en Copyright 2025 Java http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#c20d77252dee0f9c80fc6f8b1a6f948e11175edb Merge branch 'jed/promote-examples-tests-tutorials' [petsc/petsc!2610]* jed/promote-examples-tests-tutorials: Promote examples/{tests,tutorials}/ to {tests,tutorials}/ List of files: /petsc/systems/Apple/OSX/bin/makeframework Sun, 22 Mar 2020 01:49:31 +0000 Jed Brown <jed@jedbrown.org> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#c4762a1b19cd2af06abeed90e8f9d34fb975dd94 Promote examples/{tests,tutorials}/ to {tests,tutorials}/This shortens paths and improves consistency between test target namesand paths to the source and output files. Most of the work wascompleted by this script, followed by mild cleanup of nonconformingcases.for makefile in `git ls-files 'src/*makefile'`; do if rg -q 'DIRS.*\bexamples\b' $makefile; then base=$(dirname $makefile) dirs=$(cd $base/examples && ls -d tests tutorials 2>/dev/null | xargs echo) perl -pi -e "s#^(DIRS.*)\bexamples\b#\1${dirs}#" $makefile git rm $base/examples/makefile for t in $dirs; do git mv $base/examples/$t $base/ perl -pi -e "s#^(LOCDIR[[:space:]]*=).*#\1 $base/$t/#" $base/$t done fidonegit grep -l -E -z 'examples/(tutorials|tests)' | xargs -0 perl -pi -e 's#examples/(tutorials|tests)#\1#g'git checkout @ \ src/docs/website/documentation/changes/ \ src/benchmarks/results/ List of files: /petsc/systems/Apple/OSX/bin/makeframework Wed, 18 Mar 2020 15:41:21 +0000 Jed Brown <jed@jedbrown.org> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#e366c154b69cf29c88be23f768f0f07dd2b3250c Merge commit 'd47bf9aaf1e5266cc3f0ff499f934c85788965a9' into jed/fix-matcreatempibaij/maintObtain changed (v3.5) handling of MatMPIBAIJSetPreallocationCSR to matchdocumentation. List of files: /petsc/systems/Apple/OSX/bin/makeframework Wed, 15 Nov 2017 03:23:31 +0000 Jed Brown <jed@jedbrown.org> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#1ceb14c030f320ad962f864c6f8de98a26bbbaf7 Merge branch 'master' into pr263/PierreBdR/ts-domain-error-in-stage/master List of files: /petsc/systems/Apple/OSX/bin/makeframework Fri, 23 Oct 2015 03:37:39 +0000 Barry Smith <bsmith@mcs.anl.gov> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#417c5e9afaacda2cf655e58897fdfc9d4dd1055e Merge branch 'master' into tisaac/dmforestGet 3.6.2 patches* master: (1360 commits) remove nasty memory leak with CUDA code when using block Jacobi with multiple blocks per process print abs in Fortran test example in order to have same result with real and complex builds changed outdate mpirun and -np to mpiexec and -n force sqrt to be taken in the precision of PetscReal in fortran examples continuation line too soon for some compilers stop configure if user selected C++ clanguage, single precision, complex combination since we do not support it fixes for Fortran examples to compile cleanly in single precision that do not involve complex numbers fixes to Fortran examples to compile cleanly in single precision complex fix previous mistake must cast 1. to PetscScalar before dividing by a PetscScalar (C++ complex class is terrible) must cast 0.0 to PetscScalar before comparison with a PetscScalar changed order of suggested locations of downloadable PETSc to Barry's preference Increase patchlevel to 3.6.2 remove debug print statement from two commits before remove debug print statements I accidently left in the last commit PetscDraw: Fix dummy definition of PetscDrawCollective{Begin|End}() remove cleanupMumps flag from MatDestroy_Mumps() it should always free the memory it allocated Bug detected while adding features to libMesh improved viewing of fractional counts in xml nested log viewing fixed bug in output of doubles to xml nested log files chombo: build only libs - not examples fix typo. 