#include <../src/sys/classes/viewer/impls/vtk/vtkvimpl.h> /*I "petscviewer.h" I*/ /*MC PetscViewerVTKWriteFunction - functional form used to provide a writer to the `PETSCVIEWERVTK` Synopsis: #include PetscViewerVTKWriteFunction(PetscObject object,PetscViewer viewer) Input Parameters: + object - the PETSc object to be written - viewer - viewer it is to be written to Level: developer .seealso: [](sec_viewers), `PETSCVIEWERVTK`, `PetscViewerVTKAddField()` M*/ /*@C PetscViewerVTKAddField - Add a field to the viewer Collective Input Parameters: + viewer - `PETSCVIEWERVTK` . dm - `DM` on which `Vec` lives . PetscViewerVTKWriteFunction - function to write this `Vec` . fieldnum - which field of the `DM` to write (`PETSC_DEFAULT` if the whole vector should be written) . fieldtype - Either `PETSC_VTK_POINT_FIELD` or `PETSC_VTK_CELL_FIELD` . checkdm - whether to check for identical dm arguments as fields are added - vec - `Vec` from which to write Level: developer Note: This routine keeps exclusive ownership of the `Vec`. The caller should not use or destroy the `Vec` after calling it. .seealso: [](sec_viewers), `PETSCVIEWERVTK`, `PetscViewerVTKOpen()`, `DMDAVTKWriteAll()`, `PetscViewerVTKWriteFunction`, `PetscViewerVTKGetDM()` @*/ PetscErrorCode PetscViewerVTKAddField(PetscViewer viewer, PetscObject dm, PetscErrorCode (*PetscViewerVTKWriteFunction)(PetscObject, PetscViewer), PetscInt fieldnum, PetscViewerVTKFieldType fieldtype, PetscBool checkdm, PetscObject vec) { PetscFunctionBegin; PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); PetscValidHeader(dm, 2); PetscValidHeader(vec, 7); PetscUseMethod(viewer, "PetscViewerVTKAddField_C", (PetscViewer, PetscObject, PetscErrorCode (*)(PetscObject, PetscViewer), PetscInt, PetscViewerVTKFieldType, PetscBool, PetscObject), (viewer, dm, PetscViewerVTKWriteFunction, fieldnum, fieldtype, checkdm, vec)); PetscFunctionReturn(PETSC_SUCCESS); } /*@ PetscViewerVTKGetDM - get the `DM` associated with the `PETSCVIEWERVTK` viewer Collective Input Parameters: + viewer - `PETSCVIEWERVTK` viewer - dm - `DM` associated with the viewer (as a `PetscObject`) Level: developer .seealso: [](sec_viewers), `PETSCVIEWERVTK`, `PetscViewerVTKOpen()`, `DMDAVTKWriteAll()`, `PetscViewerVTKWriteFunction`, `PetscViewerVTKAddField()` @*/ PetscErrorCode PetscViewerVTKGetDM(PetscViewer viewer, PetscObject *dm) { PetscFunctionBegin; PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); PetscUseMethod(viewer, "PetscViewerVTKGetDM_C", (PetscViewer, PetscObject *), (viewer, dm)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerDestroy_VTK(PetscViewer viewer) { PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; PetscFunctionBegin; PetscCall(PetscFree(vtk->filename)); PetscCall(PetscFree(vtk)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileSetName_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileGetName_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileSetMode_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerFileGetMode_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerVTKAddField_C", NULL)); PetscCall(PetscObjectComposeFunction((PetscObject)viewer, "PetscViewerVTKGetDM_C", NULL)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFlush_VTK(PetscViewer viewer) { PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; PetscViewerVTKObjectLink link, next; PetscFunctionBegin; PetscCheck(!vtk->link || !(!vtk->dm || !vtk->write), PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_WRONGSTATE, "No fields or no grid"); if (vtk->write) PetscCall((*vtk->write)(vtk->dm, viewer)); for (link = vtk->link; link; link = next) { next = link->next; PetscCall(PetscObjectDestroy(&link->vec)); PetscCall(PetscFree(link)); } PetscCall(PetscObjectDestroy(&vtk->dm)); vtk->write = NULL; vtk->link = NULL; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileSetName_VTK(PetscViewer viewer, const char name[]) { PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; PetscBool isvtk, isvts, isvtu, isvtr; size_t