static char help[] = "Example of using graph partitioning to partition a graph\n\n"; #include int main(int argc, char **args) { Mat A; MatPartitioning part; IS is; PetscInt r,N = 10, start, end, *vweights; PetscBool set_vweights=PETSC_FALSE,use_edge_weights=PETSC_FALSE; PetscMPIInt rank; MPI_Comm comm; PetscCall(PetscInitialize(&argc, &args, (char*) 0, help)); comm = PETSC_COMM_WORLD; PetscCall(PetscOptionsGetInt(NULL,NULL, "-N", &N, NULL)); PetscCallMPI(MPI_Comm_rank(comm,&rank)); PetscCall(MatCreate(comm, &A)); PetscCall(MatSetSizes(A, PETSC_DECIDE, PETSC_DECIDE, N, N)); PetscCall(MatSetFromOptions(A)); PetscCall(MatSeqAIJSetPreallocation(A, 3, NULL)); PetscCall(MatMPIAIJSetPreallocation(A, 3, NULL, 2, NULL)); PetscCall(PetscOptionsGetBool(NULL,NULL,"-test_vertex_weights",&set_vweights,NULL)); PetscCall(PetscOptionsGetBool(NULL,NULL,"-test_use_edge_weights",&use_edge_weights,NULL)); /* Create a linear mesh */ PetscCall(MatGetOwnershipRange(A, &start, &end)); if (set_vweights) { PetscCall(PetscMalloc1(end-start,&vweights)); for (r = start; r < end; ++r) vweights[r-start] = rank+1; } for (r = start; r < end; ++r) { if (r == 0) { PetscInt cols[2]; PetscScalar vals[2]; cols[0] = r; cols[1] = r+1; vals[0] = 1.0; vals[1] = use_edge_weights? 2.0: 1.0; PetscCall(MatSetValues(A, 1, &r, 2, cols, vals, INSERT_VALUES)); } else if (r == N-1) { PetscInt cols[2]; PetscScalar vals[2]; cols[0] = r-1; cols[1] = r; vals[0] = use_edge_weights? 3.0:1.0; vals[1] = 1.0; PetscCall(MatSetValues(A, 1, &r, 2, cols, vals, INSERT_VALUES)); } else { PetscInt cols[3]; PetscScalar vals[3]; cols[0] = r-1; cols[1] = r; cols[2] = r+1; /* ADJ matrix needs to be symmetric */ vals[0] = use_edge_weights? (cols[0]==0? 2.0:5.0):1.0; vals[1] = 1.0; vals[2] = use_edge_weights? (cols[2]==N-1? 3.0:5.0):1.0; PetscCall(MatSetValues(A, 1, &r, 3, cols, vals, INSERT_VALUES)); } } PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); PetscCall(MatPartitioningCreate(comm, &part)); PetscCall(MatPartitioningSetAdjacency(part, A)); if (set_vweights) PetscCall(MatPartitioningSetVertexWeights(part,vweights)); if (use_edge_weights) { PetscCall(MatPartitioningSetUseEdgeWeights(part,use_edge_weights)); PetscCall(MatPartitioningGetUseEdgeWeights(part,&use_edge_weights)); PetscCheck(use_edge_weights,comm,PETSC_ERR_ARG_INCOMP, "use_edge_weights flag does not setup correctly "); } PetscCall(MatPartitioningSetFromOptions(part)); PetscCall(MatPartitioningApply(part, &is)); PetscCall(ISView(is, PETSC_VIEWER_STDOUT_WORLD)); PetscCall(ISDestroy(&is)); PetscCall(MatPartitioningDestroy(&part)); PetscCall(MatDestroy(&A)); PetscCall(PetscFinalize()); return 0; } /*TEST test: nsize: 3 requires: parmetis args: -mat_partitioning_type parmetis test: suffix: 2 nsize: 3 requires: ptscotch args: -mat_partitioning_type ptscotch test: suffix: 3 nsize: 4 requires: party args: -mat_partitioning_type party test: suffix: 4 nsize: 3 requires: chaco args: -mat_partitioning_type chaco test: suffix: 5 nsize: 3 requires: parmetis args: -mat_partitioning_type hierarch -mat_partitioning_hierarchical_nfineparts 3 -mat_partitioning_nparts 10 -N 100 test: suffix: 6 nsize: 3 requires: parmetis args: -mat_partitioning_type hierarch -mat_partitioning_hierarchical_nfineparts 3 -mat_partitioning_nparts 10 -N 100 -test_vertex_weights 1 -mat_partitioning_use_edge_weights 1 test: suffix: 7 nsize: 2 requires: parmetis args: -mat_partitioning_type hierarch -mat_partitioning_hierarchical_nfineparts 2 -mat_partitioning_nparts 10 -mat_partitioning_hierarchical_fineparttype hierarch -malloc_dump -N 100 -mat_partitioning_improve 1 test: suffix: 8 nsize: 2 requires: parmetis args: -mat_partitioning_type parmetis -mat_partitioning_nparts 3 -test_use_edge_weights 1 test: suffix: 9 nsize: 2 requires: ptscotch args: -mat_partitioning_type ptscotch -mat_partitioning_nparts 3 -test_use_edge_weights 1 -mat_partitioning_ptscotch_proc_weight 0 TEST*/