#include /*I "petscviewer.h" I*/ #if defined(PETSC_HDF5_HAVE_PARALLEL) #include #else #include #endif static PetscErrorCode PetscViewerSetFromOptions_CGNS(PetscViewer v, PetscOptionItems *PetscOptionsObject) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)v->data; PetscFunctionBegin; PetscOptionsHeadBegin(PetscOptionsObject, "CGNS Viewer Options"); PetscCall(PetscOptionsInt("-viewer_cgns_batch_size", "Max number of steps to store in single file when using a template cgns:name-\%d.cgns", "", cgv->batch_size, &cgv->batch_size, NULL)); PetscOptionsHeadEnd(); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerView_CGNS(PetscViewer v, PetscViewer viewer) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)v->data; PetscFunctionBegin; if (cgv->filename) PetscCall(PetscViewerASCIIPrintf(viewer, "Filename: %s\n", cgv->filename)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileClose_CGNS(PetscViewer viewer) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data; PetscFunctionBegin; if (cgv->output_times) { size_t size, width = 32, *steps; char *solnames; PetscReal *times; cgsize_t num_times; PetscCall(PetscSegBufferGetSize(cgv->output_times, &size)); PetscCall(PetscSegBufferExtractInPlace(cgv->output_times, ×)); num_times = size; PetscCallCGNS(cg_biter_write(cgv->file_num, cgv->base, "TimeIterValues", num_times)); PetscCallCGNS(cg_goto(cgv->file_num, cgv->base, "BaseIterativeData_t", 1, NULL)); PetscCallCGNS(cg_array_write("TimeValues", CGNS_ENUMV(RealDouble), 1, &num_times, times)); PetscCall(PetscSegBufferDestroy(&cgv->output_times)); PetscCallCGNS(cg_ziter_write(cgv->file_num, cgv->base, cgv->zone, "ZoneIterativeData")); PetscCallCGNS(cg_goto(cgv->file_num, cgv->base, "Zone_t", cgv->zone, "ZoneIterativeData_t", 1, NULL)); PetscCall(PetscMalloc(size * width + 1, &solnames)); PetscCall(PetscSegBufferExtractInPlace(cgv->output_steps, &steps)); for (size_t i = 0; i < size; i++) PetscCall(PetscSNPrintf(&solnames[i * width], width + 1, "FlowSolution%-20zu", steps[i])); PetscCall(PetscSegBufferDestroy(&cgv->output_steps)); cgsize_t shape[2] = {(cgsize_t)width, (cgsize_t)size}; PetscCallCGNS(cg_array_write("FlowSolutionPointers", CGNS_ENUMV(Character), 2, shape, solnames)); // The VTK reader looks for names like FlowSolution*Pointers. for (size_t i = 0; i < size; i++) PetscCall(PetscSNPrintf(&solnames[i * width], width + 1, "%-32s", "CellInfo")); PetscCallCGNS(cg_array_write("FlowSolutionCellInfoPointers", CGNS_ENUMV(Character), 2, shape, solnames)); PetscCall(PetscFree(solnames)); PetscCallCGNS(cg_simulation_type_write(cgv->file_num, cgv->base, CGNS_ENUMV(TimeAccurate))); } PetscCall(PetscFree(cgv->filename)); #if defined(PETSC_HDF5_HAVE_PARALLEL) if (cgv->file_num) PetscCallCGNS(cgp_close(cgv->file_num)); #else if (cgv->file_num) PetscCallCGNS(cg_close(cgv->file_num)); #endif cgv->file_num = 0; PetscCall(PetscFree(cgv->node_l2g)); PetscCall(PetscFree(cgv->nodal_field)); PetscFunctionReturn(PETSC_SUCCESS); } PetscErrorCode PetscViewerCGNSFileOpen_Internal(PetscViewer viewer, PetscInt sequence_number) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data; PetscFunctionBegin; PetscCheck((cgv->filename == NULL) ^ (sequence_number < 0), PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Expect either a template filename or non-negative sequence number"); if (!cgv->filename) { char filename_numbered[PETSC_MAX_PATH_LEN]; // Cast sequence_number so %d can be used also when PetscInt is 64-bit. We could upgrade the format string if users // run more than 2B time steps. PetscCall(PetscSNPrintf(filename_numbered, sizeof filename_numbered, cgv->filename_template, (int)sequence_number)); PetscCall(PetscStrallocpy(filename_numbered, &cgv->filename)); } switch (cgv->btype) { case FILE_MODE_READ: SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "FILE_MODE_READ not yet implemented"); break; case FILE_MODE_WRITE: #if defined(PETSC_HDF5_HAVE_PARALLEL) PetscCallCGNS(cgp_mpi_comm(PetscObjectComm((PetscObject)viewer))); PetscCallCGNS(cgp_open(cgv->filename, CG_MODE_WRITE, &cgv->file_num)); #else