'gcc-4.8 --with-cxx-dialect=C++11' gives a warning with this line - even though its in a #ifdef thats never enabled. ... List of files: /petsc/systems/Apple/OSX/bin/makeframework Mon, 05 Oct 2015 16:36:24 +0000 Toby Isaac <tisaac@ices.utexas.edu> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#8d3c1932cd76dc2d1ac854cce48898cc6ac885a3 Merge branch 'tisaac/dmplex-stable-tet-refinement' into tisaac/plex-feature-tree-fvThis feature branch also changed the topology of nonconforming examples:I am merging so that I can make the regression output that should becorrect in master and next* tisaac/dmplex-stable-tet-refinement: (594 commits) plex: added tet shape regression test plexrefine: remove replaced code plex: update test output for new tet refinement order plex: fix tet refinement for stable element shape DMPlex: added test of shape quality to ex1 Better to use the proper error handling version of PetscViewerASCIIGetStdout() instead of PETSC_VIEWER_STDOUT_() Generate a very useful error message if PetscLogView(), PetscLogEventGetPerfInfo() or PetscLogEventGetFlops() is called with a preceeding call to PetscLogBegin() and friends (also -log_summary which triggers a PetscLogBegin()) fix compile warnings Plex: Fix bug with bcComps initialization Turn off elemental shared libraries if --with-shared-libraries=0 is used Bib: Added refs Bib: Fixed a bunch of errors add warning/error flag for '-mat_superlu_dist_parsymbfact' when MatInputMode=GLOBAL makefile: fix format tests: add back ex6f, runex6f targets - that got removed in 2f1d3d565a6a43067e6df75b043e6343b05fcd1d accessing option that may never have been set typo in DMNetworkSetNumVariables() reported by Sean Shahkarami superlu_dist: update to using latest 4.1 version fix compile warnings Generate an error message when trying to overwrite default options of CN and BEULER ... List of files: /petsc/systems/Apple/OSX/bin/makeframework Sat, 29 Aug 2015 19:11:26 +0000 Toby Isaac <tisaac@ices.utexas.edu> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#3aa2d9e3a17455108487be9a174c0f069d9014ad Merge branch 'barry/fix-nonew-notcollective/maint' into jed/mat-assembly-perfJed this fucking 6+ month running thing in next that is not in master is a royal fucking pain in the ass andan abuse of git. I think it is not justified to ever have anything in next for more than a few weeks at most.Either take it out of next if it is broken or put it in master if it is not broken. Hanging around in next butnot master for ever is not a good policy. List of files: /petsc/systems/Apple/OSX/bin/makeframework Sat, 15 Aug 2015 01:10:07 +0000 Barry Smith <bsmith@mcs.anl.gov> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#548caff3eba8cf24d416c3740cab4bbdbccc587d Merge branch 'mat-increaseoverlap' of ssh://bitbucket.org/Fande-Kong/petsc into pr332/master/Fande-Kong/mat-increaseoverlap-scalable List of files: /petsc/systems/Apple/OSX/bin/makeframework Tue, 23 Jun 2015 20:44:43 +0000 Dmitry Karpeev <karpeev@mcs.anl.gov> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#665872a167016cf0ff469d88a989f316d838be52 Merge remote-tracking branch 'petsc/master' into pcgasm-increaseoverlap List of files: /petsc/systems/Apple/OSX/bin/makeframework Mon, 22 Jun 2015 23:49:33 +0000 Fande Kong <fdkong.jd@gmail.com> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#baf50f97de32c6f82bae6e32b51d070ec2e6f8b5 Merge remote-tracking branch 'petsc/master' into matpartitioning-hierach List of files: /petsc/systems/Apple/OSX/bin/makeframework Mon, 22 Jun 2015 23:18:50 +0000 Fande Kong <fdkong.jd@gmail.com> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#1f256a99bacaae4044ad56f4ed7272d8806ac9f4 Merge remote-tracking branch 'petsc/master' into mat-increaseoverlap List of files: /petsc/systems/Apple/OSX/bin/makeframework Mon, 22 Jun 2015 23:16:35 +0000 Fande Kong <fdkong.jd@gmail.com> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#835523d979ae3cbc6e30900e1ab9358405b57630 Merge branch 'master' into knepley/feature-snes-deflation* master: (239 commits) Bib: Moved entry revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html - enable cuda in configure release: set v3.6 strings doc: add PCGAMGSetReuseInterpolation() to changes file fix: workarround static initialization issue (perhaps compiler bug) on opensolaris c/complex build fix: ex40,ex41 errors in src/ts/examples/tutorials/ on bsd with c++/complex Perhaps this code nees a separate section when 'enorm == 0) - as pow(0,-0.33) = inf. manual: fix format more changes.. PCGASM/MatGetSubMatricesMPI() changes in dev.html. changes: more updates Add size checks for static arrays of assumed max size [-Warray-bounds] Doc: Update to Changes configure: default to useThreads= 0as the useThreads=1 code currently prints output in jumbled order [producing hard to read configure.log] Delete PETSc viewer attribute if none are left on the linked list instead of putting an empty attribute MatGetSubMatricesMPI_MPIAIJ(): guard for an empty B-matrix when delogging memory in MatSetSeqMats(). PCBDDC: fix typos in the specification of MPI operation MPIU_SUM was used with MPIU_INT when it should only be used with MPIU_REAL or MPIU_SCALAR fixed bad PetscPrintf() formatting in two examples Plex: In pointwise callbacks, use embedding dimension updates for generating Apple installations due to changes in locations of include files ... List of files: /petsc/systems/Apple/OSX/bin/makeframework Fri, 12 Jun 2015 16:05:34 +0000 Matthew G. Knepley <knepley@gmail.com> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#fae7eefdfb3a535422a10759ec4a8555db93857f Merge branch 'master' into mesgarnejad/feature-plex-globaltonatural* master: (219 commits) revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html - enable cuda in configure release: set v3.6 strings doc: add PCGAMGSetReuseInterpolation() to changes file fix: workarround static initialization issue (perhaps compiler bug) on opensolaris c/complex build fix: ex40,ex41 errors in src/ts/examples/tutorials/ on bsd with c++/complex Perhaps this code nees a separate section when 'enorm == 0) - as pow(0,-0.33) = inf. manual: fix format more changes.. PCGASM/MatGetSubMatricesMPI() changes in dev.html. changes: more updates Add size checks for static arrays of assumed max size [-Warray-bounds] Doc: Update to Changes configure: default to useThreads= 0as the useThreads=1 code currently prints output in jumbled order [producing hard to read configure.log] Delete PETSc viewer attribute if none are left on the linked list instead of putting an empty attribute MatGetSubMatricesMPI_MPIAIJ(): guard for an empty B-matrix when delogging memory in MatSetSeqMats(). PCBDDC: fix typos in the specification of MPI operation MPIU_SUM was used with MPIU_INT when it should only be used with MPIU_REAL or MPIU_SCALAR fixed bad PetscPrintf() formatting in two examples Plex: In pointwise callbacks, use embedding dimension updates for generating Apple installations due to changes in locations of include files configure: do not fail when checking MPICH version [similar to 2cadc8fc42fbad3c229d43b955581b8d29e02ad6 ] ... List of files: /petsc/systems/Apple/OSX/bin/makeframework Wed, 10 Jun 2015 13:22:30 +0000 Matthew G. Knepley <knepley@gmail.com> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#6ce549b9737625953dff5bd940a5071e58d5199c Merge branch 'master' of bitbucket.org:petsc/petsc List of files: /petsc/systems/Apple/OSX/bin/makeframework Tue, 09 Jun 2015 14:29:51 +0000 Hong Zhang <hzhang@mcs.anl.gov> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#3759644b1e4bb363da9cb6f177a169e3daf7e96b Merge branch 'barry/fix-apple-install' List of files: /petsc/systems/Apple/OSX/bin/makeframework Sat, 06 Jun 2015 03:53:37 +0000 Barry Smith <bsmith@mcs.anl.gov> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#e6e75211d226c622f451867f53ce5d558649ff4f updates for generating Apple installations due to changes in locations of include files List of files: /petsc/systems/Apple/OSX/bin/makeframework Sat, 06 Jun 