/* Code for timestepping with BDF methods */ #include /*I "petscts.h" I*/ #include static PetscBool cited = PETSC_FALSE; static const char citation[] = "@book{Brenan1995,\n" " title = {Numerical Solution of Initial-Value Problems in Differential-Algebraic Equations},\n" " author = {Brenan, K. and Campbell, S. and Petzold, L.},\n" " publisher = {Society for Industrial and Applied Mathematics},\n" " year = {1995},\n" " doi = {10.1137/1.9781611971224},\n}\n"; typedef struct { PetscInt k,n; PetscReal time[6+2]; Vec work[6+2]; Vec tvwork[6+2]; PetscReal shift; Vec vec_dot; /* Xdot when !transientvar, else Cdot where C(X) is the transient variable. */ Vec vec_wrk; Vec vec_lte; PetscBool transientvar; PetscInt order; TSStepStatus status; } TS_BDF; /* Compute Lagrange polynomials on T[:n] evaluated at t. * If one has data (T[i], Y[i]), then the interpolation/extrapolation is f(t) = \sum_i L[i]*Y[i]. */ PETSC_STATIC_INLINE void LagrangeBasisVals(PetscInt n,PetscReal t,const PetscReal T[],PetscScalar L[]) { PetscInt k,j; for (k=0; kdata; PetscErrorCode ierr; PetscFunctionBegin; if (dm && dm != ts->dm) { ierr = DMGetNamedGlobalVector(dm,"TSBDF_Vec_Xdot",Xdot);CHKERRQ(ierr); ierr = DMGetNamedGlobalVector(dm,"TSBDF_Vec_Ydot",Ydot);CHKERRQ(ierr); } else { *Xdot = bdf->vec_dot; *Ydot = bdf->vec_wrk; } PetscFunctionReturn(0); } static PetscErrorCode TSBDF_RestoreVecs(TS ts,DM dm,Vec *Xdot,Vec *Ydot) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscErrorCode ierr; PetscFunctionBegin; if (dm && dm != ts->dm) { ierr = DMRestoreNamedGlobalVector(dm,"TSBDF_Vec_Xdot",Xdot);CHKERRQ(ierr); ierr = DMRestoreNamedGlobalVector(dm,"TSBDF_Vec_Ydot",Ydot);CHKERRQ(ierr); } else { if (*Xdot != bdf->vec_dot) SETERRQ(PetscObjectComm((PetscObject)ts),PETSC_ERR_ARG_INCOMP,"Vec does not match the cache"); if (*Ydot != bdf->vec_wrk) SETERRQ(PetscObjectComm((PetscObject)ts),PETSC_ERR_ARG_INCOMP,"Vec does not match the cache"); *Xdot = NULL; *Ydot = NULL; } PetscFunctionReturn(0); } static PetscErrorCode DMCoarsenHook_TSBDF(DM fine,DM coarse,void *ctx) { PetscFunctionBegin; PetscFunctionReturn(0); } static PetscErrorCode DMRestrictHook_TSBDF(DM fine,Mat restrct,Vec rscale,Mat inject,DM coarse,void *ctx) { TS ts = (TS)ctx; Vec Ydot,Ydot_c; Vec Xdot,Xdot_c; PetscErrorCode ierr; PetscFunctionBegin; ierr = TSBDF_GetVecs(ts,fine,&Xdot,&Ydot);CHKERRQ(ierr); ierr = TSBDF_GetVecs(ts,coarse,&Xdot_c,&Ydot_c);CHKERRQ(ierr); ierr = MatRestrict(restrct,Ydot,Ydot_c);CHKERRQ(ierr); ierr = VecPointwiseMult(Ydot_c,rscale,Ydot_c);CHKERRQ(ierr); ierr = TSBDF_RestoreVecs(ts,fine,&Xdot,&Ydot);CHKERRQ(ierr); ierr = TSBDF_RestoreVecs(ts,coarse,&Xdot_c,&Ydot_c);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode TSBDF_Advance(TS ts,PetscReal t,Vec X) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscInt i,n = (PetscInt)(sizeof(bdf->work)/sizeof(Vec)); Vec tail = bdf->work[n-1],tvtail = bdf->tvwork[n-1]; PetscErrorCode ierr; PetscFunctionBegin; for (i=n-1; i>=2; i--) { bdf->time[i] = bdf->time[i-1]; bdf->work[i] = bdf->work[i-1]; bdf->tvwork[i] = bdf->tvwork[i-1]; } bdf->n = PetscMin(bdf->n+1,n-1); bdf->time[1] = t; bdf->work[1] = tail; bdf->tvwork[1] = tvtail; ierr = VecCopy(X,tail);CHKERRQ(ierr); ierr = TSComputeTransientVariable(ts,tail,tvtail);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode TSBDF_VecLTE(TS ts,PetscInt order,Vec lte) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscInt i,n = order+1; PetscReal *time = bdf->time; Vec *vecs = bdf->work; PetscScalar a[8],b[8],alpha[8]; PetscErrorCode ierr; PetscFunctionBegin; LagrangeBasisDers(n+0,time[0],time,a); a[n] =0; LagrangeBasisDers(n+1,time[0],time,b); for (i=0; idata; PetscInt n = order+1; PetscReal *time = bdf->time+1; Vec *vecs = bdf->work+1; PetscScalar alpha[7]; PetscErrorCode ierr; PetscFunctionBegin; n = PetscMin(n,bdf->n); LagrangeBasisVals(n,t,time,alpha); ierr = VecZeroEntries(X);CHKERRQ(ierr); ierr = VecMAXPY(X,n,alpha,vecs);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode TSBDF_Interpolate(TS ts,PetscInt order,PetscReal t,Vec X) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscInt n = order+1; PetscReal *time = bdf->time; Vec *vecs = bdf->work; PetscScalar alpha[7]; PetscErrorCode ierr; PetscFunctionBegin; LagrangeBasisVals(n,t,time,alpha); ierr = VecZeroEntries(X);CHKERRQ(ierr); ierr = VecMAXPY(X,n,alpha,vecs);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Compute the affine term V0 such that Xdot = shift*X + V0. * * When using transient variables, we're computing Cdot = shift*C(X) + V0, and thus choose a linear combination of tvwork. */ static PetscErrorCode TSBDF_PreSolve(TS ts) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscInt i,n = PetscMax(bdf->k,1) + 1; Vec V,V0; Vec vecs[7]; PetscScalar alpha[7]; PetscErrorCode ierr; PetscFunctionBegin; ierr = TSBDF_GetVecs(ts,NULL,&V,&V0);CHKERRQ(ierr); LagrangeBasisDers(n,bdf->time[0],bdf->time,alpha); for (i=1; itransientvar ? bdf->tvwork[i] : bdf->work[i]; } ierr = VecZeroEntries(V0);CHKERRQ(ierr); ierr = VecMAXPY(V0,n-1,alpha+1,vecs+1);CHKERRQ(ierr); bdf->shift = PetscRealPart(alpha[0]); ierr = TSBDF_RestoreVecs(ts,NULL,&V,&V0);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode TSBDF_SNESSolve(TS ts,Vec b,Vec x) { PetscInt nits,lits; PetscErrorCode ierr; PetscFunctionBegin; ierr = TSBDF_PreSolve(ts);CHKERRQ(ierr); ierr = SNESSolve(ts->snes,b,x);CHKERRQ(ierr); ierr = SNESGetIterationNumber(ts->snes,&nits);CHKERRQ(ierr); ierr = SNESGetLinearSolveIterations(ts->snes,&lits);CHKERRQ(ierr); ts->snes_its += nits; ts->ksp_its += lits; PetscFunctionReturn(0); } static PetscErrorCode TSBDF_Restart(TS ts,PetscBool *accept) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscErrorCode ierr; PetscFunctionBegin; bdf->k = 1; bdf->n = 0; ierr = TSBDF_Advance(ts,ts->ptime,ts->vec_sol);CHKERRQ(ierr); bdf->time[0] = ts->ptime + ts->time_step/2; ierr = VecCopy(bdf->work[1],bdf->work[0]);CHKERRQ(ierr); ierr = TSPreStage(ts,bdf->time[0]);CHKERRQ(ierr); ierr = TSBDF_SNESSolve(ts,NULL,bdf->work[0]);CHKERRQ(ierr); ierr = TSPostStage(ts,bdf->time[0],0,&bdf->work[0]);CHKERRQ(ierr); ierr = TSAdaptCheckStage(ts->adapt,ts,bdf->time[0],bdf->work[0],accept);CHKERRQ(ierr); if (!