#include /*I "petscsys.h" I*/ #include #include #include static PetscErrorCode PetscViewerSetFromOptions_ADIOS(PetscViewer v, PetscOptionItems *PetscOptionsObject) { PetscFunctionBegin; PetscOptionsHeadBegin(PetscOptionsObject, "ADIOS PetscViewer Options"); PetscOptionsHeadEnd(); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileClose_ADIOS(PetscViewer viewer) { PetscViewer_ADIOS *adios = (PetscViewer_ADIOS *)viewer->data; PetscFunctionBegin; switch (adios->btype) { case FILE_MODE_READ: PetscCallExternal(adios_read_close, adios->adios_fp); break; case FILE_MODE_WRITE: PetscCallExternal(adios_close, adios->adios_handle); break; default: break; } PetscCall(PetscFree(adios->filename)); PetscFunctionReturn(PETSC_SUCCESS); } PetscErrorCode PetscViewerDestroy_ADIOS(PetscViewer viewer) { PetscViewer_ADIOS *adios = (PetscViewer_ADIOS *)viewer->data; PetscFunctionBegin; PetscCall(PetscViewerFileClose_ADIOS(viewer)); PetscCall(PetscFree(adios)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileSetName_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileGetName_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileSetMode_C", NULL)); PetscFunctionReturn(PETSC_SUCCESS); } PetscErrorCode PetscViewerFileSetMode_ADIOS(PetscViewer viewer, PetscFileMode type) { PetscViewer_ADIOS *adios = (PetscViewer_ADIOS *)viewer->data; PetscFunctionBegin; adios->btype = type; PetscFunctionReturn(PETSC_SUCCESS); } PetscErrorCode PetscViewerFileSetName_ADIOS(PetscViewer viewer, const char name[]) { PetscViewer_ADIOS *adios = (PetscViewer_ADIOS *)viewer->data; PetscFunctionBegin; if (adios->filename) PetscCall(PetscFree(adios->filename)); PetscCall(PetscStrallocpy(name, &adios->filename)); /* Create or open the file collectively */ switch (adios->btype) { case FILE_MODE_READ: adios->adios_fp = adios_read_open_file(adios->filename, ADIOS_READ_METHOD_BP, PetscObjectComm((PetscObject)viewer)); break; case FILE_MODE_WRITE: adios_open(&adios->adios_handle, "PETSc", adios->filename, "w", PetscObjectComm((PetscObject)viewer)); break; case FILE_MODE_UNDEFINED: SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_ORDER, "Must call PetscViewerFileSetMode() before PetscViewerFileSetName()"); default: SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Unsupported file mode %s", PetscFileModes[adios->btype]); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileGetName_ADIOS(PetscViewer viewer, const char **name) { PetscViewer_ADIOS *vadios = (PetscViewer_ADIOS *)viewer->data; PetscFunctionBegin; *name = vadios->filename; PetscFunctionReturn(PETSC_SUCCESS); } /*MC PETSCVIEWERADIOS - A viewer that writes to an ADIOS file Level: beginner .seealso: `PetscViewerADIOSOpen()`, `PetscViewerStringSPrintf()`, `PetscViewerSocketOpen()`, `PetscViewerDrawOpen()`, `PETSCVIEWERSOCKET`, `PetscViewerCreate()`, `PetscViewerASCIIOpen()`, `PetscViewerBinaryOpen()`, `PETSCVIEWERBINARY`, `PETSCVIEWERDRAW`, `PETSCVIEWERSTRING`, `PetscViewerMatlabOpen()`, `VecView()`, `DMView()`, `PetscViewerMatlabPutArray()`, `PETSCVIEWERASCII`, `PETSCVIEWERMATLAB`, `PetscViewerFileSetName()`, `PetscViewerFileSetMode()`, `PetscViewerFormat`, `PetscViewerType`, `PetscViewerSetType()` M*/ PETSC_EXTERN PetscErrorCode PetscViewerCreate_ADIOS(PetscViewer v) { PetscViewer_ADIOS *adios; PetscFunctionBegin; PetscCall(PetscNew(&adios)); v->data = (void *)adios; v->ops->destroy = PetscViewerDestroy_ADIOS; v->ops->setfromoptions = PetscViewerSetFromOptions_ADIOS; v->ops->flush = NULL; adios->btype = FILE_MODE_UNDEFINED; adios->filename = NULL; adios->timestep = -1; PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetName_C", PetscViewerFileSetName_ADIOS)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetName_C", PetscViewerFileGetName_ADIOS)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetMode_C", PetscViewerFileSetMode_ADIOS)); PetscFunctionReturn(PETSC_SUCCESS); } /*@C PetscViewerADIOSOpen - Opens a file for ADIOS input/output. Collective Input Parameters: + comm - MPI communicator . name - name of file - type - type of file .vb FILE_MODE_WRITE - create new file for binary output FILE_MODE_READ - open existing file for binary input FILE_MODE_APPEND - open existing file for binary output .ve Output Parameter: . adiosv - `PetscViewer` for ADIOS input/output to use with the specified file Level: beginner Note: This `PetscViewer` should be destroyed with `PetscViewerDestroy()`. .seealso: `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, `PetscViewerHDF5Open()`, `VecView()`, `MatView()`, `VecLoad()`, `PetscViewerSetType()`, `PetscViewerFileSetMode()`, `PetscViewerFileSetName()` `MatLoad()`, `PetscFileMode`, `PetscViewer` @*/ PetscErrorCode PetscViewerADIOSOpen(MPI_Comm comm, const char name[], PetscFileMode type, PetscViewer *adiosv) { PetscFunctionBegin; PetscCall(PetscViewerCreate(comm, adiosv)); PetscCall(PetscViewerSetType(*adiosv, PETSCVIEWERADIOS)); PetscCall(PetscViewerFileSetMode(*adiosv, type)); PetscCall(PetscViewerFileSetName(*adiosv, name)); PetscFunctionReturn(PETSC_SUCCESS); } /*@C PetscDataTypeToADIOSDataType - Converts the PETSc name of a datatype to its ADIOS name. Not collective Input Parameter: . ptype - the PETSc datatype name (for example `PETSC_DOUBLE`) Output Parameter: . htype - the ADIOS datatype (for example MPI_DOUBLE, ...) Level: advanced .seealso: `PetscDataType`, `PetscADIOSDataTypeToPetscDataType()` @*/ PetscErrorCode PetscDataTypeToADIOSDataType(PetscDataType ptype, enum ADIOS_DATATYPES *htype) { PetscFunctionBegin; if (ptype == PETSC_INT) #if defined(PETSC_USE_64BIT_INDICES) *htype = adios_long; #else *htype = adios_integer; #endif else if (ptype == PETSC_ENUM) *htype = adios_integer; else if (ptype == PETSC_DOUBLE) *htype = adios_double; else if (ptype == PETSC_LONG) *htype = adios_long; else if (ptype == PETSC_SHORT) *htype = adios_short; else if (ptype == PETSC_FLOAT) *htype = adios_real; else if (ptype == PETSC_CHAR) *htype = adios_string_array; else if (ptype == PETSC_STRING) *htype = adios_string; else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PETSc datatype"); PetscFunctionReturn(PETSC_SUCCESS); } /*@C PetscADIOSDataTypeToPetscDataType - Finds the PETSc name of a datatype from its ADIOS name Not collective Input Parameter: . htype - the ADIOS datatype (for example H5T_NATIVE_DOUBLE, ...) Output Parameter: . ptype - the PETSc datatype name (for example `PETSC_DOUBLE`) Level: advanced .seealso: `PetscDataType` @*/ PetscErrorCode PetscADIOSDataTypeToPetscDataType(enum ADIOS_DATATYPES htype, PetscDataType *ptype) { PetscFunctionBegin; #if defined(PETSC_USE_64BIT_INDICES) if (htype == adios_integer) *ptype = PETSC_ENUM; else if (htype == adios_long) *ptype = PETSC_INT; #else if (htype == adios_integer) *ptype = PETSC_INT; #endif else if (htype == adios_double) *ptype = PETSC_DOUBLE; else if (htype == adios_long) *ptype = PETSC_LONG; else if (htype == adios_short) *ptype = PETSC_SHORT; else if (htype == adios_real) *ptype = PETSC_FLOAT; else if (htype == adios_string_array) *ptype = PETSC_CHAR; else if (htype == adios_string) *ptype = PETSC_STRING; else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported ADIOS datatype"); PetscFunctionReturn(PETSC_SUCCESS); }