#include #pragma clang diagnostic ignored "-Wdeprecated-declarations" #pragma gcc diagnostic ignored "-Wdeprecated-declarations" /* Encodes and decodes from MIME Base64 */ static char encoding_table[] = {'A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', 'J', 'K', 'L', 'M', 'N', 'O', 'P', 'Q', 'R', 'S', 'T', 'U', 'V', 'W', 'X', 'Y', 'Z', 'a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j', 'k', 'l', 'm', 'n', 'o', 'p', 'q', 'r', 's', 't', 'u', 'v', 'w', 'x', 'y', 'z', '0', '1', '2', '3', '4', '5', '6', '7', '8', '9', '+', '/'}; static PetscErrorCode base64_encode(const unsigned char *data,unsigned char *encoded_data,size_t len) { static size_t mod_table[] = {0, 2, 1}; size_t i,j; size_t input_length,output_length; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscStrlen((const char*)data,&input_length);CHKERRQ(ierr); output_length = 4 * ((input_length + 2) / 3); if (output_length > len) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Output length not large enough"); for (i = 0, j = 0; i < input_length;) { uint32_t octet_a = i < input_length ? (unsigned char)data[i++] : 0; uint32_t octet_b = i < input_length ? (unsigned char)data[i++] : 0; uint32_t octet_c = i < input_length ? (unsigned char)data[i++] : 0; uint32_t triple = (octet_a << 0x10) + (octet_b << 0x08) + octet_c; encoded_data[j++] = encoding_table[(triple >> 3 * 6) & 0x3F]; encoded_data[j++] = encoding_table[(triple >> 2 * 6) & 0x3F]; encoded_data[j++] = encoding_table[(triple >> 1 * 6) & 0x3F]; encoded_data[j++] = encoding_table[(triple >> 0 * 6) & 0x3F]; } encoded_data[j] = 0; for (i = 0; i < mod_table[input_length % 3]; i++) encoded_data[output_length - 1 - i] = '='; PetscFunctionReturn(0); } PETSC_UNUSED static PetscErrorCode base64_decode(const unsigned char *data,unsigned char* decoded_data, size_t length) { static char decoding_table[257]; static int decode_table_built = 0; size_t i,j; PetscErrorCode ierr; size_t input_length,output_length; PetscFunctionBegin; if (!decode_table_built) { for (i = 0; i < 64; i++) decoding_table[(unsigned char) encoding_table[i]] = i; decode_table_built = 1; } ierr = PetscStrlen((const char*)data,&input_length);CHKERRQ(ierr); if (input_length % 4 != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Input length must be divisible by 4"); output_length = input_length / 4 * 3; if (data[input_length - 1] == '=') (output_length)--; if (data[input_length - 2] == '=') (output_length)--; if (output_length > length) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Output length too shore"); for (i = 0, j = 0; i < input_length;) { uint32_t sextet_a = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]]; uint32_t sextet_b = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]]; uint32_t sextet_c = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]]; uint32_t sextet_d = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]]; uint32_t triple = (sextet_a << 3 * 6) + (sextet_b << 2 * 6) + (sextet_c << 1 * 6) + (sextet_d << 0 * 6); if (j < output_length) decoded_data[j++] = (triple >> 2 * 8) & 0xFF; if (j < output_length) decoded_data[j++] = (triple >> 1 * 8) & 0xFF; if (j < output_length) decoded_data[j++] = (triple >> 0 * 8) & 0xFF; } decoded_data[j] = 0; PetscFunctionReturn(0); } #if defined(PETSC_HAVE_UNISTD_H) #include #endif /*@C PetscGlobusAuthorize - Get an access token allowing PETSc applications to make Globus file transfer requests Not collective, only the first process in MPI_Comm does anything Input Parameters: + comm - the MPI communicator - tokensize - size of the token array Output Parameters: . access_token - can be used with PetscGlobusUpLoad() for 30 days Notes: This call requires stdout and stdin access from process 0 on the MPI communicator You can run src/sys/webclient/tutorials/globusobtainaccesstoken to get an access token Level: intermediate .seealso: PetscGoogleDriveRefresh(), PetscGoogleDriveUpload(), PetscURLShorten(), PetscGlobusUpload() @*/ PetscErrorCode PetscGlobusAuthorize(MPI_Comm comm,char access_token[],size_t