PetscCallCGNS(cg_open(filename, CG_MODE_WRITE, &cgv->file_num)); #endif break; case FILE_MODE_UNDEFINED: SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_ORDER, "Must call PetscViewerFileSetMode() before PetscViewerFileSetName()"); default: SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Unsupported file mode %s", PetscFileModes[cgv->btype]); } PetscFunctionReturn(PETSC_SUCCESS); } PetscErrorCode PetscViewerCGNSCheckBatch_Internal(PetscViewer viewer) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data; size_t num_steps; PetscFunctionBegin; if (!cgv->filename_template) PetscFunctionReturn(PETSC_SUCCESS); // Batches are closed when viewer is destroyed PetscCall(PetscSegBufferGetSize(cgv->output_times, &num_steps)); if (num_steps >= cgv->batch_size) PetscCall(PetscViewerFileClose_CGNS(viewer)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerDestroy_CGNS(PetscViewer viewer) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data; PetscFunctionBegin; PetscCall(PetscViewerFileClose_CGNS(viewer)); PetscCall(PetscFree(cgv)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileSetName_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileGetName_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileSetMode_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileGetMode_C", NULL)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileSetMode_CGNS(PetscViewer viewer, PetscFileMode type) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data; PetscFunctionBegin; cgv->btype = type; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileGetMode_CGNS(PetscViewer viewer, PetscFileMode *type) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data; PetscFunctionBegin; *type = cgv->btype; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileSetName_CGNS(PetscViewer viewer, const char *filename) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data; char *has_pattern; PetscFunctionBegin; if (cgv->file_num) PetscCallCGNS(cg_close(cgv->file_num)); PetscCall(PetscFree(cgv->filename)); PetscCall(PetscFree(cgv->filename_template)); PetscCall(PetscStrchr(filename, '%', &has_pattern)); if (has_pattern) { PetscCall(PetscStrallocpy(filename, &cgv->filename_template)); // Templated file names open lazily, once we know DMGetOutputSequenceNumber() } else { PetscCall(PetscStrallocpy(filename, &cgv->filename)); PetscCall(PetscViewerCGNSFileOpen_Internal(viewer, -1)); } PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileGetName_CGNS(PetscViewer viewer, const char **filename) { PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data; PetscFunctionBegin; *filename = cgv->filename; PetscFunctionReturn(PETSC_SUCCESS); } /*MC PETSCVIEWERCGNS - A viewer for CGNS files Level: beginner Options Database Key: . -viewer_cgns_batch_size SIZE - set max number of output sequence times to write per batch Note: If the filename contains an integer format character, the CGNS viewer will created a batched output sequence. For example, one could use `-ts_monitor_solution cgns:flow-%d.cgns`. This is desirable if one wants to limit file sizes or if the job might crash/be killed by a resource manager before exiting cleanly. .seealso: [](sec_viewers), `PetscViewer`, `PetscViewerCreate()`, `VecView()`, `DMView()`, `PetscViewerFileSetName()`, `PetscViewerFileSetMode()`, `TSSetFromOptions()` M*/ PETSC_EXTERN PetscErrorCode PetscViewerCreate_CGNS(PetscViewer v) { PetscViewer_CGNS *cgv; PetscFunctionBegin; PetscCall(PetscNew(&cgv)); v->data = cgv; v->ops->destroy = PetscViewerDestroy_CGNS; v->ops->setfromoptions = PetscViewerSetFromOptions_CGNS; v->ops->view = PetscViewerView_CGNS; cgv->btype = FILE_MODE_UNDEFINED; cgv->filename = NULL; cgv->batch_size = 20; PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetName_C", PetscViewerFileSetName_CGNS)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetName_C", PetscViewerFileGetName_CGNS)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetMode_C", PetscViewerFileSetMode_CGNS)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetMode_C", PetscViewerFileGetMode_CGNS)); PetscFunctionReturn(PETSC_SUCCESS); }