static char help[] = "Partition a tiny grid using hierarchical partitioning.\n\n"; /* Include "petscmat.h" so that we can use matrices. Note that this file automatically includes: petscsys.h - base PETSc routines petscvec.h - vectors petscmat.h - matrices petscis.h - index sets petscviewer.h - viewers */ #include int main(int argc, char **args) { Mat A; PetscMPIInt rank, size; PetscInt *ia, *ja; MatPartitioning part; IS is, isn, isrows; IS coarseparts, fineparts; MPI_Comm comm; PetscFunctionBeginUser; PetscCall(PetscInitialize(&argc, &args, NULL, help)); comm = PETSC_COMM_WORLD; PetscCallMPI(MPI_Comm_size(comm, &size)); PetscCheck(size == 4, comm, PETSC_ERR_WRONG_MPI_SIZE, "Must run with 4 processors"); PetscCallMPI(MPI_Comm_rank(comm, &rank)); PetscCall(PetscMalloc1(5, &ia)); PetscCall(PetscMalloc1(16, &ja)); if (rank == 0) { ja[0] = 1; ja[1] = 4; ja[2] = 0; ja[3] = 2; ja[4] = 5; ja[5] = 1; ja[6] = 3; ja[7] = 6; ja[8] = 2; ja[9] = 7; ia[0] = 0; ia[1] = 2; ia[2] = 5; ia[3] = 8; ia[4] = 10; } else if (rank == 1) { ja[0] = 0; ja[1] = 5; ja[2] = 8; ja[3] = 1; ja[4] = 4; ja[5] = 6; ja[6] = 9; ja[7] = 2; ja[8] = 5; ja[9] = 7; ja[10] = 10; ja[11] = 3; ja[12] = 6; ja[13] = 11; ia[0] = 0; ia[1] = 3; ia[2] = 7; ia[3] = 11; ia[4] = 14; } else if (rank == 2) { ja[0] = 4; ja[1] = 9; ja[2] = 12; ja[3] = 5; ja[4] = 8; ja[5] = 10; ja[6] = 13; ja[7] = 6; ja[8] = 9; ja[9] = 11; ja[10] = 14; ja[11] = 7; ja[12] = 10; ja[13] = 15; ia[0] = 0; ia[1] = 3; ia[2] = 7; ia[3] = 11; ia[4] = 14; } else { ja[0] = 8; ja[1] = 13; ja[2] = 9; ja[3] = 12; ja[4] = 14; ja[5] = 10; ja[6] = 13; ja[7] = 15; ja[8] = 11; ja[9] = 14; ia[0] = 0; ia[1] = 2; ia[2] = 5; ia[3] = 8; ia[4] = 10; } PetscCall(MatCreateMPIAdj(comm, 4, 16, ia, ja, NULL, &A)); PetscCall(MatView(A, PETSC_VIEWER_STDOUT_WORLD)); /* Partition the graph of the matrix */ PetscCall(MatPartitioningCreate(comm, &part)); PetscCall(MatPartitioningSetAdjacency(part, A)); PetscCall(MatPartitioningSetType(part, MATPARTITIONINGHIERARCH)); PetscCall(MatPartitioningHierarchicalSetNcoarseparts(part, 2)); PetscCall(MatPartitioningHierarchicalSetNfineparts(part, 2)); PetscCall(MatPartitioningSetFromOptions(part)); /* get new processor owner number of each vertex */ PetscCall(MatPartitioningApply(part, &is)); /* coarse parts */ PetscCall(MatPartitioningHierarchicalGetCoarseparts(part, &coarseparts)); PetscCall(ISView(coarseparts, PETSC_VIEWER_STDOUT_WORLD)); /* fine parts */ PetscCall(MatPartitioningHierarchicalGetFineparts(part, &fineparts)); PetscCall(ISView(fineparts, PETSC_VIEWER_STDOUT_WORLD)); /* partitioning */ PetscCall(ISView(is, PETSC_VIEWER_STDOUT_WORLD)); /* get new global number of each old global number */ PetscCall(ISPartitioningToNumbering(is, &isn)); PetscCall(ISView(isn, PETSC_VIEWER_STDOUT_WORLD)); PetscCall(ISBuildTwoSided(is, NULL, &isrows)); PetscCall(ISView(isrows, PETSC_VIEWER_STDOUT_WORLD)); PetscCall(ISDestroy(&is)); PetscCall(ISDestroy(&coarseparts)); PetscCall(ISDestroy(&fineparts)); PetscCall(ISDestroy(&isrows)); PetscCall(ISDestroy(&isn)); PetscCall(MatPartitioningDestroy(&part)); /* Free work space. All PETSc objects should be destroyed when they are no longer needed. */ PetscCall(MatDestroy(&A)); PetscCall(PetscFinalize()); return 0; } /*TEST test: nsize: 4 requires: parmetis TODO: tests cannot use parmetis because it produces different results on different machines TEST*/