tokensize) { SSL_CTX *ctx; SSL *ssl; int sock; PetscErrorCode ierr; char buff[8*1024],*ptr,head[1024]; PetscMPIInt rank; size_t len; PetscBool found; PetscFunctionBegin; ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); if (rank == 0) { if (!isatty(fileno(PETSC_STDOUT))) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Requires users input/output"); ierr = PetscPrintf(comm,"Enter globus username:");CHKERRQ(ierr); ptr = fgets(buff, 1024, stdin); if (!ptr) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_FILE_READ, "Error reading from stdin: %d", errno); ierr = PetscStrlen(buff,&len);CHKERRQ(ierr); buff[len-1] = ':'; /* remove carriage return at end of line */ ierr = PetscPrintf(comm,"Enter globus password:");CHKERRQ(ierr); ptr = fgets(buff+len, 1024-len, stdin); if (!ptr) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_FILE_READ, "Error reading from stdin: %d", errno); ierr = PetscStrlen(buff,&len);CHKERRQ(ierr); buff[len-1] = '\0'; /* remove carriage return at end of line */ ierr = PetscStrcpy(head,"Authorization: Basic ");CHKERRQ(ierr); ierr = base64_encode((const unsigned char*)buff,(unsigned char*)(head+21),sizeof(head)-21);CHKERRQ(ierr); ierr = PetscStrcat(head,"\r\n");CHKERRQ(ierr); ierr = PetscSSLInitializeContext(&ctx);CHKERRQ(ierr); ierr = PetscHTTPSConnect("nexus.api.globusonline.org",443,ctx,&sock,&ssl);CHKERRQ(ierr); ierr = PetscHTTPSRequest("GET","nexus.api.globusonline.org/goauth/token?grant_type=client_credentials",head,"application/x-www-form-urlencoded",NULL,ssl,buff,sizeof(buff));CHKERRQ(ierr); ierr = PetscSSLDestroyContext(ctx);CHKERRQ(ierr); close(sock); ierr = PetscPullJSONValue(buff,"access_token",access_token,tokensize,&found);CHKERRQ(ierr); if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Globus did not return access token"); ierr = PetscPrintf(comm,"Here is your Globus access token, save it in a save place, in the future you can run PETSc\n");CHKERRQ(ierr); ierr = PetscPrintf(comm,"programs with the option -globus_access_token %s\n",access_token);CHKERRQ(ierr); ierr = PetscPrintf(comm,"to access Globus automatically\n");CHKERRQ(ierr); } PetscFunctionReturn(0); } /*@C PetscGlobusGetTransfers - Get a record of current transfers requested from Globus Not collective, only the first process in MPI_Comm does anything Input Parameters: + comm - the MPI communicator . access_token - Globus access token, if NULL will check in options database for -globus_access_token XXX otherwise will call PetscGlobusAuthorize(). - buffsize - size of the buffer Output Parameters: . buff - location to put Globus information Level: intermediate .seealso: PetscGoogleDriveRefresh(), PetscGoogleDriveUpload(), PetscURLShorten(), PetscGlobusUpload(), PetscGlobusAuthorize() @*/ PetscErrorCode PetscGlobusGetTransfers(MPI_Comm comm,const char access_token[],char buff[],size_t buffsize) { SSL_CTX *ctx; SSL *ssl; int sock; PetscErrorCode ierr; char head[4096]; PetscMPIInt rank; PetscFunctionBegin; ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); if (rank == 0) { ierr = PetscStrcpy(head,"Authorization : Globus-Goauthtoken ");CHKERRQ(ierr); if (access_token) { ierr = PetscStrcat(head,access_token);CHKERRQ(ierr); } else { PetscBool set; char accesstoken[4096]; ierr = PetscOptionsGetString(NULL,NULL,"-globus_access_token",accesstoken,sizeof(accesstoken),&set);CHKERRQ(ierr); if (!set) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Pass in Globus accesstoken or use -globus_access_token XXX"); ierr = PetscStrcat(head,accesstoken);CHKERRQ(ierr); } ierr = PetscStrcat(head,"\r\n");CHKERRQ(ierr); ierr = PetscSSLInitializeContext(&ctx);CHKERRQ(ierr); ierr = PetscHTTPSConnect("transfer.api.globusonline.org",443,ctx,&sock,&ssl);CHKERRQ(ierr); ierr = PetscHTTPSRequest("GET","transfer.api.globusonline.org/v0.10/tasksummary",head,"application/json",NULL,ssl,buff,buffsize);CHKERRQ(ierr); ierr = PetscSSLDestroyContext(ctx);CHKERRQ(ierr); close(sock); } PetscFunctionReturn(0); } /*@C PetscGlobusUpload - Loads a file to Globus Not collective, only the first