#include /*I "petscsys.h" I*/ PETSC_SINGLE_LIBRARY_INTERN PetscErrorCode PetscGatherNumberOfMessages_Private(MPI_Comm, const PetscMPIInt[], const PetscInt[], PetscMPIInt *); PETSC_SINGLE_LIBRARY_INTERN PetscErrorCode PetscGatherMessageLengths_Private(MPI_Comm, PetscMPIInt, PetscMPIInt, const PetscInt[], PetscMPIInt **, PetscInt **); /*@C PetscGatherNumberOfMessages - Computes the number of messages an MPI rank expects to receive during a neighbor communication Collective, No Fortran Support Input Parameters: + comm - Communicator . iflags - an array of integers of length sizeof(comm). A '1' in `ilengths`[i] represent a message from current node to ith node. Optionally `NULL` - ilengths - Non zero ilengths[i] represent a message to i of length `ilengths`[i]. Optionally `NULL`. Output Parameter: . nrecvs - number of messages received Level: developer Notes: With this info, the correct message lengths can be determined using `PetscGatherMessageLengths()` Either `iflags` or `ilengths` should be provided. If `iflags` is not provided (`NULL`) it can be computed from `ilengths`. If `iflags` is provided, `ilengths` is not required. .seealso: `PetscGatherMessageLengths()`, `PetscGatherMessageLengths2()`, `PetscCommBuildTwoSided()` @*/ PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm comm, const PetscMPIInt iflags[], const PetscMPIInt ilengths[], PetscMPIInt *nrecvs) { PetscMPIInt size, rank, *recv_buf, i, *iflags_local = NULL, *iflags_localm; PetscFunctionBegin; PetscCallMPI(MPI_Comm_size(comm, &size)); PetscCallMPI(MPI_Comm_rank(comm, &rank)); PetscCall(PetscMalloc2(size, &recv_buf, size, &iflags_localm)); /* If iflags not provided, compute iflags from ilengths */ if (!iflags) { PetscCheck(ilengths, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Either iflags or ilengths should be provided"); iflags_local = iflags_localm; for (i = 0; i < size; i++) { if (ilengths[i]) iflags_local[i] = 1; else iflags_local[i] = 0; } } else iflags_local = (PetscMPIInt *)iflags; /* Post an allreduce to determine the number of messages the current MPI rank will receive */ PetscCallMPI(MPIU_Allreduce(iflags_local, recv_buf, size, MPI_INT, MPI_SUM, comm)); *nrecvs = recv_buf[rank]; PetscCall(PetscFree2(recv_buf, iflags_localm)); PetscFunctionReturn(PETSC_SUCCESS); } /*@C PetscGatherMessageLengths - Computes information about messages that an MPI rank will receive, including (from-id,length) pairs for each message. Collective, No Fortran Support Input Parameters: + comm - Communicator . nsends - number of messages that are to be sent. . nrecvs - number of messages being received - ilengths - an array of integers of length sizeof(comm) a non zero `ilengths`[i] represent a message to i of length `ilengths`[i] Output Parameters: + onodes - list of ranks from which messages are expected - olengths - corresponding message lengths Level: developer Notes: With this info, the correct `MPIU_Irecv()` can be posted with the correct from-id, with a buffer with the right amount of memory required. The calling function deallocates the memory in onodes and olengths To determine `nrecvs`, one can use `PetscGatherNumberOfMessages()` .seealso: `PetscGatherNumberOfMessages()`, `PetscGatherMessageLengths2()`, `PetscCommBuildTwoSided()` @*/ PetscErrorCode PetscGatherMessageLengths(MPI_Comm comm, PetscMPIInt nsends, PetscMPIInt nrecvs, const PetscMPIInt ilengths[], PetscMPIInt **onodes, PetscMPIInt **olengths) { PetscMPIInt size, rank, tag, i, j; MPI_Request *s_waits, *r_waits; MPI_Status *w_status; PetscFunctionBegin; PetscCallMPI(MPI_Comm_size(comm, &size)); PetscCallMPI(MPI_Comm_rank(comm, &rank)); PetscCall(PetscCommGetNewTag(comm, &tag)); /* cannot use PetscMalloc3() here because in the call to MPI_Waitall() they MUST be contiguous */ PetscCall(PetscMalloc2(nrecvs + nsends, &r_waits, nrecvs + nsends, &w_status)); s_waits = PetscSafePointerPlusOffset(r_waits, nrecvs); /* Post the Irecv to get the message length-info */ PetscCall(PetscMalloc1(nrecvs, olengths)); for (i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv((*olengths) + i, 1, MPI_INT, MPI_ANY_SOURCE, tag, comm, r_waits + i)); /* Post the Isends with the message length-info */ for (i = 0, j = 0; i < size; ++i) { if (ilengths[i]) { PetscCallMPI(MPIU_Isend((void *)(ilengths + i), 1, MPI_INT, i, tag, comm, s_waits + j)); j++; } } /* Post waits on sends and receives */ if (nrecvs + nsends) PetscCallMPI(MPI_Waitall(nrecvs + nsends, r_waits, w_status)); /* Pack up the received data */ PetscCall(PetscMalloc1(nrecvs, onodes)); for (i = 0; i < nrecvs; ++i) { (*onodes)[i] = w_status[i].MPI_SOURCE; #if defined(PETSC_HAVE_OPENMPI) /* This line is a workaround for a bug in Open MPI 2.1.1 distributed by Ubuntu-18.04.2 LTS. It happens in self-to-self MPI_Send/Recv using MPI_ANY_SOURCE for message matching. Open MPI does not put correct value in recv buffer. See also https://lists.mcs.anl.gov/pipermail/petsc-dev/2019-July/024803.html https://www.mail-archive.com/users@lists.open-mpi.org//msg33383.html */ if (w_status[i].MPI_SOURCE == rank) (*olengths)[i] = ilengths[rank]; #endif } PetscCall(PetscFree2(r_waits, w_status)); PetscFunctionReturn(PETSC_SUCCESS); } /* Same as PetscGatherNumberOfMessages(), except using PetscInt for ilengths[] */ PetscErrorCode PetscGatherNumberOfMessages_Private(MPI_Comm comm, const PetscMPIInt iflags[], const PetscInt ilengths[], PetscMPIInt *nrecvs) { PetscMPIInt size, rank, *recv_buf, i, *iflags_local = NULL, *iflags_localm; PetscFunctionBegin; PetscCallMPI(MPI_Comm_size(comm, &size)); PetscCallMPI(MPI_Comm_rank(comm, &rank)); PetscCall(PetscMalloc2(size, &recv_buf, size, &iflags_localm)); /* If iflags not provided, compute iflags from ilengths */ if (!iflags) { PetscCheck(ilengths, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Either iflags or ilengths should be provided"); iflags_local = iflags_localm; for (i = 0; i < size; i++) { if (ilengths[i]) iflags_local[i] = 1; else iflags_local[i] = 0; } } else iflags_local = (PetscMPIInt *)iflags; /* Post an allreduce to determine the number of messages the current MPI rank will receive */ PetscCallMPI(MPIU_Allreduce(iflags_local, recv_buf, size, MPI_INT, MPI_SUM, comm)); *nrecvs = recv_buf[rank]; PetscCall(PetscFree2(recv_buf, iflags_localm)); PetscFunctionReturn(PETSC_SUCCESS); } /* Same as PetscGatherMessageLengths(), except using PetscInt for message lengths */ PetscErrorCode