/* Include "petsctao.h" so that we can use TAO solvers. Note that this file automatically includes libraries such as: petsc.h - base PETSc routines petscvec.h - vectors petscsys.h - system routines petscmat.h - matrices petscis.h - index sets petscksp.h - Krylov subspace methods petscviewer.h - viewers petscpc.h - preconditioners */ #include /* Description: These data are the result of a NIST study involving ultrasonic calibration. The response variable is ultrasonic response, and the predictor variable is metal distance. Reference: Chwirut, D., NIST (197?). Ultrasonic Reference Block Study. */ static char help[]="Finds the nonlinear least-squares solution to the model \n\ y = exp[-b1*x]/(b2+b3*x) + e \n"; /* T Concepts: TAO^Solving a system of nonlinear equations, nonlinear least squares Routines: TaoCreate(); Routines: TaoSetType(); Routines: TaoSetResidualRoutine(); Routines: TaoSetMonitor(); Routines: TaoSetInitialVector(); Routines: TaoSetFromOptions(); Routines: TaoSolve(); Routines: TaoDestroy(); Processors: n T*/ #define NOBSERVATIONS 214 #define NPARAMETERS 3 #define DIE_TAG 2000 #define IDLE_TAG 1000 /* User-defined application context */ typedef struct { /* Working space */ PetscReal t[NOBSERVATIONS]; /* array of independent variables of observation */ PetscReal y[NOBSERVATIONS]; /* array of dependent variables */ PetscMPIInt size,rank; } AppCtx; /* User provided Routines */ PetscErrorCode InitializeData(AppCtx *user); PetscErrorCode FormStartingPoint(Vec); PetscErrorCode EvaluateFunction(Tao, Vec, Vec, void *); PetscErrorCode TaskWorker(AppCtx *user); PetscErrorCode StopWorkers(AppCtx *user); PetscErrorCode RunSimulation(PetscReal *x, PetscInt i, PetscReal*f, AppCtx *user); /*--------------------------------------------------------------------*/ int main(int argc,char **argv) { PetscErrorCode ierr; /* used to check for functions returning nonzeros */ Vec x, f; /* solution, function */ Tao tao; /* Tao solver context */ AppCtx user; /* user-defined work context */ /* Initialize TAO and PETSc */ ierr = PetscInitialize(&argc,&argv,(char *)0,help);if (ierr) return ierr; MPI_Comm_size(MPI_COMM_WORLD,&user.size); MPI_Comm_rank(MPI_COMM_WORLD,&user.rank); ierr = InitializeData(&user);CHKERRQ(ierr); /* Run optimization on rank 0 */ if (user.rank == 0) { /* Allocate vectors */ ierr = VecCreateSeq(PETSC_COMM_SELF,NPARAMETERS,&x);CHKERRQ(ierr); ierr = VecCreateSeq(PETSC_COMM_SELF,NOBSERVATIONS,&f);CHKERRQ(ierr); /* TAO code begins here */ /* Create TAO solver and set desired solution method */ ierr = TaoCreate(PETSC_COMM_SELF,&tao);CHKERRQ(ierr); ierr = TaoSetType(tao,TAOPOUNDERS);CHKERRQ(ierr); /* Set the function and Jacobian routines. */ ierr = FormStartingPoint(x);CHKERRQ(ierr); ierr = TaoSetInitialVector(tao,x);CHKERRQ(ierr); ierr = TaoSetResidualRoutine(tao,f,EvaluateFunction,(void*)&user);CHKERRQ(ierr); /* Check for any TAO command line arguments */ ierr = TaoSetFromOptions(tao);CHKERRQ(ierr); /* Perform the Solve */ ierr = TaoSolve(tao);CHKERRQ(ierr); /* Free TAO data structures */ ierr = TaoDestroy(&tao);CHKERRQ(ierr); /* Free PETSc data structures */ ierr = VecDestroy(&x);CHKERRQ(ierr); ierr = VecDestroy(&f);CHKERRQ(ierr); StopWorkers(&user); } else { TaskWorker(&user); } ierr = PetscFinalize(); return ierr; } /*--------------------------------------------------------------------*/ PetscErrorCode EvaluateFunction(Tao tao, Vec X, Vec F, void *ptr) { AppCtx *user = (AppCtx *)ptr; PetscInt i; PetscReal *x,*f; PetscErrorCode ierr; PetscFunctionBegin; ierr = VecGetArray(X,&x);CHKERRQ(ierr); ierr = VecGetArray(F,&f);CHKERRQ(ierr); if (user->size == 1) { /* Single processor */ for (i=0;isize-1) { ierr = MPI_Recv(&f_i,1,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&status);CHKERRMPI(ierr); if (status.MPI_TAG == IDLE_TAG) { checkedin++; } else { tag = status.MPI_TAG; f[tag] = (PetscReal)f_i; finishedtasks++; } if (next_taskt,*y=user->y; PetscInt i=0; PetscFunctionBegin; y[i] = 92.9000; t[i++] = 0.5000; y[i] = 78.7000; t[i++] = 0.6250; y[i] = 64.2000; t[i++] = 0.7500; y[i] = 64.9000; t[i++] = 0.8750; y[i] = 57.1000; t[i++] = 1.0000; y[i] = 43.3000; t[i++] = 1.2500; y[i] = 31.1000; t[i++] = 1.7500; y[i] = 23.6000; t[i++] = 2.2500; y[i] = 31.0500; t[i++] = 1.7500; y[i] = 23.7750; t[i++] = 2.2500; y[i] = 17.7375; t[i++] = 2.7500; y[i] = 13.8000; t[i++] = 3.2500; y[i] = 11.5875; t[i++] = 3.7500; y[i] = 9.4125; t[i++] = 4.2500; y[i] = 7.7250; t[i++] = 4.7500; y[i] = 7.3500; t[i++] = 5.2500; y[i] = 8.0250; t[i++] = 5.7500; y[i] = 90.6000; t[i++] = 0.5000; y[i] = 76.9000; t[i++] = 0.6250; y[i] = 71.6000; t[i++] = 0.7500; y[i] = 63.6000; t[i++] = 0.8750; y[i] = 54.0000; t[i++] = 1.0000; y[i] = 39.2000; t[i++] = 1.2500; y[i] = 29.3000; t[i++] = 1.7500; y[i] = 21.4000; t[i++] = 2.2500; y[i] = 29.1750; t[i++] = 1.7500; y[i] = 22.1250; t[i++] = 2.2500; y[i] = 17.5125; t[i++] = 2.7500; y[i] = 14.2500; t[i++] = 3.2500; y[i] = 9.4500; t[i++] = 3.7500; y[i] = 9.1500; t[i++] = 4.2500; y[i] = 7.9125; t[i++] = 4.7500; y[i] = 8.4750; t[i++] = 5.2500; y[i] = 6.1125; t[i++] = 5.7500; y[i] = 80.0000; t[i++] = 