static char help[] = "Tests the various sequential routines in MATSEQSBAIJ format.\n"; #include int main(int argc, char **args) { PetscMPIInt size; Vec x, y, b, s1, s2; Mat A; /* linear system matrix */ Mat sA, sB, sFactor, B, C; /* symmetric matrices */ PetscInt n, mbs = 16, bs = 1, nz = 3, prob = 1, i, j, k1, k2, col[3], lf, block, row, Ii, J, n1, inc; PetscReal norm1, norm2, rnorm, tol = 10 * PETSC_SMALL; PetscScalar neg_one = -1.0, four = 4.0, value[3]; IS perm, iscol; PetscRandom rdm; PetscBool doIcc = PETSC_TRUE, equal; MatInfo minfo1, minfo2; MatFactorInfo factinfo; MatType type; PetscFunctionBeginUser; PetscCall(PetscInitialize(&argc, &args, NULL, help)); PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD, &size)); PetscCheck(size == 1, PETSC_COMM_WORLD, PETSC_ERR_WRONG_MPI_SIZE, "This is a uniprocessor example only!"); PetscCall(PetscOptionsGetInt(NULL, NULL, "-bs", &bs, NULL)); PetscCall(PetscOptionsGetInt(NULL, NULL, "-mbs", &mbs, NULL)); n = mbs * bs; PetscCall(MatCreate(PETSC_COMM_SELF, &A)); PetscCall(MatSetSizes(A, n, n, PETSC_DETERMINE, PETSC_DETERMINE)); PetscCall(MatSetType(A, MATSEQBAIJ)); PetscCall(MatSetFromOptions(A)); PetscCall(MatSeqBAIJSetPreallocation(A, bs, nz, NULL)); PetscCall(MatCreate(PETSC_COMM_SELF, &sA)); PetscCall(MatSetSizes(sA, n, n, PETSC_DETERMINE, PETSC_DETERMINE)); PetscCall(MatSetType(sA, MATSEQSBAIJ)); PetscCall(MatSetFromOptions(sA)); PetscCall(MatGetType(sA, &type)); PetscCall(PetscObjectTypeCompare((PetscObject)sA, MATSEQSBAIJ, &doIcc)); PetscCall(MatSeqSBAIJSetPreallocation(sA, bs, nz, NULL)); PetscCall(MatSetOption(sA, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); /* Test MatGetOwnershipRange() */ PetscCall(MatGetOwnershipRange(A, &Ii, &J)); PetscCall(MatGetOwnershipRange(sA, &i, &j)); if (i - Ii || j - J) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error: MatGetOwnershipRange() in MatSBAIJ format\n")); /* Assemble matrix */ if (bs == 1) { PetscCall(PetscOptionsGetInt(NULL, NULL, "-test_problem", &prob, NULL)); if (prob == 1) { /* tridiagonal matrix */ value[0] = -1.0; value[1] = 2.0; value[2] = -1.0; for (i = 1; i < n - 1; i++) { col[0] = i - 1; col[1] = i; col[2] = i + 1; PetscCall(MatSetValues(A, 1, &i, 3, col, value, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &i, 3, col, value, INSERT_VALUES)); } i = n - 1; col[0] = 0; col[1] = n - 2; col[2] = n - 1; value[0] = 0.1; value[1] = -1; value[2] = 2; PetscCall(MatSetValues(A, 1, &i, 3, col, value, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &i, 3, col, value, INSERT_VALUES)); i = 0; col[0] = n - 1; col[1] = 1; col[2] = 0; value[0] = 0.1; value[1] = -1.0; value[2] = 2; PetscCall(MatSetValues(A, 1, &i, 3, col, value, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &i, 3, col, value, INSERT_VALUES)); } else if (prob == 2) { /* matrix for the five point stencil */ n1 = (PetscInt)(PetscSqrtReal((PetscReal)n) + 0.001); PetscCheck(n1 * n1 == n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "sqrt(n) must be a positive integer!"); for (i = 0; i < n1; i++) { for (j = 0; j < n1; j++) { Ii = j + n1 * i; if (i > 0) { J = Ii - n1; PetscCall(MatSetValues(A, 1, &Ii, 1, &J, &neg_one, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &Ii, 1, &J, &neg_one, INSERT_VALUES)); } if (i < n1 - 1) { J = Ii + n1; PetscCall(MatSetValues(A, 1, &Ii, 1, &J, &neg_one, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &Ii, 