#include /*I "petscsys.h" I*/ #include #include #include static PetscErrorCode PetscViewerSetFromOptions_ADIOS(PetscOptionItems *PetscOptionsObject,PetscViewer v) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscOptionsHead(PetscOptionsObject,"ADIOS PetscViewer Options");CHKERRQ(ierr); ierr = PetscOptionsTail();CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PetscViewerFileClose_ADIOS(PetscViewer viewer) { PetscViewer_ADIOS *adios = (PetscViewer_ADIOS*)viewer->data; PetscErrorCode ierr; PetscFunctionBegin; switch (adios->btype) { case FILE_MODE_READ: ierr = adios_read_close(adios->adios_fp);CHKERRQ(ierr); break; case FILE_MODE_WRITE: ierr = adios_close(adios->adios_handle);CHKERRQ(ierr); break; default: break; } ierr = PetscFree(adios->filename);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode PetscViewerDestroy_ADIOS(PetscViewer viewer) { PetscViewer_ADIOS *adios = (PetscViewer_ADIOS*) viewer->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscViewerFileClose_ADIOS(viewer);CHKERRQ(ierr); ierr = PetscFree(adios);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)viewer,"PetscViewerFileSetName_C",NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)viewer,"PetscViewerFileGetName_C",NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)viewer,"PetscViewerFileSetMode_C",NULL);CHKERRQ(ierr); PetscFunctionReturn(0); } PetscErrorCode PetscViewerFileSetMode_ADIOS(PetscViewer viewer, PetscFileMode type) { PetscViewer_ADIOS *adios = (PetscViewer_ADIOS*) viewer->data; PetscFunctionBegin; adios->btype = type; PetscFunctionReturn(0); } PetscErrorCode PetscViewerFileSetName_ADIOS(PetscViewer viewer, const char name[]) { PetscViewer_ADIOS *adios = (PetscViewer_ADIOS*) viewer->data; PetscErrorCode ierr; PetscFunctionBegin; if (adios->filename) {ierr = PetscFree(adios->filename);CHKERRQ(ierr);} ierr = PetscStrallocpy(name, &adios->filename);CHKERRQ(ierr); /* Create or open the file collectively */ switch (adios->btype) { case FILE_MODE_READ: adios->adios_fp = adios_read_open_file(adios->filename,ADIOS_READ_METHOD_BP,PetscObjectComm((PetscObject)viewer)); break; case FILE_MODE_WRITE: adios_open(&adios->adios_handle,"PETSc",adios->filename,"w",PetscObjectComm((PetscObject)viewer)); break; case FILE_MODE_UNDEFINED: SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_ORDER,"Must call PetscViewerFileSetMode() before PetscViewerFileSetName()"); default: SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Unsupported file mode %s",PetscFileModes[adios->btype]); } PetscFunctionReturn(0); } static PetscErrorCode PetscViewerFileGetName_ADIOS(PetscViewer viewer,const char **name) { PetscViewer_ADIOS *vadios = (PetscViewer_ADIOS*)viewer->data; PetscFunctionBegin; *name = vadios->filename; PetscFunctionReturn(0); } /*MC PETSCVIEWERADIOS - A viewer that writes to an ADIOS file .seealso: PetscViewerADIOSOpen(), PetscViewerStringSPrintf(), PetscViewerSocketOpen(), PetscViewerDrawOpen(), PETSCVIEWERSOCKET, PetscViewerCreate(), PetscViewerASCIIOpen(), PetscViewerBinaryOpen(), PETSCVIEWERBINARY, PETSCVIEWERDRAW, PETSCVIEWERSTRING, PetscViewerMatlabOpen(), VecView(), DMView(), PetscViewerMatlabPutArray(), PETSCVIEWERASCII, PETSCVIEWERMATLAB, PetscViewerFileSetName(), PetscViewerFileSetMode(), PetscViewerFormat, PetscViewerType, PetscViewerSetType() Level: beginner M*/ PETSC_EXTERN PetscErrorCode PetscViewerCreate_ADIOS(PetscViewer v) { PetscViewer_ADIOS *adios; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscNewLog(v,&adios);CHKERRQ(ierr); v->data = (void*) adios; v->ops->destroy = PetscViewerDestroy_ADIOS; v->ops->setfromoptions = PetscViewerSetFromOptions_ADIOS; v->ops->flush = NULL; adios->btype = FILE_MODE_UNDEFINED; adios->filename = NULL; adios->timestep = -1; ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetName_C",PetscViewerFileSetName_ADIOS);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileGetName_C",PetscViewerFileGetName_ADIOS);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetMode_C",PetscViewerFileSetMode_ADIOS);CHKERRQ(ierr); PetscFunctionReturn(0); } /*@C PetscViewerADIOSOpen - Opens a file for ADIOS input/output. Collective Input Parameters: + comm - MPI communicator . name - name of file - type - type of file $ FILE_MODE_WRITE - create new file for binary output $ FILE_MODE_READ - open existing file for binary input $ FILE_MODE_APPEND - open existing file for binary output Output Parameter: . adiosv - PetscViewer for ADIOS input/output to use with the specified file Level: beginner Note: This PetscViewer should be destroyed with PetscViewerDestroy(). .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(), PetscViewerHDF5Open(), VecView(), MatView(), VecLoad(), PetscViewerSetType(), PetscViewerFileSetMode(), PetscViewerFileSetName() MatLoad(), PetscFileMode, PetscViewer @*/ PetscErrorCode PetscViewerADIOSOpen(MPI_Comm comm, const char name[], PetscFileMode type, PetscViewer *adiosv) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscViewerCreate(comm, adiosv);CHKERRQ(ierr); ierr = PetscViewerSetType(*adiosv, PETSCVIEWERADIOS);CHKERRQ(ierr); ierr = PetscViewerFileSetMode(*adiosv, type);CHKERRQ(ierr); ierr = PetscViewerFileSetName(*adiosv, name);CHKERRQ(ierr); PetscFunctionReturn(0); } /*@C PetscDataTypeToADIOSDataType - Converts the PETSc name of a datatype to its ADIOS name. Not collective Input Parameter: . ptype - the PETSc datatype name (for example PETSC_DOUBLE) Output Parameter: . mtype - the MPI datatype (for example MPI_DOUBLE, ...) Level: advanced Developer Notes: These have not been verified .seealso: PetscDataType, PetscADIOSDataTypeToPetscDataType() @*/ PetscErrorCode PetscDataTypeToADIOSDataType(PetscDataType ptype, enum ADIOS_DATATYPES *htype) { PetscFunctionBegin; if (ptype == PETSC_INT) #if defined(PETSC_USE_64BIT_INDICES) *htype = adios_long; #else *htype = adios_integer; #endif else if (ptype == PETSC_ENUM) *htype = adios_integer; else if (ptype == PETSC_DOUBLE) *htype = adios_double; else if (ptype == PETSC_LONG) *htype = adios_long; else if (ptype == PETSC_SHORT) *htype = adios_short; else if (ptype == PETSC_FLOAT) *htype = adios_real; else if (ptype == PETSC_CHAR) *htype = adios_string_array; else if (ptype == PETSC_STRING) *htype = adios_string; else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PETSc datatype"); PetscFunctionReturn(0); } /*@C PetscADIOSDataTypeToPetscDataType - Finds the PETSc name of a datatype from its ADIOS name Not collective Input Parameter: . htype - the ADIOS datatype (for example H5T_NATIVE_DOUBLE, ...) Output Parameter: . ptype - the PETSc datatype name (for example PETSC_DOUBLE) Level: advanced Developer Notes: These have not been verified .seealso: PetscDataType, PetscADIOSDataTypeToPetscDataType() @*/ PetscErrorCode PetscADIOSDataTypeToPetscDataType(enum ADIOS_DATATYPES htype, PetscDataType *ptype) { PetscFunctionBegin; #if defined(PETSC_USE_64BIT_INDICES) if (htype == adios_integer) *ptype = PETSC_ENUM; else if (htype == adios_long) *ptype = PETSC_INT; #else if (htype == adios_integer) *ptype = PETSC_INT; #endif else if (htype == adios_double) *ptype = PETSC_DOUBLE; else if (htype == adios_long) *ptype = PETSC_LONG; else if (htype == adios_short) *ptype = PETSC_SHORT; else if (htype == adios_real) *ptype = PETSC_FLOAT; else if (htype == adios_string_array) *ptype = PETSC_CHAR; else if (htype == adios_string) *ptype = PETSC_STRING; else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported ADIOS datatype"); PetscFunctionReturn(0); }