0.5000; y[i] = 79.0000; t[i++] = 0.6250; y[i] = 63.8000; t[i++] = 0.7500; y[i] = 57.2000; t[i++] = 0.8750; y[i] = 53.2000; t[i++] = 1.0000; y[i] = 42.5000; t[i++] = 1.2500; y[i] = 26.8000; t[i++] = 1.7500; y[i] = 20.4000; t[i++] = 2.2500; y[i] = 26.8500; t[i++] = 1.7500; y[i] = 21.0000; t[i++] = 2.2500; y[i] = 16.4625; t[i++] = 2.7500; y[i] = 12.5250; t[i++] = 3.2500; y[i] = 10.5375; t[i++] = 3.7500; y[i] = 8.5875; t[i++] = 4.2500; y[i] = 7.1250; t[i++] = 4.7500; y[i] = 6.1125; t[i++] = 5.2500; y[i] = 5.9625; t[i++] = 5.7500; y[i] = 74.1000; t[i++] = 0.5000; y[i] = 67.3000; t[i++] = 0.6250; y[i] = 60.8000; t[i++] = 0.7500; y[i] = 55.5000; t[i++] = 0.8750; y[i] = 50.3000; t[i++] = 1.0000; y[i] = 41.0000; t[i++] = 1.2500; y[i] = 29.4000; t[i++] = 1.7500; y[i] = 20.4000; t[i++] = 2.2500; y[i] = 29.3625; t[i++] = 1.7500; y[i] = 21.1500; t[i++] = 2.2500; y[i] = 16.7625; t[i++] = 2.7500; y[i] = 13.2000; t[i++] = 3.2500; y[i] = 10.8750; t[i++] = 3.7500; y[i] = 8.1750; t[i++] = 4.2500; y[i] = 7.3500; t[i++] = 4.7500; y[i] = 5.9625; t[i++] = 5.2500; y[i] = 5.6250; t[i++] = 5.7500; y[i] = 81.5000; t[i++] = .5000; y[i] = 62.4000; t[i++] = .7500; y[i] = 32.5000; t[i++] = 1.5000; y[i] = 12.4100; t[i++] = 3.0000; y[i] = 13.1200; t[i++] = 3.0000; y[i] = 15.5600; t[i++] = 3.0000; y[i] = 5.6300; t[i++] = 6.0000; y[i] = 78.0000; t[i++] = .5000; y[i] = 59.9000; t[i++] = .7500; y[i] = 33.2000; t[i++] = 1.5000; y[i] = 13.8400; t[i++] = 3.0000; y[i] = 12.7500; t[i++] = 3.0000; y[i] = 14.6200; t[i++] = 3.0000; y[i] = 3.9400; t[i++] = 6.0000; y[i] = 76.8000; t[i++] = .5000; y[i] = 61.0000; t[i++] = .7500; y[i] = 32.9000; t[i++] = 1.5000; y[i] = 13.8700; t[i++] = 3.0000; y[i] = 11.8100; t[i++] = 3.0000; y[i] = 13.3100; t[i++] = 3.0000; y[i] = 5.4400; t[i++] = 6.0000; y[i] = 78.0000; t[i++] = .5000; y[i] = 63.5000; t[i++] = .7500; y[i] = 33.8000; t[i++] = 1.5000; y[i] = 12.5600; t[i++] = 3.0000; y[i] = 5.6300; t[i++] = 6.0000; y[i] = 12.7500; t[i++] = 3.0000; y[i] = 13.1200; t[i++] = 3.0000; y[i] = 5.4400; t[i++] = 6.0000; y[i] = 76.8000; t[i++] = .5000; y[i] = 60.0000; t[i++] = .7500; y[i] = 47.8000; t[i++] = 1.0000; y[i] = 32.0000; t[i++] = 1.5000; y[i] = 22.2000; t[i++] = 2.0000; y[i] = 22.5700; t[i++] = 2.0000; y[i] = 18.8200; t[i++] = 2.5000; y[i] = 13.9500; t[i++] = 3.0000; y[i] = 11.2500; t[i++] = 4.0000; y[i] = 9.0000; t[i++] = 5.0000; y[i] = 6.6700; t[i++] = 6.0000; y[i] = 75.8000; t[i++] = .5000; y[i] = 62.0000; t[i++] = .7500; y[i] = 48.8000; t[i++] = 1.0000; y[i] = 35.2000; t[i++] = 1.5000; y[i] = 20.0000; t[i++] = 