1, &J, &neg_one, INSERT_VALUES)); } if (j > 0) { J = Ii - 1; PetscCall(MatSetValues(A, 1, &Ii, 1, &J, &neg_one, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &Ii, 1, &J, &neg_one, INSERT_VALUES)); } if (j < n1 - 1) { J = Ii + 1; PetscCall(MatSetValues(A, 1, &Ii, 1, &J, &neg_one, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &Ii, 1, &J, &neg_one, INSERT_VALUES)); } PetscCall(MatSetValues(A, 1, &Ii, 1, &Ii, &four, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &Ii, 1, &Ii, &four, INSERT_VALUES)); } } } } else { /* bs > 1 */ for (block = 0; block < n / bs; block++) { /* diagonal blocks */ value[0] = -1.0; value[1] = 4.0; value[2] = -1.0; for (i = 1 + block * bs; i < bs - 1 + block * bs; i++) { col[0] = i - 1; col[1] = i; col[2] = i + 1; PetscCall(MatSetValues(A, 1, &i, 3, col, value, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &i, 3, col, value, INSERT_VALUES)); } i = bs - 1 + block * bs; col[0] = bs - 2 + block * bs; col[1] = bs - 1 + block * bs; value[0] = -1.0; value[1] = 4.0; PetscCall(MatSetValues(A, 1, &i, 2, col, value, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &i, 2, col, value, INSERT_VALUES)); i = 0 + block * bs; col[0] = 0 + block * bs; col[1] = 1 + block * bs; value[0] = 4.0; value[1] = -1.0; PetscCall(MatSetValues(A, 1, &i, 2, col, value, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &i, 2, col, value, INSERT_VALUES)); } /* off-diagonal blocks */ value[0] = -1.0; for (i = 0; i < (n / bs - 1) * bs; i++) { col[0] = i + bs; PetscCall(MatSetValues(A, 1, &i, 1, col, value, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &i, 1, col, value, INSERT_VALUES)); col[0] = i; row = i + bs; PetscCall(MatSetValues(A, 1, &row, 1, col, value, INSERT_VALUES)); PetscCall(MatSetValues(sA, 1, &row, 1, col, value, INSERT_VALUES)); } } PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); PetscCall(MatAssemblyBegin(sA, MAT_FINAL_ASSEMBLY)); PetscCall(MatAssemblyEnd(sA, MAT_FINAL_ASSEMBLY)); /* Test MatGetInfo() of A and sA */ PetscCall(MatGetInfo(A, MAT_LOCAL, &minfo1)); PetscCall(MatGetInfo(sA, MAT_LOCAL, &minfo2)); i = (int)(minfo1.nz_used - minfo2.nz_used); j = (int)(minfo1.nz_allocated - minfo2.nz_allocated); k1 = (int)(minfo1.nz_allocated - minfo1.nz_used); k2 = (int)(minfo2.nz_allocated - minfo2.nz_used); if (i < 0 || j < 0 || k1 < 0 || k2 < 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error (compare A and sA): MatGetInfo()\n")); /* Test MatDuplicate() */ PetscCall(MatNorm(A, NORM_FROBENIUS, &norm1)); PetscCall(MatDuplicate(sA, MAT_COPY_VALUES, &sB)); PetscCall(MatEqual(sA, sB, &equal)); PetscCheck(equal, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMETYPE, "Error in MatDuplicate()"); /* Test MatNorm() */ PetscCall(MatNorm(A, NORM_FROBENIUS, &norm1)); PetscCall(MatNorm(sB, NORM_FROBENIUS, &norm2)); rnorm = PetscAbsReal(norm1 - norm2) / norm2; if (rnorm > tol) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error: MatNorm_FROBENIUS, NormA=%16.14e NormsB=%16.14e\n", (double)norm1, (double)norm2)); PetscCall(MatNorm(A, NORM_INFINITY, &norm1)); PetscCall(MatNorm(sB, NORM_INFINITY, &norm2)); rnorm = PetscAbsReal(norm1 - norm2) / norm2; if (rnorm > tol) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error: MatNorm_INFINITY(), NormA=%16.14e NormsB=%16.14e\n", (double)norm1, (double)norm2)); PetscCall(MatNorm(A, NORM_1, &norm1)); PetscCall(MatNorm(sB, NORM_1, &norm2)); rnorm = PetscAbsReal(norm1 - norm2) / norm2; if (rnorm > tol) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error: MatNorm_INFINITY(), NormA=%16.14e NormsB=%16.14e\n", (double)norm1, (double)norm2)); /* Test MatGetInfo(), MatGetSize(), MatGetBlockSize() */ PetscCall(MatGetInfo(A, MAT_LOCAL, &minfo1)); PetscCall(MatGetInfo(sB, MAT_LOCAL, &minfo2)); i = (int)(minfo1.nz_used - minfo2.nz_used); j = (int)(minfo1.nz_allocated - minfo2.nz_allocated); k1 = (int)(minfo1.nz_allocated - minfo1.nz_used); k2 = (int)(minfo2.nz_allocated - minfo2.nz_used); if (i < 0 || j < 0 || k1 < 0 || k2 < 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error(compare A and sB): MatGetInfo()\n")); PetscCall(MatGetSize(A, &Ii, &J)); PetscCall(MatGetSize(sB, &i, &j)); if (i - Ii || j - J) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error: MatGetSize()\n")); PetscCall(MatGetBlockSize(A, &Ii)); PetscCall(MatGetBlockSize(sB, &i)); if (i - Ii) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error: MatGetBlockSize()\n")); PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &rdm)); PetscCall(PetscRandomSetFromOptions(rdm)); PetscCall(VecCreateSeq(PETSC_COMM_SELF, n, &x)); PetscCall(VecDuplicate(x, &s1)); PetscCall(VecDuplicate(x, &s2)); PetscCall(VecDuplicate(x, &y)); PetscCall(VecDuplicate(x, &b)); PetscCall(VecSetRandom(x, rdm)); /* Test MatDiagonalScale(), MatGetDiagonal(), MatScale() */ #if !defined(PETSC_USE_COMPLEX) /* Scaling matrix with complex numbers results non-spd matrix, causing crash of MatForwardSolve() and MatBackwardSolve() */ PetscCall(MatDiagonalScale(A, x, x)); PetscCall(MatDiagonalScale(sB, x, x)); PetscCall(MatMultEqual(A, sB, 10, &equal)); PetscCheck(equal, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMETYPE, "Error in MatDiagonalScale"); PetscCall(MatGetDiagonal(A, s1)); PetscCall(MatGetDiagonal(sB, s2)); PetscCall(VecAXPY(s2, neg_one, s1)); PetscCall(VecNorm(s2, NORM_1, &norm1)); if (norm1 > tol) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error:MatGetDiagonal(), ||s1-s2||=%g\n", (double)norm1)); { PetscScalar alpha = 0.1; PetscCall(MatScale(A, alpha)); PetscCall(MatScale(sB, alpha)); } #endif /* Test MatGetRowMaxAbs() */ PetscCall(MatGetRowMaxAbs(A, s1, NULL)); PetscCall(MatGetRowMaxAbs(sB, s2, NULL)); PetscCall(VecNorm(s1, NORM_1, &norm1)); PetscCall(VecNorm(s2, NORM_1, &norm2)); norm1 -= norm2; if (norm1 < -tol || norm1 > tol) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error:MatGetRowMaxAbs() \n")); /* Test MatMult() */ for (i = 0; i < 40; i++) { PetscCall(VecSetRandom(x, rdm)); PetscCall(MatMult(A, x, s1)); PetscCall(MatMult(sB, x, s2)); PetscCall(VecNorm(s1, NORM_1, &norm1)); PetscCall(VecNorm(s2, NORM_1, &norm2)); norm1 -= norm2; if (norm1 < -tol || norm1 > tol) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error: MatMult(), norm1-norm2: %g\n", (double)norm1)); } /* MatMultAdd() */ for (i = 0; i < 40; i++) { PetscCall(VecSetRandom(x, rdm)); PetscCall(VecSetRandom(y, rdm)); PetscCall(MatMultAdd(A, x, y, s1)); PetscCall(MatMultAdd(sB, x, y, s2)); PetscCall(VecNorm(s1, NORM_1, &norm1)); PetscCall(VecNorm(s2, NORM_1, &norm2)); norm1 -= norm2; if (norm1 < -tol || norm1 > tol) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error:MatMultAdd(), norm1-norm2: %g\n", (double)norm1)); } /* Test MatMatMult() for sbaij and dense matrices */ PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, n, 