len; PetscFunctionBegin; PetscCall(PetscViewerFlush(viewer)); PetscCall(PetscFree(vtk->filename)); PetscCall(PetscStrlen(name, &len)); if (!len) { isvtk = PETSC_TRUE; } else { PetscCall(PetscStrcasecmp(name + len - 4, ".vtk", &isvtk)); PetscCall(PetscStrcasecmp(name + len - 4, ".vts", &isvts)); PetscCall(PetscStrcasecmp(name + len - 4, ".vtu", &isvtu)); PetscCall(PetscStrcasecmp(name + len - 4, ".vtr", &isvtr)); } if (isvtk) { PetscCheck(viewer->format == PETSC_VIEWER_DEFAULT, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Cannot use file '%s' with format %s, should have '.vtk' extension", name, PetscViewerFormats[viewer->format]); } else if (isvts) { if (viewer->format == PETSC_VIEWER_DEFAULT) viewer->format = PETSC_VIEWER_VTK_VTS; PetscCheck(viewer->format == PETSC_VIEWER_VTK_VTS, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Cannot use file '%s' with format %s, should have '.vts' extension", name, PetscViewerFormats[viewer->format]); } else if (isvtu) { if (viewer->format == PETSC_VIEWER_DEFAULT) viewer->format = PETSC_VIEWER_VTK_VTU; PetscCheck(viewer->format == PETSC_VIEWER_VTK_VTU, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Cannot use file '%s' with format %s, should have '.vtu' extension", name, PetscViewerFormats[viewer->format]); } else if (isvtr) { if (viewer->format == PETSC_VIEWER_DEFAULT) viewer->format = PETSC_VIEWER_VTK_VTR; PetscCheck(viewer->format == PETSC_VIEWER_VTK_VTR, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Cannot use file '%s' with format %s, should have '.vtr' extension", name, PetscViewerFormats[viewer->format]); } else SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_UNKNOWN_TYPE, "File '%s' has unrecognized extension", name); PetscCall(PetscStrallocpy(len ? name : "stdout", &vtk->filename)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileGetName_VTK(PetscViewer viewer, const char **name) { PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; PetscFunctionBegin; *name = vtk->filename; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileSetMode_VTK(PetscViewer viewer, PetscFileMode type) { PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; PetscFunctionBegin; vtk->btype = type; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerFileGetMode_VTK(PetscViewer viewer, PetscFileMode *type) { PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; PetscFunctionBegin; *type = vtk->btype; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerVTKAddField_VTK(PetscViewer viewer, PetscObject dm, PetscErrorCode (*PetscViewerVTKWriteFunction)(PetscObject, PetscViewer), PetscInt fieldnum, PetscViewerVTKFieldType fieldtype, PetscBool checkdm, PetscObject vec) { PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; PetscViewerVTKObjectLink link, tail = vtk->link; PetscFunctionBegin; if (vtk->dm) { PetscCheck(!checkdm || dm == vtk->dm, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Refusing to write a field from more than one grid to the same VTK file. Set checkdm = PETSC_FALSE to skip this check."); } else { PetscCall(PetscObjectReference(dm)); vtk->dm = dm; } vtk->write = PetscViewerVTKWriteFunction; PetscCall(PetscNew(&link)); link->ft = fieldtype; link->vec = vec; link->field = fieldnum; link->next = NULL; /* Append to list */ if (tail) { while (tail->next) tail = tail->next; tail->next = link; } else vtk->link = link; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscViewerVTKGetDM_VTK(PetscViewer viewer, PetscObject *dm) { PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; PetscFunctionBegin; *dm = vtk->dm; PetscFunctionReturn(PETSC_SUCCESS); } /*MC PETSCVIEWERVTK - A viewer that writes to a VTK file Level: beginner .seealso: [](sec_viewers), `PetscViewerVTKOpen()`, `PetscViewerHDF5Open()`, `PetscViewerStringSPrintf()`, `PetscViewerSocketOpen()`, `PetscViewerDrawOpen()`, `PETSCVIEWERSOCKET`, `PetscViewerCreate()`, `PetscViewerASCIIOpen()`, `PetscViewerBinaryOpen()`, `PETSCVIEWERBINARY`, `PETSCVIEWERDRAW`, `PETSCVIEWERSTRING`, `PetscViewerMatlabOpen()`, `VecView()`, `DMView()`, `PetscViewerMatlabPutArray()`, `PETSCVIEWERASCII`, `PETSCVIEWERMATLAB`, `PetscViewerFileSetName()`, `PetscViewerFileSetMode()`, `PetscViewerFormat`, `PetscViewerType`, `PetscViewerSetType()` M*/ PETSC_EXTERN PetscErrorCode PetscViewerCreate_VTK(PetscViewer v) { PetscViewer_VTK *vtk; PetscFunctionBegin; PetscCall(PetscNew(&vtk)); v->data = (void *)vtk; v->ops->destroy = PetscViewerDestroy_VTK; v->ops->flush = PetscViewerFlush_VTK; vtk->btype = FILE_MODE_UNDEFINED; vtk->filename = NULL; PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetName_C", PetscViewerFileSetName_VTK)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetName_C", PetscViewerFileGetName_VTK)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetMode_C", PetscViewerFileSetMode_VTK)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetMode_C", PetscViewerFileGetMode_VTK)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerVTKAddField_C", PetscViewerVTKAddField_VTK)); PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerVTKGetDM_C", PetscViewerVTKGetDM_VTK)); PetscFunctionReturn(PETSC_SUCCESS); } /*@ PetscViewerVTKOpen - Opens a `PETSCVIEWERVTK` viewer file. Collective Input Parameters: + comm - MPI communicator . name - name of file - type - type of file .vb FILE_MODE_WRITE - create new file for binary output FILE_MODE_READ - open existing file for binary input (not currently supported) FILE_MODE_APPEND - open existing file for binary output (not currently supported) .ve Output Parameter: . vtk - `PetscViewer` for VTK input/output to use with the specified file Level: beginner .seealso: [](sec_viewers), `PETSCVIEWERVTK`, `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscFileMode`, `PetscViewer` @*/ PetscErrorCode PetscViewerVTKOpen(MPI_Comm comm, const char name[], PetscFileMode type, PetscViewer *vtk) { PetscFunctionBegin; PetscCall(PetscViewerCreate(comm, vtk)); PetscCall(PetscViewerSetType(*vtk, PETSCVIEWERVTK)); PetscCall(PetscViewerFileSetMode(*vtk, type)); PetscCall(PetscViewerFileSetName(*vtk, name)); PetscFunctionReturn(PETSC_SUCCESS); } /*@C PetscViewerVTKFWrite - write binary data preceded by 32-bit int length (in bytes), does not do byte swapping. Logically Collective Input Parameters: + viewer - logically collective viewer, data written from rank 0 . fp - file pointer valid on rank 0 . data - data pointer valid on rank 0 . n - number of data items - dtype - data type Level: developer Note: If `PetscScalar` is `__float128` then the binary files are written in double precision .seealso: [](sec_viewers), `PETSCVIEWERVTK`, `DMDAVTKWriteAll()`, `DMPlexVTKWriteAll()`, `PetscViewerPushFormat()`, `PetscViewerVTKOpen()`, `PetscBinaryWrite()` @*/ PetscErrorCode PetscViewerVTKFWrite(PetscViewer viewer, FILE *fp, const void *data, PetscCount n, MPI_Datatype dtype) { PetscMPIInt rank; MPI_Datatype vdtype = dtype; #if defined(PETSC_USE_REAL___FLOAT128) double *tmp; #endif PetscFunctionBegin; PetscCheck(n >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_OUTOFRANGE, "Trying to write a negative amount of data %" PetscCount_FMT, n); if (!n) PetscFunctionReturn(PETSC_SUCCESS); PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); if (rank == 0) { size_t count; PetscMPIInt dsize; PetscInt64 bytes; #if defined(PETSC_USE_REAL___FLOAT128) if (dtype == MPIU___FLOAT128) { PetscReal *ttmp = (PetscReal *)data; PetscCall(PetscMalloc1(n, &tmp)); for (PetscCount i = 0; i < n; i++) tmp[i] = ttmp[i]; data = (void *)tmp; vdtype = MPI_DOUBLE; } #endif PetscCallMPI(MPI_Type_size(vdtype, &dsize)); bytes = (PetscInt64)dsize * n; count = fwrite(&bytes, sizeof(bytes), 1, fp); PetscCheck(count == 1, PETSC_COMM_SELF, PETSC_ERR_FILE_WRITE, "Error writing byte count"); count = fwrite(data, dsize, (size_t)n, fp); PetscCheck((PetscCount)count == n, PETSC_COMM_SELF, PETSC_ERR_FILE_WRITE, "Wrote %" PetscCount_FMT "/%" PetscCount_FMT " array members of size %d", (PetscCount)count, n, dsize); #if defined(PETSC_USE_REAL___FLOAT128) if (dtype == MPIU___FLOAT128) PetscCall(PetscFree(tmp)); #endif } PetscFunctionReturn(PETSC_SUCCESS); }