2.0000; y[i] = 20.3200; t[i++] = 2.0000; y[i] = 19.3100; t[i++] = 2.5000; y[i] = 12.7500; t[i++] = 3.0000; y[i] = 10.4200; t[i++] = 4.0000; y[i] = 7.3100; t[i++] = 5.0000; y[i] = 7.4200; t[i++] = 6.0000; y[i] = 70.5000; t[i++] = .5000; y[i] = 59.5000; t[i++] = .7500; y[i] = 48.5000; t[i++] = 1.0000; y[i] = 35.8000; t[i++] = 1.5000; y[i] = 21.0000; t[i++] = 2.0000; y[i] = 21.6700; t[i++] = 2.0000; y[i] = 21.0000; t[i++] = 2.5000; y[i] = 15.6400; t[i++] = 3.0000; y[i] = 8.1700; t[i++] = 4.0000; y[i] = 8.5500; t[i++] = 5.0000; y[i] = 10.1200; t[i++] = 6.0000; y[i] = 78.0000; t[i++] = .5000; y[i] = 66.0000; t[i++] = .6250; y[i] = 62.0000; t[i++] = .7500; y[i] = 58.0000; t[i++] = .8750; y[i] = 47.7000; t[i++] = 1.0000; y[i] = 37.8000; t[i++] = 1.2500; y[i] = 20.2000; t[i++] = 2.2500; y[i] = 21.0700; t[i++] = 2.2500; y[i] = 13.8700; t[i++] = 2.7500; y[i] = 9.6700; t[i++] = 3.2500; y[i] = 7.7600; t[i++] = 3.7500; y[i] = 5.4400; t[i++] = 4.2500; y[i] = 4.8700; t[i++] = 4.7500; y[i] = 4.0100; t[i++] = 5.2500; y[i] = 3.7500; t[i++] = 5.7500; y[i] = 24.1900; t[i++] = 3.0000; y[i] = 25.7600; t[i++] = 3.0000; y[i] = 18.0700; t[i++] = 3.0000; y[i] = 11.8100; t[i++] = 3.0000; y[i] = 12.0700; t[i++] = 3.0000; y[i] = 16.1200; t[i++] = 3.0000; y[i] = 70.8000; t[i++] = .5000; y[i] = 54.7000; t[i++] = .7500; y[i] = 48.0000; t[i++] = 1.0000; y[i] = 39.8000; t[i++] = 1.5000; y[i] = 29.8000; t[i++] = 2.0000; y[i] = 23.7000; t[i++] = 2.5000; y[i] = 29.6200; t[i++] = 2.0000; y[i] = 23.8100; t[i++] = 2.5000; y[i] = 17.7000; t[i++] = 3.0000; y[i] = 11.5500; t[i++] = 4.0000; y[i] = 12.0700; t[i++] = 5.0000; y[i] = 8.7400; t[i++] = 6.0000; y[i] = 80.7000; t[i++] = .5000; y[i] = 61.3000; t[i++] = .7500; y[i] = 47.5000; t[i++] = 1.0000; y[i] = 29.0000; t[i++] = 1.5000; y[i] = 24.0000; t[i++] = 2.0000; y[i] = 17.7000; t[i++] = 2.5000; y[i] = 24.5600; t[i++] = 2.0000; y[i] = 18.6700; t[i++] = 2.5000; y[i] = 16.2400; t[i++] = 3.0000; y[i] = 8.7400; t[i++] = 4.0000; y[i] = 7.8700; t[i++] = 5.0000; y[i] = 8.5100; t[i++] = 6.0000; y[i] = 66.7000; t[i++] = .5000; y[i] = 59.2000; t[i++] = .7500; y[i] = 40.8000; t[i++] = 1.0000; y[i] = 30.7000; t[i++] = 1.5000; y[i] = 25.7000; t[i++] = 2.0000; y[i] = 16.3000; t[i++] = 2.5000; y[i] = 25.9900; t[i++] = 2.0000; y[i] = 16.9500; t[i++] = 2.5000; y[i] = 13.3500; t[i++] = 3.0000; y[i] = 8.6200; t[i++] = 4.0000; y[i] = 7.2000; t[i++] = 5.0000; y[i] = 6.6400; t[i++] = 6.0000; y[i] = 13.6900; t[i++] = 3.0000; y[i] = 81.0000; t[i++] = .5000; y[i] = 64.5000; t[i++] = .7500; y[i] = 35.5000; t[i++] = 1.5000; y[i] = 