5 * n, NULL, &B)); PetscCall(MatSetRandom(B, rdm)); PetscCall(MatMatMult(sA, B, MAT_INITIAL_MATRIX, PETSC_DETERMINE, &C)); PetscCall(MatMatMultEqual(sA, B, C, 5 * n, &equal)); PetscCheck(equal, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error: MatMatMult()"); PetscCall(MatDestroy(&C)); PetscCall(MatDestroy(&B)); /* Test MatCholeskyFactor(), MatICCFactor() with natural ordering */ PetscCall(MatGetOrdering(A, MATORDERINGNATURAL, &perm, &iscol)); PetscCall(ISDestroy(&iscol)); norm1 = tol; inc = bs; /* initialize factinfo */ PetscCall(PetscMemzero(&factinfo, sizeof(MatFactorInfo))); for (lf = -1; lf < 10; lf += inc) { if (lf == -1) { /* Cholesky factor of sB (duplicate sA) */ factinfo.fill = 5.0; PetscCall(MatGetFactor(sB, MATSOLVERPETSC, MAT_FACTOR_CHOLESKY, &sFactor)); PetscCall(MatCholeskyFactorSymbolic(sFactor, sB, perm, &factinfo)); } else if (!doIcc) break; else { /* incomplete Cholesky factor */ factinfo.fill = 5.0; factinfo.levels = lf; PetscCall(MatGetFactor(sB, MATSOLVERPETSC, MAT_FACTOR_ICC, &sFactor)); PetscCall(MatICCFactorSymbolic(sFactor, sB, perm, &factinfo)); } PetscCall(MatCholeskyFactorNumeric(sFactor, sB, &factinfo)); /* MatView(sFactor, PETSC_VIEWER_DRAW_WORLD); */ /* test MatGetDiagonal on numeric factor */ /* if (lf == -1) { PetscCall(MatGetDiagonal(sFactor,s1)); printf(" in ex74.c, diag: \n"); PetscCall(VecView(s1,PETSC_VIEWER_STDOUT_SELF)); } */ PetscCall(MatMult(sB, x, b)); /* test MatForwardSolve() and MatBackwardSolve() */ if (lf == -1) { PetscCall(MatForwardSolve(sFactor, b, s1)); PetscCall(MatBackwardSolve(sFactor, s1, s2)); PetscCall(VecAXPY(s2, neg_one, x)); PetscCall(VecNorm(s2, NORM_2, &norm2)); if (10 * norm1 < norm2) PetscCall(PetscPrintf(PETSC_COMM_SELF, "MatForwardSolve and BackwardSolve: Norm of error=%g, bs=%" PetscInt_FMT "\n", (double)norm2, bs)); } /* test MatSolve() */ PetscCall(MatSolve(sFactor, b, y)); PetscCall(MatDestroy(&sFactor)); /* Check the error */ PetscCall(VecAXPY(y, neg_one, x)); PetscCall(VecNorm(y, NORM_2, &norm2)); if (10 * norm1 < norm2 && lf - inc != -1) PetscCall(PetscPrintf(PETSC_COMM_SELF, "lf=%" PetscInt_FMT ", %" PetscInt_FMT ", Norm of error=%g, %g\n", lf - inc, lf, (double)norm1, (double)norm2)); norm1 = norm2; if (norm2 < tol && lf != -1) break; } #if defined(PETSC_HAVE_MUMPS) #if defined(PETSC_USE_REAL___FLOAT128) tol = 1e-10; // since MUMPS is run in double #endif PetscCall(MatGetFactor(sA, MATSOLVERMUMPS, MAT_FACTOR_CHOLESKY, &sFactor)); PetscCall(MatCholeskyFactorSymbolic(sFactor, sA, NULL, NULL)); PetscCall(MatCholeskyFactorNumeric(sFactor, sA, NULL)); for (i = 0; i < 10; i++) { PetscCall(VecSetRandom(b, rdm)); PetscCall(MatSolve(sFactor, b, y)); /* Check the error */ PetscCall(MatMult(sA, y, x)); PetscCall(VecAXPY(x, neg_one, b)); PetscCall(VecNorm(x, NORM_2, &norm2)); if (norm2 > tol) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error:MatSolve(), norm2: %g\n", (double)norm2)); } PetscCall(MatDestroy(&sFactor)); #endif PetscCall(ISDestroy(&perm)); PetscCall(MatDestroy(&A)); PetscCall(MatDestroy(&sB)); PetscCall(MatDestroy(&sA)); PetscCall(VecDestroy(&x)); PetscCall(VecDestroy(&y)); PetscCall(VecDestroy(&s1)); PetscCall(VecDestroy(&s2)); PetscCall(VecDestroy(&b)); PetscCall(PetscRandomDestroy(&rdm)); PetscCall(PetscFinalize()); return 0; } /*TEST test: args: -bs {{1 2 3 4 5 6 7 8}} output_file: output/empty.out TEST*/