpha14*(*v); y[18*(*idx)+14] += alpha15*(*v); y[18*(*idx)+15] += alpha16*(*v); y[18*(*idx)+16] += alpha17*(*v); y[18*(*idx)+17] += alpha18*(*v); idx++; v++; } } ierr = PetscLogFlops(36.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_18(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscScalar sum9, sum10, sum11, sum12, sum13, sum14, sum15, sum16, sum17, sum18; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_18(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8; PetscScalar alpha9,alpha10,alpha11,alpha12,alpha13,alpha14,alpha15,alpha16,alpha17,alpha18; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx; PetscInt n,i; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[18*i]; alpha2 = x[18*i+1]; alpha3 = x[18*i+2]; alpha4 = x[18*i+3]; alpha5 = x[18*i+4]; alpha6 = x[18*i+5]; alpha7 = x[18*i+6]; alpha8 = x[18*i+7]; alpha9 = x[18*i+8]; alpha10 = x[18*i+9]; alpha11 = x[18*i+10]; alpha12 = x[18*i+11]; alpha13 = x[18*i+12]; alpha14 = x[18*i+13]; alpha15 = x[18*i+14]; alpha16 = x[18*i+15]; alpha17 = x[18*i+16]; alpha18 = x[18*i+17]; while (n-->0) { y[18*(*idx)] += alpha1*(*v); y[18*(*idx)+1] += alpha2*(*v); y[18*(*idx)+2] += alpha3*(*v); y[18*(*idx)+3] += alpha4*(*v); y[18*(*idx)+4] += alpha5*(*v); y[18*(*idx)+5] += alpha6*(*v); y[18*(*idx)+6] += alpha7*(*v); y[18*(*idx)+7] += alpha8*(*v); y[18*(*idx)+8] += alpha9*(*v); y[18*(*idx)+9] += alpha10*(*v); y[18*(*idx)+10] += alpha11*(*v); y[18*(*idx)+11] += alpha12*(*v); y[18*(*idx)+12] += alpha13*(*v); y[18*(*idx)+13] += alpha14*(*v); y[18*(*idx)+14] += alpha15*(*v); y[18*(*idx)+15] += alpha16*(*v); y[18*(*idx)+16] += alpha17*(*v); y[18*(*idx)+17] += alpha18*(*v); idx++; v++; } } ierr = PetscLogFlops(36.0*a->nz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMult_SeqMAIJ_N(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,*sums; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt n,i,jrow,j,dof = b->dof,k; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_SeqMAIJ_N(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v; PetscScalar *y,*sums; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,*ii; PetscInt n,i,jrow,j,dof = b->dof,k; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_SeqMAIJ_N(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v,*alpha; PetscScalar *y; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,dof = b->dof; PetscInt n,i,k; PetscFunctionBegin; ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecSet(yy,0.0);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha = x + dof*i; while (n-->0) { for (k=0; knz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_SeqMAIJ_N(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; const PetscScalar *x,*v,*alpha; PetscScalar *y; PetscErrorCode ierr; const PetscInt m = b->AIJ->rmap->n,*idx,dof = b->dof; PetscInt n,i,k; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha = x + dof*i; while (n-->0) { for (k=0; knz);CHKERRQ(ierr); ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /*===================================================================================*/ PetscErrorCode MatMult_MPIMAIJ_dof(Mat A,Vec xx,Vec yy) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscErrorCode ierr; PetscFunctionBegin; /* start the scatter */ ierr = VecScatterBegin(b->ctx,xx,b->w,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); ierr = (*b->AIJ->ops->mult)(b->AIJ,xx,yy);CHKERRQ(ierr); ierr = VecScatterEnd(b->ctx,xx,b->w,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); ierr = (*b->OAIJ->ops->multadd)(b->OAIJ,b->w,yy,yy);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTranspose_MPIMAIJ_dof(Mat A,Vec xx,Vec yy) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = (*b->OAIJ->ops->multtranspose)(b->OAIJ,xx,b->w);CHKERRQ(ierr); ierr = (*b->AIJ->ops->multtranspose)(b->AIJ,xx,yy);CHKERRQ(ierr); ierr = VecScatterBegin(b->ctx,b->w,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); ierr = VecScatterEnd(b->ctx,b->w,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultAdd_MPIMAIJ_dof(Mat A,Vec xx,Vec yy,Vec zz) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscErrorCode ierr; PetscFunctionBegin; /* start the scatter */ ierr = VecScatterBegin(b->ctx,xx,b->w,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); ierr = (*b->AIJ->ops->multadd)(b->AIJ,xx,yy,zz);CHKERRQ(ierr); ierr = VecScatterEnd(b->ctx,xx,b->w,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); ierr = (*b->OAIJ->ops->multadd)(b->OAIJ,b->w,zz,zz);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatMultTransposeAdd_MPIMAIJ_dof(Mat A,Vec xx,Vec yy,Vec zz) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = (*b->OAIJ->ops->multtranspose)(b->OAIJ,xx,b->w);CHKERRQ(ierr); ierr = VecScatterBegin(b->ctx,b->w,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); ierr = (*b->AIJ->ops->multtransposeadd)(b->AIJ,xx,yy,zz);CHKERRQ(ierr); ierr = VecScatterEnd(b->ctx,b->w,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ----------------------------------------------------------------*/ PetscErrorCode MatPtAPSymbolic_SeqAIJ_SeqMAIJ(Mat A,Mat PP,PetscReal fill,Mat *C) { PetscErrorCode ierr; PetscFreeSpaceList free_space=NULL,current_space=NULL; Mat_SeqMAIJ *pp =(Mat_SeqMAIJ*)PP->data; Mat P =pp->AIJ; Mat_SeqAIJ *a =(Mat_SeqAIJ*)A->data,*p=(Mat_SeqAIJ*)P->data,*c; PetscInt *pti,*ptj,*ptJ; PetscInt *ci,*cj,*ptadenserow,*ptasparserow,*denserow,*sparserow,*ptaj; const PetscInt an=A->cmap->N,am=A->rmap->N,pn=P->cmap->N,pm=P->rmap->N,ppdof=pp->dof; PetscInt i,j,k,dof,pshift,ptnzi,arow,anzj,ptanzi,prow,pnzj,cnzi,cn; MatScalar *ca; const PetscInt *pi = p->i,*pj = p->j,*pjj,*ai=a->i,*aj=a->j,*ajj; PetscFunctionBegin; /* Get ij structure of P^T */ ierr = MatGetSymbolicTranspose_SeqAIJ(P,&pti,&ptj);CHKERRQ(ierr); cn = pn*ppdof; /* Allocate ci array, arrays for fill computation and */ /* free space for accumulating nonzero column info */ ierr = PetscMalloc1(cn+1,&ci);CHKERRQ(ierr); ci[0] = 0; /* Work arrays for rows of P^T*A */ ierr = PetscMalloc4(an,&ptadenserow,an,&ptasparserow,cn,&denserow,cn,&sparserow);CHKERRQ(ierr); ierr = PetscMemzero(ptadenserow,an*sizeof(PetscInt));CHKERRQ(ierr); ierr = PetscMemzero(denserow,cn*sizeof(PetscInt));CHKERRQ(ierr); /* Set initial free space to be nnz(A) scaled by aspect ratio of P. */ /* This should be reasonable if sparsity of PtAP is similar to that of A. */ /* Note, aspect ratio of P is the same