static const char help[] = "Test ParMETIS handling of negative weights.\n\n"; /* Test contributed by John Fettig */ /* * This file implements two tests for a bug reported in ParMETIS. These tests are not expected to pass without the * patches in the PETSc distribution of ParMetis. See parmetis.py * * * The bug was reported upstream, but has received no action so far. * * http://glaros.dtc.umn.edu/gkhome/node/837 * */ #include #include #define PetscCallPARMETIS(...) \ do { \ int metis_ierr = __VA_ARGS__; \ PetscCheck(metis_ierr != METIS_ERROR_INPUT, PETSC_COMM_SELF, PETSC_ERR_LIB, "ParMETIS error due to wrong inputs and/or options"); \ PetscCheck(metis_ierr != METIS_ERROR_MEMORY, PETSC_COMM_SELF, PETSC_ERR_LIB, "ParMETIS error due to insufficient memory"); \ PetscCheck(metis_ierr != METIS_ERROR, PETSC_COMM_SELF, PETSC_ERR_LIB, "ParMETIS general error"); \ } while (0) int main(int argc, char *argv[]) { PetscBool flg; PetscMPIInt rank, size; idx_t ni, isize, *vtxdist, *xadj, *adjncy, *vwgt, *part; idx_t wgtflag = 0, numflag = 0, ncon = 1, ndims = 3, edgecut = 0; idx_t options[5]; PetscReal *xyz; real_t *sxyz, *tpwgts, ubvec[1]; MPI_Comm comm; FILE *fp; char fname[PETSC_MAX_PATH_LEN], prefix[PETSC_MAX_PATH_LEN] = ""; size_t red; PetscFunctionBeginUser; PetscCall(PetscInitialize(&argc, &argv, NULL, help)); #if defined(PETSC_USE_64BIT_INDICES) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "This example only works with 32-bit indices\n")); PetscCall(PetscFinalize()); return 0; #endif MPI_Comm_rank(PETSC_COMM_WORLD, &rank); MPI_Comm_size(PETSC_COMM_WORLD, &size); PetscOptionsBegin(PETSC_COMM_WORLD, NULL, "Parmetis test options", ""); PetscCall(PetscOptionsString("-prefix", "Path and prefix of test file", "", prefix, prefix, sizeof(prefix), &flg)); PetscCheck(flg, PETSC_COMM_WORLD, PETSC_ERR_USER, "Must specify -prefix"); PetscOptionsEnd(); PetscCall(PetscMalloc1(size + 1, &vtxdist)); PetscCall(PetscSNPrintf(fname, sizeof(fname), "%s.%d.graph", prefix, rank)); PetscCall(PetscFOpen(PETSC_COMM_SELF, fname, "r", &fp)); red = fread(vtxdist, sizeof(idx_t), size + 1, fp); PetscCheck(red == (size_t)(size + 1), PETSC_COMM_SELF, PETSC_ERR_SYS, "Unable to read from data file"); ni = vtxdist[rank + 1] - vtxdist[rank]; PetscCall(PetscMalloc1(ni + 1, &xadj)); red = fread(xadj, sizeof(idx_t), ni + 1, fp); PetscCheck(red == (size_t)(ni + 1), PETSC_COMM_SELF, PETSC_ERR_SYS, "Unable to read from data file"); PetscCall(PetscMalloc1(xadj[ni], &adjncy)); for (PetscInt i = 0; i < ni; i++) { red = fread(&adjncy[xadj[i]], sizeof(idx_t), xadj[i + 1] - xadj[i], fp); PetscCheck(red == (size_t)(xadj[i + 1] - xadj[i]), PETSC_COMM_SELF, PETSC_ERR_SYS, "Unable to read from data file"); } PetscCall(PetscFClose(PETSC_COMM_SELF, fp)); PetscCall(PetscSNPrintf(fname, sizeof(fname), "%s.%d.graph.xyz", prefix, rank)); PetscCall(PetscFOpen(PETSC_COMM_SELF, fname, "r", &fp)); PetscCall(PetscMalloc3(ni * ndims, &xyz, ni, &part, size, &tpwgts)); PetscCall(PetscMalloc1(ni * ndims, &sxyz)); red = fread(xyz, sizeof(PetscReal), ndims * ni, fp); PetscCheck(red == (size_t)(ndims * ni), PETSC_COMM_SELF, PETSC_ERR_SYS, "Unable to read from data file"); for (PetscInt i = 0; i < ni * ndims; i++) sxyz[i] = (size_t)xyz[i]; PetscCall(PetscFClose(PETSC_COMM_SELF, fp)); vwgt = NULL; for (PetscInt i = 0; i < size; i++) tpwgts[i] = 1. / size; isize = size; ubvec[0] = 1.05; options[0] = 0; options[1] = 2; options[2] = 15; options[3] = 0; options[4] = 0; PetscCallMPI(MPI_Comm_dup(MPI_COMM_WORLD, &comm)); PetscCallPARMETIS(ParMETIS_V3_PartGeomKway(vtxdist, xadj, adjncy, vwgt, NULL, &wgtflag, &numflag, &ndims, sxyz, &ncon, &isize, tpwgts, ubvec, options, &edgecut, part, &comm)); PetscCallMPI(MPI_Comm_free(&comm)); PetscCall(PetscFree(vtxdist)); PetscCall(PetscFree(xadj)); PetscCall(PetscFree(adjncy)); PetscCall(PetscFree3(xyz, part, tpwgts)); PetscCall(PetscFree(sxyz)); PetscCall(PetscFinalize()); return 0; } /*TEST build: requires: parmetis test: nsize: 2 requires: parmetis datafilespath !complex double !defined(PETSC_USE_64BIT_INDICES) args: -prefix ${DATAFILESPATH}/parmetis-test/testnp2 test: suffix: 2 nsize: 4 requires: parmetis datafilespath !complex double !defined(PETSC_USE_64BIT_INDICES) args: -prefix ${DATAFILESPATH}/parmetis-test/testnp4 TEST*/