process in the MPI_Comm uploads the file Input Parameters: + comm - MPI communicator . access_token - obtained with PetscGlobusAuthorize(), pass NULL to use -globus_access_token XXX from the PETSc database - filename - file to upload Options Database: . -globus_access_token XXX - the Globus token Level: intermediate .seealso: PetscURLShorten(), PetscGoogleDriveAuthorize(), PetscGoogleDriveRefresh(), PetscGlobusAuthorize() @*/ PetscErrorCode PetscGlobusUpload(MPI_Comm comm,const char access_token[],const char filename[]) { SSL_CTX *ctx; SSL *ssl; int sock; PetscErrorCode ierr; char head[4096],buff[8*1024],body[4096],submission_id[4096]; PetscMPIInt rank; PetscBool flg,found; PetscFunctionBegin; ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); if (rank == 0) { ierr = PetscTestFile(filename,'r',&flg);CHKERRQ(ierr); if (!flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Unable to find file: %s",filename); ierr = PetscStrcpy(head,"Authorization : Globus-Goauthtoken ");CHKERRQ(ierr); if (access_token) { ierr = PetscStrcat(head,access_token);CHKERRQ(ierr); } else { PetscBool set; char accesstoken[4096]; ierr = PetscOptionsGetString(NULL,NULL,"-globus_access_token",accesstoken,sizeof(accesstoken),&set);CHKERRQ(ierr); if (!set) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Pass in Globus accesstoken or use -globus_access_token XXX"); ierr = PetscStrcat(head,accesstoken);CHKERRQ(ierr); } ierr = PetscStrcat(head,"\r\n");CHKERRQ(ierr); /* Get Globus submission id */ ierr = PetscSSLInitializeContext(&ctx);CHKERRQ(ierr); ierr = PetscHTTPSConnect("transfer.api.globusonline.org",443,ctx,&sock,&ssl);CHKERRQ(ierr); ierr = PetscHTTPSRequest("GET","transfer.api.globusonline.org/v0.10/submission_id",head,"application/json",NULL,ssl,buff,sizeof(buff));CHKERRQ(ierr); ierr = PetscSSLDestroyContext(ctx);CHKERRQ(ierr); close(sock); ierr = PetscPullJSONValue(buff,"value",submission_id,sizeof(submission_id),&found);CHKERRQ(ierr); if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Globus did not return submission id"); /* build JSON body of transfer request */ ierr = PetscStrcpy(body,"{");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"submission_id",submission_id,sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"DATA_TYPE","transfer",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"sync_level","null",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"source_endpoint","barryfsmith#MacBookPro",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"label","PETSc transfer label",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"length","1",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"destination_endpoint","mcs#home",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscStrcat(body,"\"DATA\": [ {");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"source_path","/~/FEM_GPU.pdf",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"destination_path","/~/FEM_GPU.pdf",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"verify_size","null",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"recursive","false",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,",");CHKERRQ(ierr); ierr = PetscPushJSONValue(body,"DATA_TYPE","transfer_item",sizeof(body));CHKERRQ(ierr); ierr = PetscStrcat(body,"} ] }");CHKERRQ(ierr); ierr = PetscSSLInitializeContext(&ctx);CHKERRQ(ierr); ierr = PetscHTTPSConnect("transfer.api.globusonline.org",443,ctx,&sock,&ssl);CHKERRQ(ierr); ierr = PetscHTTPSRequest("POST","transfer.api.globusonline.org/v0.10/transfer",head,"application/json",body,ssl,buff,sizeof(buff));CHKERRQ(ierr); ierr = PetscSSLDestroyContext(ctx);CHKERRQ(ierr); close(sock); ierr = PetscPullJSONValue(buff,"code",submission_id,sizeof(submission_id),&found);CHKERRQ(ierr); if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Globus did not return code on transfer"); ierr = PetscStrcmp(submission_id,"Accepted",&found);CHKERRQ(ierr); if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Globus did not accept transfer"); } PetscFunctionReturn(0); }