as the aspect ratio of SeqAIJ inside P */ ierr = PetscFreeSpaceGet(PetscIntMultTruncate(ai[am]/pm,pn),&free_space);CHKERRQ(ierr); current_space = free_space; /* Determine symbolic info for each row of C: */ for (i=0; ilocal_remainingtotal_array_size),¤t_space);CHKERRQ(ierr); } /* Copy data into free space, and zero out denserows */ ierr = PetscMemcpy(current_space->array,sparserow,cnzi*sizeof(PetscInt));CHKERRQ(ierr); current_space->array += cnzi; current_space->local_used += cnzi; current_space->local_remaining -= cnzi; for (j=0; jdof);CHKERRQ(ierr); /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ /* Since these are PETSc arrays, change flags to free them as necessary. */ c = (Mat_SeqAIJ*)((*C)->data); c->free_a = PETSC_TRUE; c->free_ij = PETSC_TRUE; c->nonew = 0; (*C)->ops->ptapnumeric = MatPtAPNumeric_SeqAIJ_SeqMAIJ; /* Clean up. */ ierr = MatRestoreSymbolicTranspose_SeqAIJ(P,&pti,&ptj);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatPtAPNumeric_SeqAIJ_SeqMAIJ(Mat A,Mat PP,Mat C) { /* This routine requires testing -- first draft only */ PetscErrorCode ierr; Mat_SeqMAIJ *pp=(Mat_SeqMAIJ*)PP->data; Mat P =pp->AIJ; Mat_SeqAIJ *a = (Mat_SeqAIJ*) A->data; Mat_SeqAIJ *p = (Mat_SeqAIJ*) P->data; Mat_SeqAIJ *c = (Mat_SeqAIJ*) C->data; const PetscInt *ai=a->i,*aj=a->j,*pi=p->i,*pj=p->j,*pJ,*pjj; const PetscInt *ci=c->i,*cj=c->j,*cjj; const PetscInt am =A->rmap->N,cn=C->cmap->N,cm=C->rmap->N,ppdof=pp->dof; PetscInt i,j,k,pshift,poffset,anzi,pnzi,apnzj,nextap,pnzj,prow,crow,*apj,*apjdense; const MatScalar *aa=a->a,*pa=p->a,*pA,*paj; MatScalar *ca=c->a,*caj,*apa; PetscFunctionBegin; /* Allocate temporary array for storage of one row of A*P */ ierr = PetscCalloc3(cn,&apa,cn,&apj,cn,&apjdense);CHKERRQ(ierr); /* Clear old values in C */ ierr = PetscMemzero(ca,ci[cm]*sizeof(MatScalar));CHKERRQ(ierr); for (i=0; iops->ptapsymbolic)(A,PP,fill,C);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatPtAPNumeric_MPIAIJ_MPIMAIJ(Mat A,Mat PP,Mat C) { PetscFunctionBegin; SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatPtAPNumeric is not implemented for MPIMAIJ matrix yet"); PetscFunctionReturn(0); } PETSC_INTERN PetscErrorCode MatPtAP_MPIAIJ_MPIMAIJ(Mat A,Mat P,MatReuse scall,PetscReal fill,Mat *C) { PetscErrorCode ierr; PetscFunctionBegin; if (scall == MAT_INITIAL_MATRIX) { ierr = PetscLogEventBegin(MAT_PtAPSymbolic,A,P,0,0);CHKERRQ(ierr); ierr = MatPtAPSymbolic_MPIAIJ_MPIMAIJ(A,P,fill,C);CHKERRQ(ierr); ierr = PetscLogEventEnd(MAT_PtAPSymbolic,A,P,0,0);CHKERRQ(ierr); } ierr = PetscLogEventBegin(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); ierr = ((*C)->ops->ptapnumeric)(A,P,*C);CHKERRQ(ierr); ierr = PetscLogEventEnd(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); PetscFunctionReturn(0); } PETSC_INTERN PetscErrorCode MatConvert_SeqMAIJ_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat a = b->AIJ,B; Mat_SeqAIJ *aij = (Mat_SeqAIJ*)a->data; PetscErrorCode ierr; PetscInt m,n,i,ncols,*ilen,nmax = 0,*icols,j,k,ii,dof = b->dof; PetscInt *cols; PetscScalar *vals; PetscFunctionBegin; ierr = MatGetSize(a,&m,&n);CHKERRQ(ierr); ierr = PetscMalloc1(dof*m,&ilen);CHKERRQ(ierr); for (i=0; iilen[i]); for (j=0; jilen[i]; } ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,dof*m,dof*n,0,ilen,&B);CHKERRQ(ierr); ierr = PetscFree(ilen);CHKERRQ(ierr); ierr = PetscMalloc1(nmax,&icols);CHKERRQ(ierr); ii = 0; for (i=0; i PETSC_INTERN PetscErrorCode MatConvert_MPIMAIJ_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) { Mat_MPIMAIJ *maij = (Mat_MPIMAIJ*)A->data; Mat MatAIJ = ((Mat_SeqMAIJ*)maij->AIJ->data)->AIJ,B; Mat MatOAIJ = ((Mat_SeqMAIJ*)maij->OAIJ->data)->AIJ; Mat_SeqAIJ *AIJ = (Mat_SeqAIJ*) MatAIJ->data; Mat_SeqAIJ *OAIJ =(Mat_SeqAIJ*) MatOAIJ->data; Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*) maij->A->data; PetscInt dof = maij->dof,i,j,*dnz = NULL,*onz = NULL,nmax = 0,onmax = 0; PetscInt *oicols = NULL,*icols = NULL,ncols,*cols = NULL,oncols,*ocols = NULL; PetscInt rstart,cstart,*garray,ii,k; PetscErrorCode ierr; PetscScalar *vals,*ovals; PetscFunctionBegin; ierr = PetscMalloc2(A->rmap->n,&dnz,A->rmap->n,&onz);CHKERRQ(ierr); for (i=0; irmap->n/dof; i++) { nmax = PetscMax(nmax,AIJ->ilen[i]); onmax = PetscMax(onmax,OAIJ->ilen[i]); for (j=0; jilen[i]; onz[dof*i+j] = OAIJ->ilen[i]; } } ierr = MatCreateAIJ(PetscObjectComm((PetscObject)A),A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N,0,dnz,0,onz,&B);CHKERRQ(ierr); ierr = MatSetBlockSize(B,dof);CHKERRQ(ierr); ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); ierr = PetscMalloc2(nmax,&icols,onmax,&oicols);CHKERRQ(ierr); rstart = dof*maij->A->rmap->rstart; cstart = dof*maij->A->cmap->rstart; garray = mpiaij->garray; ii = rstart; for (i=0; irmap->n/dof; i++) { ierr = MatGetRow_SeqAIJ(MatAIJ,i,&ncols,&cols,&vals);CHKERRQ(ierr); ierr = MatGetRow_SeqAIJ(MatOAIJ,i,&oncols,&ocols,&ovals);CHKERRQ(ierr); for (j=0; jrefct; /* save ((PetscObject)A)->refct */ ((PetscObject)A)->refct = 1; ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); ((PetscObject)A)->refct = refct; /* restore ((PetscObject)A)->refct */ } else { *newmat = B; } PetscFunctionReturn(0); } PetscErrorCode MatCreateSubMatrix_MAIJ(Mat mat,IS isrow,IS iscol,MatReuse cll,Mat *newmat) { PetscErrorCode ierr; Mat A; PetscFunctionBegin; ierr = MatConvert(mat,MATAIJ,MAT_INITIAL_MATRIX,&A);CHKERRQ(ierr); ierr = MatCreateSubMatrix(A,isrow,iscol,cll,newmat);CHKERRQ(ierr); ierr = MatDestroy(&A);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode MatCreateSubMatrices_MAIJ(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) { PetscErrorCode ierr; Mat A; PetscFunctionBegin; ierr = MatConvert(mat,MATAIJ,MAT_INITIAL_MATRIX,&A);CHKERRQ(ierr); ierr = MatCreateSubMatrices(A,n,irow,icol,scall,submat);CHKERRQ(ierr); ierr = MatDestroy(&A);CHKERRQ(ierr); PetscFunctionReturn(0); } PETSC_INTERN PetscErrorCode MatPtAP_IS_XAIJ(Mat,Mat,MatReuse,PetscReal,Mat*); /* ---------------------------------------------------------------------------------- */ /*@ MatCreateMAIJ - Creates a matrix type providing restriction and interpolation operations for multicomponent problems. It interpolates each component the same way independently. The matrix type is based on MATSEQAIJ for sequential matrices, and MATMPIAIJ for distributed matrices. Collective Input Parameters: + A - the AIJ matrix describing the action on blocks - dof - the block size (number of components per node) Output Parameter: . maij - the new MAIJ matrix Operations provided: + MatMult . MatMultTranspose . MatMultAdd . MatMultTransposeAdd - MatView Level: advanced .seealso: MatMAIJGetAIJ(), MatMAIJRedimension(), MATMAIJ @*/ PetscErrorCode MatCreateMAIJ(Mat A,PetscInt dof,Mat *maij) { PetscErrorCode ierr; PetscMPIInt size; PetscInt n; Mat B; PetscFunctionBegin; ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); if (dof == 1) *maij = A; else { ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); ierr = MatSetSizes(B,dof*A->rmap->n,dof*A->cmap->n,dof*A->rmap->N,dof*A->cmap->N);CHKERRQ(ierr); ierr = PetscLayoutSetBlockSize(B->rmap,dof);CHKERRQ(ierr); ierr = PetscLayoutSetBlockSize(B->cmap,dof);CHKERRQ(ierr); ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); B->assembled = PETSC_TRUE; ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); if (size == 1) { Mat_SeqMAIJ *b; ierr = MatSetType(B,MATSEQMAIJ);CHKERRQ(ierr); B->ops->setup = NULL; B->ops->destroy = MatDestroy_SeqMAIJ; B->ops->view = MatView_SeqMAIJ; b = (Mat_SeqMAIJ*)B->data; b->dof = dof; b->AIJ = A; if (dof == 2) { B->ops->mult = MatMult_SeqMAIJ_2; B->ops->multadd = MatMultAdd_SeqMAIJ_2; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_2; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_2; } else if (dof == 3) { B->ops->mult = MatMult_SeqMAIJ_3; B->ops->multadd = MatMultAdd_SeqMAIJ_3; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_3; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_3; } else if (dof == 4) { B->ops->mult = MatMult_SeqMAIJ_4; B->ops->multadd = MatMultAdd_SeqMAIJ_4; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_4; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_4; } else if (dof == 5) { B->ops->mult = MatMult_SeqMAIJ_5; B->ops->multadd = MatMultAdd_SeqMAIJ_5; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_5; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_5; } else if (dof == 6) { B->ops->mult = MatMult_SeqMAIJ_6; B->ops->multadd = MatMultAdd_SeqMAIJ_6; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_6; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_6; } else if (dof == 7) { B->ops->mult = MatMult_SeqMAIJ_7; B->ops->multadd = MatMultAdd_SeqMAIJ_7; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_7; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_7; } else if (dof == 8) { B->ops->mult = MatMult_SeqMAIJ_8; B->ops->multadd = MatMultAdd_SeqMAIJ_8; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_8; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_8; } else if (dof == 9) { B->ops->mult = MatMult_SeqMAIJ_9; B->ops->multadd = MatMultAdd_SeqMAIJ_9; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_9; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_9; } else if (dof == 10) { B->ops->mult = MatMult_SeqMAIJ_10; B->ops->multadd = MatMultAdd_SeqMAIJ_10; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_10; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_10; } else if (dof == 11) { B->ops->mult = MatMult_SeqMAIJ_11; B->ops->multadd = MatMultAdd_SeqMAIJ_11; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_11; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_11; } else