13.3100; t[i++] = 3.0000; y[i] = 4.8700; t[i++] = 6.0000; y[i] = 12.9400; t[i++] = 3.0000; y[i] = 5.0600; t[i++] = 6.0000; y[i] = 15.1900; t[i++] = 3.0000; y[i] = 14.6200; t[i++] = 3.0000; y[i] = 15.6400; t[i++] = 3.0000; y[i] = 25.5000; t[i++] = 1.7500; y[i] = 25.9500; t[i++] = 1.7500; y[i] = 81.7000; t[i++] = .5000; y[i] = 61.6000; t[i++] = .7500; y[i] = 29.8000; t[i++] = 1.7500; y[i] = 29.8100; t[i++] = 1.7500; y[i] = 17.1700; t[i++] = 2.7500; y[i] = 10.3900; t[i++] = 3.7500; y[i] = 28.4000; t[i++] = 1.7500; y[i] = 28.6900; t[i++] = 1.7500; y[i] = 81.3000; t[i++] = .5000; y[i] = 60.9000; t[i++] = .7500; y[i] = 16.6500; t[i++] = 2.7500; y[i] = 10.0500; t[i++] = 3.7500; y[i] = 28.9000; t[i++] = 1.7500; y[i] = 28.9500; t[i++] = 1.7500; PetscFunctionReturn(0); } PetscErrorCode TaskWorker(AppCtx *user) { PetscReal x[NPARAMETERS],f = 0.0; PetscMPIInt tag=IDLE_TAG; PetscInt index; MPI_Status status; PetscErrorCode ierr; PetscFunctionBegin; /* Send check-in message to rank-0 */ ierr = MPI_Send(&f,1,MPIU_REAL,0,IDLE_TAG,PETSC_COMM_WORLD);CHKERRMPI(ierr); while (tag != DIE_TAG) { ierr = MPI_Recv(x,NPARAMETERS,MPIU_REAL,0,MPI_ANY_TAG,PETSC_COMM_WORLD,&status);CHKERRMPI(ierr); tag = status.MPI_TAG; if (tag == IDLE_TAG) { ierr = MPI_Send(&f,1,MPIU_REAL,0,IDLE_TAG,PETSC_COMM_WORLD);CHKERRMPI(ierr); } else if (tag != DIE_TAG) { index = (PetscInt)tag; ierr = RunSimulation(x,index,&f,user);CHKERRQ(ierr); ierr = MPI_Send(&f,1,MPIU_REAL,0,tag,PETSC_COMM_WORLD);CHKERRMPI(ierr); } } PetscFunctionReturn(0); } PetscErrorCode RunSimulation(PetscReal *x, PetscInt i, PetscReal*f, AppCtx *user) { PetscReal *t = user->t; PetscReal *y = user->y; #if defined(PETSC_USE_REAL_SINGLE) *f = y[i] - exp(-x[0]*t[i])/(x[1] + x[2]*t[i]); /* expf() for single-precision breaks this example on freebsd, valgrind errors on linux */ #else *f = y[i] - PetscExpScalar(-x[0]*t[i])/(x[1] + x[2]*t[i]); #endif return(0); } PetscErrorCode StopWorkers(AppCtx *user) { PetscInt checkedin; MPI_Status status; PetscReal f,x[NPARAMETERS]; PetscErrorCode ierr; PetscFunctionBegin; checkedin=0; while (checkedin < user->size-1) { ierr = MPI_Recv(&f,1,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&status);CHKERRMPI(ierr); checkedin++; ierr = PetscArrayzero(x,NPARAMETERS);CHKERRQ(ierr); ierr = MPI_Send(x,NPARAMETERS,MPIU_REAL,status.MPI_SOURCE,DIE_TAG,PETSC_COMM_WORLD);CHKERRMPI(ierr); } PetscFunctionReturn(0); } /*TEST build: requires: !complex test: nsize: 3 requires: !single args: -tao_smonitor -tao_max_it 100 -tao_type pounders -tao_gatol 1.e-5 TEST*/