static char help[] = "Partition a tiny grid using hierarchical partitioning.\n\n"; /* Include "petscmat.h" so that we can use matrices. Note that this file automatically includes: petscsys.h - base PETSc routines petscvec.h - vectors petscmat.h - matrices petscis.h - index sets petscviewer.h - viewers */ #include int main(int argc,char **args) { Mat A; PetscMPIInt rank,size; PetscInt *ia,*ja; MatPartitioning part; IS is,isn,isrows; IS coarseparts,fineparts; MPI_Comm comm; PetscCall(PetscInitialize(&argc,&args,(char*)0,help)); comm = PETSC_COMM_WORLD; PetscCallMPI(MPI_Comm_size(comm,&size)); PetscCheck(size == 4,comm,PETSC_ERR_WRONG_MPI_SIZE,"Must run with 4 processors"); PetscCallMPI(MPI_Comm_rank(comm,&rank)); PetscCall(PetscMalloc1(5,&ia)); PetscCall(PetscMalloc1(16,&ja)); if (rank == 0) { ja[0] = 1; ja[1] = 4; ja[2] = 0; ja[3] = 2; ja[4] = 5; ja[5] = 1; ja[6] = 3; ja[7] = 6; ja[8] = 2; ja[9] = 7; ia[0] = 0; ia[1] = 2; ia[2] = 5; ia[3] = 8; ia[4] = 10; } else if (rank == 1) { ja[0] = 0; ja[1] = 5; ja[2] = 8; ja[3] = 1; ja[4] = 4; ja[5] = 6; ja[6] = 9; ja[7] = 2; ja[8] = 5; ja[9] = 7; ja[10] = 10; ja[11] = 3; ja[12] = 6; ja[13] = 11; ia[0] = 0; ia[1] = 3; ia[2] = 7; ia[3] = 11; ia[4] = 14; } else if (rank == 2) { ja[0] = 4; ja[1] = 9; ja[2] = 12; ja[3] = 5; ja[4] = 8; ja[5] = 10; ja[6] = 13; ja[7] = 6; ja[8] = 9; ja[9] = 11; ja[10] = 14; ja[11] = 7; ja[12] = 10; ja[13] = 15; ia[0] = 0; ia[1] = 3; ia[2] = 7; ia[3] = 11; ia[4] = 14; } else { ja[0] = 8; ja[1] = 13; ja[2] = 9; ja[3] = 12; ja[4] = 14; ja[5] = 10; ja[6] = 13; ja[7] = 15; ja[8] = 11; ja[9] = 14; ia[0] = 0; ia[1] = 2; ia[2] = 5; ia[3] = 8; ia[4] = 10; } PetscCall(MatCreateMPIAdj(comm,4,16,ia,ja,NULL,&A)); PetscCall(MatView(A,PETSC_VIEWER_STDOUT_WORLD)); /* Partition the graph of the matrix */ PetscCall(MatPartitioningCreate(comm,&part)); PetscCall(MatPartitioningSetAdjacency(part,A)); PetscCall(MatPartitioningSetType(part,MATPARTITIONINGHIERARCH)); PetscCall(MatPartitioningHierarchicalSetNcoarseparts(part,2)); PetscCall(MatPartitioningHierarchicalSetNfineparts(part,2)); PetscCall(MatPartitioningSetFromOptions(part)); /* get new processor owner number of each vertex */ PetscCall(MatPartitioningApply(part,&is)); /* coarse parts */ PetscCall(MatPartitioningHierarchicalGetCoarseparts(part,&coarseparts)); PetscCall(ISView(coarseparts,PETSC_VIEWER_STDOUT_WORLD)); /* fine parts */ PetscCall(MatPartitioningHierarchicalGetFineparts(part,&fineparts)); PetscCall(ISView(fineparts,PETSC_VIEWER_STDOUT_WORLD)); /* partitioning */ PetscCall(ISView(is,PETSC_VIEWER_STDOUT_WORLD)); /* get new global number of each old global number */ PetscCall(ISPartitioningToNumbering(is,&isn)); PetscCall(ISView(isn,PETSC_VIEWER_STDOUT_WORLD)); PetscCall(ISBuildTwoSided(is,NULL,&isrows)); PetscCall(ISView(isrows,PETSC_VIEWER_STDOUT_WORLD)); PetscCall(ISDestroy(&is)); PetscCall(ISDestroy(&coarseparts)); PetscCall(ISDestroy(&fineparts)); PetscCall(ISDestroy(&isrows)); PetscCall(ISDestroy(&isn)); PetscCall(MatPartitioningDestroy(&part)); /* Free work space. All PETSc objects should be destroyed when they are no longer needed. */ PetscCall(MatDestroy(&A)); PetscCall(PetscFinalize()); return 0; } /*TEST test: nsize: 4 requires: parmetis TODO: tests cannot use parmetis because it produces different results on different machines TEST*/