if (dof == 16) { B->ops->mult = MatMult_SeqMAIJ_16; B->ops->multadd = MatMultAdd_SeqMAIJ_16; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_16; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_16; } else if (dof == 18) { B->ops->mult = MatMult_SeqMAIJ_18; B->ops->multadd = MatMultAdd_SeqMAIJ_18; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_18; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_18; } else { B->ops->mult = MatMult_SeqMAIJ_N; B->ops->multadd = MatMultAdd_SeqMAIJ_N; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_N; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_N; } ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqmaij_seqaij_C",MatConvert_SeqMAIJ_SeqAIJ);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaij_seqmaij_C",MatPtAP_SeqAIJ_SeqMAIJ);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaijperm_seqmaij_C",MatPtAP_SeqAIJ_SeqMAIJ);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaijmkl_seqmaij_C",MatPtAP_SeqAIJ_SeqMAIJ);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_is_seqmaij_C",MatPtAP_IS_XAIJ);CHKERRQ(ierr); } else { Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; Mat_MPIMAIJ *b; IS from,to; Vec gvec; ierr = MatSetType(B,MATMPIMAIJ);CHKERRQ(ierr); B->ops->setup = NULL; B->ops->destroy = MatDestroy_MPIMAIJ; B->ops->view = MatView_MPIMAIJ; b = (Mat_MPIMAIJ*)B->data; b->dof = dof; b->A = A; ierr = MatCreateMAIJ(mpiaij->A,dof,&b->AIJ);CHKERRQ(ierr); ierr = MatCreateMAIJ(mpiaij->B,dof,&b->OAIJ);CHKERRQ(ierr); ierr = VecGetSize(mpiaij->lvec,&n);CHKERRQ(ierr); ierr = VecCreate(PETSC_COMM_SELF,&b->w);CHKERRQ(ierr); ierr = VecSetSizes(b->w,n*dof,n*dof);CHKERRQ(ierr); ierr = VecSetBlockSize(b->w,dof);CHKERRQ(ierr); ierr = VecSetType(b->w,VECSEQ);CHKERRQ(ierr); /* create two temporary Index sets for build scatter gather */ ierr = ISCreateBlock(PetscObjectComm((PetscObject)A),dof,n,mpiaij->garray,PETSC_COPY_VALUES,&from);CHKERRQ(ierr); ierr = ISCreateStride(PETSC_COMM_SELF,n*dof,0,1,&to);CHKERRQ(ierr); /* create temporary global vector to generate scatter context */ ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),dof,dof*A->cmap->n,dof*A->cmap->N,NULL,&gvec);CHKERRQ(ierr); /* generate the scatter context */ ierr = VecScatterCreate(gvec,from,b->w,to,&b->ctx);CHKERRQ(ierr); ierr = ISDestroy(&from);CHKERRQ(ierr); ierr = ISDestroy(&to);CHKERRQ(ierr); ierr = VecDestroy(&gvec);CHKERRQ(ierr); B->ops->mult = MatMult_MPIMAIJ_dof; B->ops->multtranspose = MatMultTranspose_MPIMAIJ_dof; B->ops->multadd = MatMultAdd_MPIMAIJ_dof; B->ops->multtransposeadd = MatMultTransposeAdd_MPIMAIJ_dof; ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpimaij_mpiaij_C",MatConvert_MPIMAIJ_MPIAIJ);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_mpiaij_mpimaij_C",MatPtAP_MPIAIJ_MPIMAIJ);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_is_mpimaij_C",MatPtAP_IS_XAIJ);CHKERRQ(ierr); } B->ops->createsubmatrix = MatCreateSubMatrix_MAIJ; B->ops->createsubmatrices = MatCreateSubMatrices_MAIJ; ierr = MatSetUp(B);CHKERRQ(ierr); *maij = B; ierr = MatViewFromOptions(B,NULL,"-mat_view");CHKERRQ(ierr); } PetscFunctionReturn(0); }