*accept) PetscFunctionReturn(0); bdf->k = PetscMin(2,bdf->order); bdf->n++; ierr = VecCopy(bdf->work[0],bdf->work[2]);CHKERRQ(ierr); bdf->time[2] = bdf->time[0]; ierr = TSComputeTransientVariable(ts,bdf->work[2],bdf->tvwork[2]);CHKERRQ(ierr); PetscFunctionReturn(0); } static const char *const BDF_SchemeName[] = {"", "1", "2", "3", "4", "5", "6"}; static PetscErrorCode TSStep_BDF(TS ts) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscInt rejections = 0; PetscBool stageok,accept = PETSC_TRUE; PetscReal next_time_step = ts->time_step; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscCitationsRegister(citation,&cited);CHKERRQ(ierr); if (!ts->steprollback && !ts->steprestart) { bdf->k = PetscMin(bdf->k+1,bdf->order); ierr = TSBDF_Advance(ts,ts->ptime,ts->vec_sol);CHKERRQ(ierr); } bdf->status = TS_STEP_INCOMPLETE; while (!ts->reason && bdf->status != TS_STEP_COMPLETE) { if (ts->steprestart) { ierr = TSBDF_Restart(ts,&stageok);CHKERRQ(ierr); if (!stageok) goto reject_step; } bdf->time[0] = ts->ptime + ts->time_step; ierr = TSBDF_Extrapolate(ts,bdf->k-(accept?0:1),bdf->time[0],bdf->work[0]);CHKERRQ(ierr); ierr = TSPreStage(ts,bdf->time[0]);CHKERRQ(ierr); ierr = TSBDF_SNESSolve(ts,NULL,bdf->work[0]);CHKERRQ(ierr); ierr = TSPostStage(ts,bdf->time[0],0,&bdf->work[0]);CHKERRQ(ierr); ierr = TSAdaptCheckStage(ts->adapt,ts,bdf->time[0],bdf->work[0],&stageok);CHKERRQ(ierr); if (!stageok) goto reject_step; bdf->status = TS_STEP_PENDING; ierr = TSAdaptCandidatesClear(ts->adapt);CHKERRQ(ierr); ierr = TSAdaptCandidateAdd(ts->adapt,BDF_SchemeName[bdf->k],bdf->k,1,1.0,1.0,PETSC_TRUE);CHKERRQ(ierr); ierr = TSAdaptChoose(ts->adapt,ts,ts->time_step,NULL,&next_time_step,&accept);CHKERRQ(ierr); bdf->status = accept ? TS_STEP_COMPLETE : TS_STEP_INCOMPLETE; if (!accept) { ts->time_step = next_time_step; goto reject_step; } ierr = VecCopy(bdf->work[0],ts->vec_sol);CHKERRQ(ierr); ts->ptime += ts->time_step; ts->time_step = next_time_step; break; reject_step: ts->reject++; accept = PETSC_FALSE; if (!ts->reason && ++rejections > ts->max_reject && ts->max_reject >= 0) { ierr = PetscInfo2(ts,"Step=%D, step rejections %D greater than current TS allowed, stopping solve\n",ts->steps,rejections);CHKERRQ(ierr); ts->reason = TS_DIVERGED_STEP_REJECTED; } } PetscFunctionReturn(0); } static PetscErrorCode TSInterpolate_BDF(TS ts,PetscReal t,Vec X) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = TSBDF_Interpolate(ts,bdf->k,t,X);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode TSEvaluateWLTE_BDF(TS ts,NormType wnormtype,PetscInt *order,PetscReal *wlte) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscInt k = bdf->k; PetscReal wltea,wlter; Vec X = bdf->work[0], Y = bdf->vec_lte; PetscErrorCode ierr; PetscFunctionBegin; k = PetscMin(k,bdf->n-1); ierr = TSBDF_VecLTE(ts,k,Y);CHKERRQ(ierr); ierr = VecAXPY(Y,1,X);CHKERRQ(ierr); ierr = TSErrorWeightedNorm(ts,X,Y,wnormtype,wlte,&wltea,&wlter);CHKERRQ(ierr); if (order) *order = k + 1; PetscFunctionReturn(0); } static PetscErrorCode TSRollBack_BDF(TS ts) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = VecCopy(bdf->work[1],ts->vec_sol);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode SNESTSFormFunction_BDF(SNES snes,Vec X,Vec F,TS ts) { TS_BDF *bdf = (TS_BDF*)ts->data; DM dm, dmsave = ts->dm; PetscReal t = bdf->time[0]; PetscReal shift = bdf->shift; Vec V,V0; PetscErrorCode ierr; PetscFunctionBegin; ierr = SNESGetDM(snes,&dm);CHKERRQ(ierr); ierr = TSBDF_GetVecs(ts,dm,&V,&V0);CHKERRQ(ierr); if (bdf->transientvar) { /* shift*C(X) + V0 */ ierr = TSComputeTransientVariable(ts,X,V);CHKERRQ(ierr); ierr = VecAYPX(V,shift,V0);CHKERRQ(ierr); } else { /* shift*X + V0 */ ierr = VecWAXPY(V,shift,X,V0);CHKERRQ(ierr); } /* F = Function(t,X,V) */ ts->dm = dm; ierr = TSComputeIFunction(ts,t,X,V,F,PETSC_FALSE);CHKERRQ(ierr); ts->dm = dmsave; ierr = TSBDF_RestoreVecs(ts,dm,&V,&V0);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode SNESTSFormJacobian_BDF(SNES snes,Vec X,Mat J,Mat P,TS ts) { TS_BDF *bdf = (TS_BDF*)ts->data; DM dm, dmsave = ts->dm; PetscReal t = bdf->time[0]; PetscReal shift = bdf->shift; Vec V,V0; PetscErrorCode ierr; PetscFunctionBegin; ierr = SNESGetDM(snes,&dm);CHKERRQ(ierr); ierr = TSBDF_GetVecs(ts,dm,&V,&V0);CHKERRQ(ierr); /* J,P = Jacobian(t,X,V) */ ts->dm = dm; ierr = TSComputeIJacobian(ts,t,X,V,shift,J,P,PETSC_FALSE);CHKERRQ(ierr); ts->dm = dmsave; ierr = TSBDF_RestoreVecs(ts,dm,&V,&V0);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode TSReset_BDF(TS ts) { TS_BDF *bdf = (TS_BDF*)ts->data; size_t i,n = sizeof(bdf->work)/sizeof(Vec); PetscErrorCode ierr; PetscFunctionBegin; bdf->k = bdf->n = 0; for (i=0; iwork[i]);CHKERRQ(ierr); ierr = VecDestroy(&bdf->tvwork[i]);CHKERRQ(ierr); } ierr = VecDestroy(&bdf->vec_dot);CHKERRQ(ierr); ierr = VecDestroy(&bdf->vec_wrk);CHKERRQ(ierr); ierr = VecDestroy(&bdf->vec_lte);CHKERRQ(ierr); if (ts->dm) {ierr = DMCoarsenHookRemove(ts->dm,DMCoarsenHook_TSBDF,DMRestrictHook_TSBDF,ts);CHKERRQ(ierr);} PetscFunctionReturn(0); } static PetscErrorCode TSDestroy_BDF(TS ts) { PetscErrorCode ierr; PetscFunctionBegin; ierr = TSReset_BDF(ts);CHKERRQ(ierr); ierr = PetscFree(ts->data);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)ts,"TSBDFSetOrder_C",NULL);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)ts,"TSBDFGetOrder_C",NULL);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode TSSetUp_BDF(TS ts) { TS_BDF *bdf = (TS_BDF*)ts->data; size_t i,n = sizeof(bdf->work)/sizeof(Vec); PetscReal low,high,two = 2; PetscErrorCode ierr; PetscFunctionBegin; ierr = TSHasTransientVariable(ts,&bdf->transientvar);CHKERRQ(ierr); bdf->k = bdf->n = 0; for (i=0; ivec_sol,&bdf->work[i]);CHKERRQ(ierr); if (i && bdf->transientvar) { ierr = VecDuplicate(ts->vec_sol,&bdf->tvwork[i]);CHKERRQ(ierr); } } ierr = VecDuplicate(ts->vec_sol,&bdf->vec_dot);CHKERRQ(ierr); ierr = VecDuplicate(ts->vec_sol,&bdf->vec_wrk);CHKERRQ(ierr); ierr = VecDuplicate(ts->vec_sol,&bdf->vec_lte);CHKERRQ(ierr); ierr = TSGetDM(ts,&ts->dm);CHKERRQ(ierr); ierr = DMCoarsenHookAdd(ts->dm,DMCoarsenHook_TSBDF,DMRestrictHook_TSBDF,ts);CHKERRQ(ierr); ierr = TSGetAdapt(ts,&ts->adapt);CHKERRQ(ierr); ierr = TSAdaptCandidatesClear(ts->adapt);CHKERRQ(ierr); ierr = TSAdaptGetClip(ts->adapt,&low,&high);CHKERRQ(ierr); ierr = TSAdaptSetClip(ts->adapt,low,PetscMin(high,two));CHKERRQ(ierr); ierr = TSGetSNES(ts,&ts->snes);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode TSSetFromOptions_BDF(PetscOptionItems *PetscOptionsObject,TS ts) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscOptionsHead(PetscOptionsObject,"BDF ODE solver options");CHKERRQ(ierr); { PetscBool flg; PetscInt order; ierr = TSBDFGetOrder(ts,&order);CHKERRQ(ierr); ierr = PetscOptionsInt("-ts_bdf_order","Order of the BDF method","TSBDFSetOrder",order,&order,&flg);CHKERRQ(ierr); if (flg) {ierr = TSBDFSetOrder(ts,order);CHKERRQ(ierr);} } ierr = PetscOptionsTail();CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode TSView_BDF(TS ts,PetscViewer viewer) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscBool iascii; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); if (iascii) { ierr = PetscViewerASCIIPrintf(viewer," Order=%D\n",bdf->order);CHKERRQ(ierr); } PetscFunctionReturn(0); } /* ------------------------------------------------------------ */ static PetscErrorCode TSBDFSetOrder_BDF(TS ts,PetscInt order) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscFunctionBegin; if (order == bdf->order) PetscFunctionReturn(0); if (order < 1 || order > 6) SETERRQ1(PetscObjectComm((PetscObject)ts),PETSC_ERR_ARG_OUTOFRANGE,"BDF Order %D not implemented",order); bdf->order = order; PetscFunctionReturn(0); } static PetscErrorCode TSBDFGetOrder_BDF(TS ts,PetscInt *order) { TS_BDF *bdf = (TS_BDF*)ts->data; PetscFunctionBegin; *order = bdf->order; PetscFunctionReturn(0); } /* ------------------------------------------------------------ */ /*MC TSBDF - DAE solver using BDF methods Level: beginner .seealso: TS, TSCreate(), TSSetType() M*/ PETSC_EXTERN PetscErrorCode TSCreate_BDF(TS ts) { TS_BDF *bdf; PetscErrorCode ierr; PetscFunctionBegin; ts->ops->reset = TSReset_BDF; ts->ops->destroy = TSDestroy_BDF; ts->ops->view = TSView_BDF; ts->ops->setup = TSSetUp_BDF; ts->ops->setfromoptions = TSSetFromOptions_BDF; ts->ops->step = TSStep_BDF; ts->ops->evaluatewlte = TSEvaluateWLTE_BDF; ts->ops->rollback = TSRollBack_BDF; ts->ops->interpolate = TSInterpolate_BDF; ts->ops->snesfunction = SNESTSFormFunction_BDF; ts->ops->snesjacobian = SNESTSFormJacobian_BDF; ts->default_adapt_type = TSADAPTBASIC; ts->usessnes = PETSC_TRUE; ierr = PetscNewLog(ts,&bdf);CHKERRQ(ierr); ts->data = (void*)bdf; bdf->status = TS_STEP_COMPLETE; ierr = PetscObjectComposeFunction((PetscObject)ts,"TSBDFSetOrder_C",TSBDFSetOrder_BDF);CHKERRQ(ierr); ierr = PetscObjectComposeFunction((PetscObject)ts,"TSBDFGetOrder_C",TSBDFGetOrder_BDF);CHKERRQ(ierr); ierr = TSBDFSetOrder(ts,2);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------ */ /*@ TSBDFSetOrder - Set the order of the BDF method Logically Collective on TS Input Parameters: + ts - timestepping context - order - order of the method Options Database: . -ts_bdf_order Level: intermediate @*/ PetscErrorCode TSBDFSetOrder(TS ts,PetscInt order) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(ts,TS_CLASSID,1); PetscValidLogicalCollectiveInt(ts,order,2); ierr = PetscTryMethod(ts,"TSBDFSetOrder_C",(TS,PetscInt),(ts,order));CHKERRQ(ierr); PetscFunctionReturn(0); } /*@ TSBDFGetOrder - Get the order of the BDF method Not Collective Input Parameter: . ts - timestepping context Output Parameter: . order - order of the method Level: intermediate @*/ PetscErrorCode TSBDFGetOrder(TS ts,PetscInt *order) { PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(ts,TS_CLASSID,1); PetscValidIntPointer(order,2); ierr = PetscUseMethod(ts,"TSBDFGetOrder_C",(TS,PetscInt*),(ts,order));CHKERRQ(ierr); PetscFunctionReturn(0); }