PetscGatherMessageLengths_Private(MPI_Comm comm, PetscMPIInt nsends, PetscMPIInt nrecvs, const PetscInt ilengths[], PetscMPIInt **onodes, PetscInt **olengths) { PetscMPIInt size, rank, tag, i, j; MPI_Request *s_waits, *r_waits; MPI_Status *w_status; PetscFunctionBegin; PetscCallMPI(MPI_Comm_size(comm, &size)); PetscCallMPI(MPI_Comm_rank(comm, &rank)); PetscCall(PetscCommGetNewTag(comm, &tag)); /* cannot use PetscMalloc3() here because in the call to MPI_Waitall() they MUST be contiguous */ PetscCall(PetscMalloc2(nrecvs + nsends, &r_waits, nrecvs + nsends, &w_status)); s_waits = PetscSafePointerPlusOffset(r_waits, nrecvs); /* Post the Irecv to get the message length-info */ PetscCall(PetscMalloc1(nrecvs, olengths)); for (i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv((*olengths) + i, 1, MPIU_INT, MPI_ANY_SOURCE, tag, comm, r_waits + i)); /* Post the Isends with the message length-info */ for (i = 0, j = 0; i < size; ++i) { if (ilengths[i]) { PetscCallMPI(MPIU_Isend((void *)(ilengths + i), 1, MPIU_INT, i, tag, comm, s_waits + j)); j++; } } /* Post waits on sends and receives */ if (nrecvs + nsends) PetscCallMPI(MPI_Waitall(nrecvs + nsends, r_waits, w_status)); /* Pack up the received data */ PetscCall(PetscMalloc1(nrecvs, onodes)); for (i = 0; i < nrecvs; ++i) { (*onodes)[i] = w_status[i].MPI_SOURCE; if (w_status[i].MPI_SOURCE == rank) (*olengths)[i] = ilengths[rank]; /* See comments in PetscGatherMessageLengths */ } PetscCall(PetscFree2(r_waits, w_status)); PetscFunctionReturn(PETSC_SUCCESS); } /*@C PetscGatherMessageLengths2 - Computes info about messages that a MPI rank will receive, including (from-id,length) pairs for each message. Same functionality as `PetscGatherMessageLengths()` except it takes TWO ilenths and output TWO olengths. Collective, No Fortran Support Input Parameters: + comm - Communicator . nsends - number of messages that are to be sent. . nrecvs - number of messages being received . ilengths1 - first array of integers of length sizeof(comm) - ilengths2 - second array of integers of length sizeof(comm) Output Parameters: + onodes - list of ranks from which messages are expected . olengths1 - first corresponding message lengths - olengths2 - second message lengths Level: developer Notes: With this info, the correct `MPIU_Irecv()` can be posted with the correct from-id, with a buffer with the right amount of memory required. The calling function should `PetscFree()` the memory in `onodes` and `olengths` To determine `nrecvs`, one can use `PetscGatherNumberOfMessages()` .seealso: `PetscGatherMessageLengths()`, `PetscGatherNumberOfMessages()`, `PetscCommBuildTwoSided()` @*/ PetscErrorCode PetscGatherMessageLengths2(MPI_Comm comm, PetscMPIInt nsends, PetscMPIInt nrecvs, const PetscMPIInt ilengths1[], const PetscMPIInt ilengths2[], PetscMPIInt **onodes, PetscMPIInt **olengths1, PetscMPIInt **olengths2) { PetscMPIInt size, tag, i, j, *buf_s, *buf_r, *buf_j = NULL; MPI_Request *s_waits, *r_waits; MPI_Status *w_status; PetscFunctionBegin; PetscCallMPI(MPI_Comm_size(comm, &size)); PetscCall(PetscCommGetNewTag(comm, &tag)); /* cannot use PetscMalloc5() because r_waits and s_waits must be contiguous for the call to