#include #define NNORMS 6 static PetscErrorCode MatLoadComputeNorms(Mat data_mat, PetscViewer inp_viewer, PetscReal norms[]) { Mat corr_mat; PetscInt M,N; PetscFunctionBegin; CHKERRQ(MatLoad(data_mat, inp_viewer)); CHKERRQ(MatAssemblyBegin(data_mat, MAT_FINAL_ASSEMBLY)); CHKERRQ(MatAssemblyEnd(data_mat, MAT_FINAL_ASSEMBLY)); CHKERRQ(MatViewFromOptions(data_mat, NULL, "-view_mat")); CHKERRQ(MatGetSize(data_mat, &M, &N)); CHKERRQ(PetscPrintf(PETSC_COMM_WORLD, "Data matrix size: %" PetscInt_FMT " %" PetscInt_FMT "\n", M,N)); /* compute matrix norms */ CHKERRQ(MatNorm(data_mat, NORM_1, &norms[0])); CHKERRQ(MatNorm(data_mat, NORM_INFINITY, &norms[1])); CHKERRQ(MatNorm(data_mat, NORM_FROBENIUS, &norms[2])); CHKERRQ(PetscPrintf(PETSC_COMM_WORLD, "Data matrix norms: %g %g %g\n", (double)norms[0],(double)norms[1],(double)norms[2])); /* compute autocorrelation matrix */ CHKERRQ(MatMatTransposeMult(data_mat, data_mat, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &corr_mat)); /* compute autocorrelation matrix norms */ CHKERRQ(MatNorm(corr_mat, NORM_1, &norms[3])); CHKERRQ(MatNorm(corr_mat, NORM_INFINITY, &norms[4])); CHKERRQ(MatNorm(corr_mat, NORM_FROBENIUS, &norms[5])); CHKERRQ(PetscPrintf(PETSC_COMM_WORLD, "Autocorrelation matrix norms: %g %g %g\n", (double)norms[3],(double)norms[4],(double)norms[5])); CHKERRQ(MatDestroy(&corr_mat)); PetscFunctionReturn(0); } static PetscErrorCode GetReader(MPI_Comm comm, const char option[], PetscViewer *r, PetscViewerFormat *fmt) { PetscBool flg; PetscFunctionBegin; CHKERRQ(PetscOptionsGetViewer(PETSC_COMM_SELF, NULL, NULL, option, r, fmt, &flg)); if (flg) { PetscFileMode mode; CHKERRQ(PetscViewerFileGetMode(*r, &mode)); flg = (PetscBool) (mode == FILE_MODE_READ); } PetscCheck(flg,PETSC_COMM_WORLD,PETSC_ERR_USER_INPUT,"Need to specify %s viewer_type:file:format:read", option); PetscFunctionReturn(0); } int main(int argc, char **argv) { PetscErrorCode ierr; PetscInt i; PetscReal norms0[NNORMS], norms1[NNORMS]; PetscViewer inp_viewer; PetscViewerFormat fmt; Mat data_mat; char mat_name[PETSC_MAX_PATH_LEN]="dmatrix"; ierr = PetscInitialize(&argc, &argv, NULL, NULL);if (ierr) return ierr; CHKERRQ(PetscOptionsGetString(NULL,NULL,"-mat_name",mat_name,sizeof(mat_name),NULL)); /* load matrix sequentially */ CHKERRQ(MatCreate(PETSC_COMM_SELF, &data_mat)); CHKERRQ(MatSetType(data_mat,MATDENSE)); CHKERRQ(PetscObjectSetName((PetscObject)data_mat, mat_name)); CHKERRQ(GetReader(PETSC_COMM_SELF, "-serial_reader", &inp_viewer, &fmt)); CHKERRQ(PetscViewerPushFormat(inp_viewer, fmt)); CHKERRQ(MatLoadComputeNorms(data_mat, inp_viewer, norms0)); CHKERRQ(PetscViewerPopFormat(inp_viewer)); CHKERRQ(PetscViewerDestroy(&inp_viewer)); CHKERRQ(MatViewFromOptions(data_mat, NULL, "-view_serial_mat")); CHKERRQ(MatDestroy(&data_mat)); /* load matrix in parallel */ CHKERRQ(MatCreate(PETSC_COMM_WORLD, &data_mat)); CHKERRQ(MatSetType(data_mat,MATDENSE)); CHKERRQ(PetscObjectSetName((PetscObject)data_mat, mat_name)); CHKERRQ(GetReader(PETSC_COMM_WORLD, "-parallel_reader", &inp_viewer, &fmt)); CHKERRQ(PetscViewerPushFormat(inp_viewer, fmt)); CHKERRQ(MatLoadComputeNorms(data_mat, inp_viewer, norms1)); CHKERRQ(PetscViewerPopFormat(inp_viewer)); CHKERRQ(PetscViewerDestroy(&inp_viewer)); CHKERRQ(MatViewFromOptions(data_mat, NULL, "-view_parallel_mat")); CHKERRQ(MatDestroy(&data_mat)); for (i=0; i PETSC_SMALL,PETSC_COMM_SELF, PETSC_ERR_PLIB, "norm0[%" PetscInt_FMT "] = %g != %g = norms1[%" PetscInt_FMT "]", i, (double)norms0[i], (double)norms1[i], i); } ierr = PetscFinalize(); return ierr; } /*TEST test: suffix: 1 requires: hdf5 datafilespath complex args: -serial_reader hdf5:${DATAFILESPATH}/matrices/hdf5/sample_data.h5::read -parallel_reader hdf5:${DATAFILESPATH}/matrices/hdf5/sample_data.h5::read nsize: {{1 2 4}} test: requires: hdf5 datafilespath args: -serial_reader hdf5:${DATAFILESPATH}/matrices/hdf5/tiny_rectangular_mat.h5::read -parallel_reader hdf5:${DATAFILESPATH}/matrices/hdf5/tiny_rectangular_mat.h5::read nsize: {{1 2}} test: suffix: 2-complex requires: complex args: -mat_name ComplexMat test: suffix: 2-real requires: !complex args: -mat_name RealMat TEST*/