static char help[] = "Tests the various sequential routines in MATSEQSBAIJ format.\n"; #include int main(int argc,char **args) { PetscMPIInt size; PetscErrorCode ierr; Vec x,y,b,s1,s2; Mat A; /* linear system matrix */ Mat sA,sB,sFactor,B,C; /* symmetric matrices */ PetscInt n,mbs=16,bs=1,nz=3,prob=1,i,j,k1,k2,col[3],lf,block, row,Ii,J,n1,inc; PetscReal norm1,norm2,rnorm,tol=10*PETSC_SMALL; PetscScalar neg_one=-1.0,four=4.0,value[3]; IS perm, iscol; PetscRandom rdm; PetscBool doIcc=PETSC_TRUE,equal; MatInfo minfo1,minfo2; MatFactorInfo factinfo; MatType type; ierr = PetscInitialize(&argc,&args,(char*)0,help);if (ierr) return ierr; ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRMPI(ierr); if (size != 1) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"This is a uniprocessor example only!"); ierr = PetscOptionsGetInt(NULL,NULL,"-bs",&bs,NULL);CHKERRQ(ierr); ierr = PetscOptionsGetInt(NULL,NULL,"-mbs",&mbs,NULL);CHKERRQ(ierr); n = mbs*bs; ierr = MatCreate(PETSC_COMM_SELF,&A);CHKERRQ(ierr); ierr = MatSetSizes(A,n,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); ierr = MatSetFromOptions(A);CHKERRQ(ierr); ierr = MatSeqBAIJSetPreallocation(A,bs,nz,NULL);CHKERRQ(ierr); ierr = MatCreate(PETSC_COMM_SELF,&sA);CHKERRQ(ierr); ierr = MatSetSizes(sA,n,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); ierr = MatSetType(sA,MATSEQSBAIJ);CHKERRQ(ierr); ierr = MatSetFromOptions(sA);CHKERRQ(ierr); ierr = MatGetType(sA,&type);CHKERRQ(ierr); ierr = PetscObjectTypeCompare((PetscObject)sA,MATSEQSBAIJ,&doIcc);CHKERRQ(ierr); ierr = MatSeqSBAIJSetPreallocation(sA,bs,nz,NULL);CHKERRQ(ierr); ierr = MatSetOption(sA,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); /* Test MatGetOwnershipRange() */ ierr = MatGetOwnershipRange(A,&Ii,&J);CHKERRQ(ierr); ierr = MatGetOwnershipRange(sA,&i,&j);CHKERRQ(ierr); if (i-Ii || j-J) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error: MatGetOwnershipRange() in MatSBAIJ format\n");CHKERRQ(ierr); } /* Assemble matrix */ if (bs == 1) { ierr = PetscOptionsGetInt(NULL,NULL,"-test_problem",&prob,NULL);CHKERRQ(ierr); if (prob == 1) { /* tridiagonal matrix */ value[0] = -1.0; value[1] = 2.0; value[2] = -1.0; for (i=1; i0) { J = Ii - n1; ierr = MatSetValues(A,1,&Ii,1,&J,&neg_one,INSERT_VALUES);CHKERRQ(ierr); ierr = MatSetValues(sA,1,&Ii,1,&J,&neg_one,INSERT_VALUES);CHKERRQ(ierr); } if (i0) { J = Ii - 1; ierr = MatSetValues(A,1,&Ii,1,&J,&neg_one,INSERT_VALUES);CHKERRQ(ierr); ierr = MatSetValues(sA,1,&Ii,1,&J,&neg_one,INSERT_VALUES);CHKERRQ(ierr); } if (j 1 */ for (block=0; block tol) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error: MatNorm_FROBENIUS, NormA=%16.14e NormsB=%16.14e\n",norm1,norm2);CHKERRQ(ierr); } ierr = MatNorm(A,NORM_INFINITY,&norm1);CHKERRQ(ierr); ierr = MatNorm(sB,NORM_INFINITY,&norm2);CHKERRQ(ierr); rnorm = PetscAbsReal(norm1-norm2)/norm2; if (rnorm > tol) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error: MatNorm_INFINITY(), NormA=%16.14e NormsB=%16.14e\n",norm1,norm2);CHKERRQ(ierr); } ierr = MatNorm(A,NORM_1,&norm1);CHKERRQ(ierr); ierr = MatNorm(sB,NORM_1,&norm2);CHKERRQ(ierr); rnorm = PetscAbsReal(norm1-norm2)/norm2; if (rnorm > tol) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error: MatNorm_INFINITY(), NormA=%16.14e NormsB=%16.14e\n",norm1,norm2);CHKERRQ(ierr); } /* Test MatGetInfo(), MatGetSize(), MatGetBlockSize() */ ierr = MatGetInfo(A,MAT_LOCAL,&minfo1);CHKERRQ(ierr); ierr = MatGetInfo(sB,MAT_LOCAL,&minfo2);CHKERRQ(ierr); i = (int) (minfo1.nz_used - minfo2.nz_used); j = (int) (minfo1.nz_allocated - minfo2.nz_allocated); k1 = (int) (minfo1.nz_allocated - minfo1.nz_used); k2 = (int) (minfo2.nz_allocated - minfo2.nz_used); if (i < 0 || j < 0 || k1 < 0 || k2 < 0) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error(compare A and sB): MatGetInfo()\n");CHKERRQ(ierr); } ierr = MatGetSize(A,&Ii,&J);CHKERRQ(ierr); ierr = MatGetSize(sB,&i,&j);CHKERRQ(ierr); if (i-Ii || j-J) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error: MatGetSize()\n");CHKERRQ(ierr); } ierr = MatGetBlockSize(A, &Ii);CHKERRQ(ierr); ierr = MatGetBlockSize(sB, &i);CHKERRQ(ierr); if (i-Ii) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error: MatGetBlockSize()\n");CHKERRQ(ierr); } ierr = PetscRandomCreate(PETSC_COMM_SELF,&rdm);CHKERRQ(ierr); ierr = PetscRandomSetFromOptions(rdm);CHKERRQ(ierr); ierr = VecCreateSeq(PETSC_COMM_SELF,n,&x);CHKERRQ(ierr); ierr = VecDuplicate(x,&s1);CHKERRQ(ierr); ierr = VecDuplicate(x,&s2);CHKERRQ(ierr); ierr = VecDuplicate(x,&y);CHKERRQ(ierr); ierr = VecDuplicate(x,&b);CHKERRQ(ierr); ierr = VecSetRandom(x,rdm);CHKERRQ(ierr); /* Test MatDiagonalScale(), MatGetDiagonal(), MatScale() */ #if !defined(PETSC_USE_COMPLEX) /* Scaling matrix with complex numbers results non-spd matrix, causing crash of MatForwardSolve() and MatBackwardSolve() */ ierr = MatDiagonalScale(A,x,x);CHKERRQ(ierr); ierr = MatDiagonalScale(sB,x,x);CHKERRQ(ierr); ierr = MatMultEqual(A,sB,10,&equal);CHKERRQ(ierr); if (!equal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMETYPE,"Error in MatDiagonalScale"); ierr = MatGetDiagonal(A,s1);CHKERRQ(ierr); ierr = MatGetDiagonal(sB,s2);CHKERRQ(ierr); ierr = VecAXPY(s2,neg_one,s1);CHKERRQ(ierr); ierr = VecNorm(s2,NORM_1,&norm1);CHKERRQ(ierr); if (norm1>tol) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error:MatGetDiagonal(), ||s1-s2||=%g\n",(double)norm1);CHKERRQ(ierr); } { PetscScalar alpha=0.1; ierr = MatScale(A,alpha);CHKERRQ(ierr); ierr = MatScale(sB,alpha);CHKERRQ(ierr); } #endif /* Test MatGetRowMaxAbs() */ ierr = MatGetRowMaxAbs(A,s1,NULL);CHKERRQ(ierr); ierr = MatGetRowMaxAbs(sB,s2,NULL);CHKERRQ(ierr); ierr = VecNorm(s1,NORM_1,&norm1);CHKERRQ(ierr); ierr = VecNorm(s2,NORM_1,&norm2);CHKERRQ(ierr); norm1 -= norm2; if (norm1<-tol || norm1>tol) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error:MatGetRowMaxAbs() \n");CHKERRQ(ierr); } /* Test MatMult() */ for (i=0; i<40; i++) { ierr = VecSetRandom(x,rdm);CHKERRQ(ierr); ierr = MatMult(A,x,s1);CHKERRQ(ierr); ierr = MatMult(sB,x,s2);CHKERRQ(ierr); ierr = VecNorm(s1,NORM_1,&norm1);CHKERRQ(ierr); ierr = VecNorm(s2,NORM_1,&norm2);CHKERRQ(ierr); norm1 -= norm2; if (norm1<-tol || norm1>tol) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error: MatMult(), norm1-norm2: %g\n",(double)norm1);CHKERRQ(ierr); } } /* MatMultAdd() */ for (i=0; i<40; i++) { ierr = VecSetRandom(x,rdm);CHKERRQ(ierr); ierr = VecSetRandom(y,rdm);CHKERRQ(ierr); ierr = MatMultAdd(A,x,y,s1);CHKERRQ(ierr); ierr = MatMultAdd(sB,x,y,s2);CHKERRQ(ierr); ierr = VecNorm(s1,NORM_1,&norm1);CHKERRQ(ierr); ierr = VecNorm(s2,NORM_1,&norm2);CHKERRQ(ierr); norm1 -= norm2; if (norm1<-tol || norm1>tol) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error:MatMultAdd(), norm1-norm2: %g\n",(double)norm1);CHKERRQ(ierr); } } /* Test MatMatMult() for sbaij and dense matrices */ ierr = MatCreateSeqDense(PETSC_COMM_SELF,n,5*n,NULL,&B);CHKERRQ(ierr); ierr = MatSetRandom(B,rdm);CHKERRQ(ierr); ierr = MatMatMult(sA,B,MAT_INITIAL_MATRIX,PETSC_DEFAULT,&C);CHKERRQ(ierr); ierr = MatMatMultEqual(sA,B,C,5*n,&equal);CHKERRQ(ierr); if (!equal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Error: MatMatMult()"); ierr = MatDestroy(&C);CHKERRQ(ierr); ierr = MatDestroy(&B);CHKERRQ(ierr); /* Test MatCholeskyFactor(), MatICCFactor() with natural ordering */ ierr = MatGetOrdering(A,MATORDERINGNATURAL,&perm,&iscol);CHKERRQ(ierr); ierr = ISDestroy(&iscol);CHKERRQ(ierr); norm1 = tol; inc = bs; /* initialize factinfo */ ierr = PetscMemzero(&factinfo,sizeof(MatFactorInfo));CHKERRQ(ierr); for (lf=-1; lf<10; lf += inc) { if (lf==-1) { /* Cholesky factor of sB (duplicate sA) */ factinfo.fill = 5.0; ierr = MatGetFactor(sB,MATSOLVERPETSC,MAT_FACTOR_CHOLESKY,&sFactor);CHKERRQ(ierr); ierr = MatCholeskyFactorSymbolic(sFactor,sB,perm,&factinfo);CHKERRQ(ierr); } else if (!doIcc) break; else { /* incomplete Cholesky factor */ factinfo.fill = 5.0; factinfo.levels = lf; ierr = MatGetFactor(sB,MATSOLVERPETSC,MAT_FACTOR_ICC,&sFactor);CHKERRQ(ierr); ierr = MatICCFactorSymbolic(sFactor,sB,perm,&factinfo);CHKERRQ(ierr); } ierr = MatCholeskyFactorNumeric(sFactor,sB,&factinfo);CHKERRQ(ierr); /* MatView(sFactor, PETSC_VIEWER_DRAW_WORLD); */ /* test MatGetDiagonal on numeric factor */ /* if (lf == -1) { ierr = MatGetDiagonal(sFactor,s1);CHKERRQ(ierr); printf(" in ex74.c, diag: \n"); ierr = VecView(s1,PETSC_VIEWER_STDOUT_SELF);CHKERRQ(ierr); } */ ierr = MatMult(sB,x,b);CHKERRQ(ierr); /* test MatForwardSolve() and MatBackwardSolve() */ if (lf == -1) { ierr = MatForwardSolve(sFactor,b,s1);CHKERRQ(ierr); ierr = MatBackwardSolve(sFactor,s1,s2);CHKERRQ(ierr); ierr = VecAXPY(s2,neg_one,x);CHKERRQ(ierr); ierr = VecNorm(s2,NORM_2,&norm2);CHKERRQ(ierr); if (10*norm1 < norm2) { ierr = PetscPrintf(PETSC_COMM_SELF,"MatForwardSolve and BackwardSolve: Norm of error=%g, bs=%D\n",(double)norm2,bs);CHKERRQ(ierr); } } /* test MatSolve() */ ierr = MatSolve(sFactor,b,y);CHKERRQ(ierr); ierr = MatDestroy(&sFactor);CHKERRQ(ierr); /* Check the error */ ierr = VecAXPY(y,neg_one,x);CHKERRQ(ierr); ierr = VecNorm(y,NORM_2,&norm2);CHKERRQ(ierr); if (10*norm1 < norm2 && lf-inc != -1) { ierr = PetscPrintf(PETSC_COMM_SELF,"lf=%D, %D, Norm of error=%g, %g\n",lf-inc,lf,(double)norm1,(double)norm2);CHKERRQ(ierr); } norm1 = norm2; if (norm2 < tol && lf != -1) break; } #if defined(PETSC_HAVE_MUMPS) ierr = MatGetFactor(sA,MATSOLVERMUMPS,MAT_FACTOR_CHOLESKY,&sFactor);CHKERRQ(ierr); ierr = MatCholeskyFactorSymbolic(sFactor,sA,NULL,NULL);CHKERRQ(ierr); ierr = MatCholeskyFactorNumeric(sFactor,sA,NULL);CHKERRQ(ierr); for (i=0; i<10; i++) { ierr = VecSetRandom(b,rdm);CHKERRQ(ierr); ierr = MatSolve(sFactor,b,y);CHKERRQ(ierr); /* Check the error */ ierr = MatMult(sA,y,x);CHKERRQ(ierr); ierr = VecAXPY(x,neg_one,b);CHKERRQ(ierr); ierr = VecNorm(x,NORM_2,&norm2);CHKERRQ(ierr); if (norm2>tol) { ierr = PetscPrintf(PETSC_COMM_SELF,"Error:MatSolve(), norm2: %g\n",(double)norm2);CHKERRQ(ierr); } } ierr = MatDestroy(&sFactor);CHKERRQ(ierr); #endif ierr = ISDestroy(&perm);CHKERRQ(ierr); ierr = MatDestroy(&A);CHKERRQ(ierr); ierr = MatDestroy(&sB);CHKERRQ(ierr); ierr = MatDestroy(&sA);CHKERRQ(ierr); ierr = VecDestroy(&x);CHKERRQ(ierr); ierr = VecDestroy(&y);CHKERRQ(ierr); ierr = VecDestroy(&s1);CHKERRQ(ierr); ierr = VecDestroy(&s2);CHKERRQ(ierr); ierr = VecDestroy(&b);CHKERRQ(ierr); ierr = PetscRandomDestroy(&rdm);CHKERRQ(ierr); ierr = PetscFinalize(); return ierr; } /*TEST test: args: -bs {{1 2 3 4 5 6 7 8}} TEST*/