MPI_Waitall() */ PetscCall(PetscMalloc4(nrecvs + nsends, &r_waits, 2 * nrecvs, &buf_r, 2 * nsends, &buf_s, nrecvs + nsends, &w_status)); s_waits = PetscSafePointerPlusOffset(r_waits, nrecvs); /* Post the Irecv to get the message length-info */ PetscCall(PetscMalloc1(nrecvs, olengths1)); PetscCall(PetscMalloc1(nrecvs, olengths2)); for (i = 0; i < nrecvs; i++) { buf_j = buf_r + (2 * i); PetscCallMPI(MPIU_Irecv(buf_j, 2, MPI_INT, MPI_ANY_SOURCE, tag, comm, r_waits + i)); } /* Post the Isends with the message length-info */ for (i = 0, j = 0; i < size; ++i) { if (ilengths1[i]) { buf_j = buf_s + (2 * j); buf_j[0] = *(ilengths1 + i); buf_j[1] = *(ilengths2 + i); PetscCallMPI(MPIU_Isend(buf_j, 2, MPI_INT, i, tag, comm, s_waits + j)); j++; } } PetscCheck(j == nsends, PETSC_COMM_SELF, PETSC_ERR_PLIB, "j %d not equal to expected number of sends %d", j, nsends); /* Post waits on sends and receives */ if (nrecvs + nsends) PetscCallMPI(MPI_Waitall(nrecvs + nsends, r_waits, w_status)); /* Pack up the received data */ PetscCall(PetscMalloc1(nrecvs, onodes)); for (i = 0; i < nrecvs; ++i) { (*onodes)[i] = w_status[i].MPI_SOURCE; buf_j = buf_r + (2 * i); (*olengths1)[i] = buf_j[0]; (*olengths2)[i] = buf_j[1]; } PetscCall(PetscFree4(r_waits, buf_r, buf_s, w_status)); PetscFunctionReturn(PETSC_SUCCESS); } /* Allocate a buffer sufficient to hold messages of size specified in olengths. And post Irecvs on these buffers using node info from onodes */ PetscErrorCode PetscPostIrecvInt(MPI_Comm comm, PetscMPIInt tag, PetscMPIInt nrecvs, const PetscMPIInt onodes[], const PetscMPIInt olengths[], PetscInt ***rbuf, MPI_Request **r_waits) { PetscInt **rbuf_t, i, len = 0; MPI_Request *r_waits_t; PetscFunctionBegin; /* compute memory required for recv buffers */ for (i = 0; i < nrecvs; i++) len += olengths[i]; /* each message length */ /* allocate memory for recv buffers */ PetscCall(PetscMalloc1(nrecvs + 1, &rbuf_t)); PetscCall(PetscMalloc1(len, &rbuf_t[0])); for (i = 1; i < nrecvs; ++i) rbuf_t[i] = rbuf_t[i - 1] + olengths[i - 1]; /* Post the receives */ PetscCall(PetscMalloc1(nrecvs, &r_waits_t)); for (i = 0; i < nrecvs; ++i) PetscCallMPI(MPIU_Irecv(rbuf_t[i], olengths[i], MPIU_INT, onodes[i], tag, comm, r_waits_t + i)); *rbuf = rbuf_t; *r_waits = r_waits_t; PetscFunctionReturn(PETSC_SUCCESS); } PetscErrorCode PetscPostIrecvScalar(MPI_Comm comm, PetscMPIInt tag, PetscMPIInt nrecvs, const PetscMPIInt onodes[], const PetscMPIInt olengths[], PetscScalar ***rbuf, MPI_Request **r_waits) { PetscMPIInt i; PetscScalar **rbuf_t; MPI_Request *r_waits_t; PetscInt len = 0; PetscFunctionBegin; /* compute memory required for recv buffers */ for (i = 0; i < nrecvs; i++) len += olengths[i]; /* each message length */ /* allocate memory for recv buffers */ PetscCall(PetscMalloc1(nrecvs + 1, &rbuf_t)); PetscCall(PetscMalloc1(len, &rbuf_t[0])); for (i = 1; i < nrecvs; ++i) rbuf_t[i] = rbuf_t[i - 1] + olengths[i - 1]; /* Post the receives */ PetscCall(PetscMalloc1(nrecvs, &r_waits_t)); for (i = 0; i < nrecvs; ++i) PetscCallMPI(MPIU_Irecv(rbuf_t[i], olengths[i], MPIU_SCALAR, onodes[i], tag, comm, r_waits_t + i)); *rbuf = rbuf_t; *r_waits = r_waits_t; PetscFunctionReturn(PETSC_SUCCESS); }