2015 03:52:40 +0000 Barry Smith <bsmith@mcs.anl.gov> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#e1b06f76ad35ce2a89fc667d1feb3b2de35f6e0a Merge branch 'master' into knepley/solkx* master: (6933 commits) Bib: Added reference Includegraph: Updated for compatibility with new folder layout. Add SNESLineSearchReason to fortran includes Also truncate names to fit 32 char fortran limit fix compile warnings /usr/home/balay/petsc.clone-2/src/vec/vec/interface/vector.c:1944: warning: division by zero in '1.0e+0 / 0.' /usr/home/balay/petsc.clone-2/src/ksp/ksp/interface/itfunc.c:508: warning: 'vec_rhs' may be used uninitialized in this function updated output for new trust region initial size initial size of the trust region is set as a percent of the norm of the initial guess, it should not be related to the initial norm of the function (which is kind of nuts). The default bounds for SNESVISetVariableBounds() in the manual page were reversed from correct values Bib: Added refs Bib: Update MPICH webpage Plex: Forgot to close file removed nonexistent ex46f from makefile test rule Revert "fixed bad merge into master" fixed bad merge into master fix memory leak in mkl_pardiso fix some formatting in mkl_pardiso code mv runex111 from TESTEXAMPLES_C to TESTEXAMPLES_DATAFILESPATH Mat+Doc: More Fortran docs Plex ex3: Run tests with the correct number of field components Bib: Added TetGen cite parmetis: make sure 'ldd libparmetis.so' points to the correct libmetis.so that its linked with. small fix as reported by the nightly test ...Conflicts: config/builder.py List of files: /petsc/systems/Apple/OSX/bin/makeframework Wed, 20 May 2015 13:47:27 +0000 Matthew G. Knepley <knepley@gmail.com> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#5a4ab5aba6d7ba6bb46f95414304dbd9bb09f678 Merge branch 'master' into tisaac/dmforestIf we're going to start developing on this again, the recent changes to thelocation of configuration files will make it annoying to switch to and fromthis branch. Matt's and my fixes in DMPlex will also be relevant.* master: (1557 commits) MatLoad_MPIDense() always allocated array space even if it was previously provided Clarified lumping options for PCFieldSplitSchurPreType SELFP. fixed up PetscInfo in GAMG TSErrorWeightedNorm[2|Infinity]: API changes MatLoad_SeqDense() always allocated new space for the data even if the user already provided it Fixed DMCompositeGetAccessArray() to support readonly vectors Fix obviously-wrong aspects of documentation on SNESVINEWTONRSLS and SNESVINEWTONSSLS. fixed example to compile - demonstrates a bug var name 'len' was F90 key word For user provided Jacobian functions they should always assembly into the second matrix, the one from which the preconditioner is built because the first may be used as matrix-free with -snes_mf_operator Suggest --with-64-bit-indices if users mistakenly use --with-64bit-indices Fix configure logging of integer size. missing underscore in #define of vecgetarrayread translation of fortran stub for VECGETARRAYREAD updated test output files to reflect differences introduced previously in PCView output -ksp_type preonly does not support -ksp_monitor_short so remove from test line to prevent extranious warning output missing CHKERRQ; and ugly double declaration of ierr Plex ex3: For want of a semicolon, the kingdom was lost MatSetValuesMPISBAIJ will now print correct global indices when error generated due to new nonzero location completed basic use of MatSetValuesBlocked_SeqBAIJ_Inlined() by MatSetValuesBlocked_MPIBAIJ() to allow proper global indices being printed when error generated by new nonzero locations. Added inline version of MatSetValuesBlocked_SeqBAIJ() to be used by MatSetValuesBlocked_MPIBAIJ() to print error message for nonzero block with global indices ... List of files: /petsc/systems/Apple/OSX/bin/makeframework Thu, 02 Apr 2015 14:12:37 +0000 Toby Isaac <tisaac@ices.utexas.edu> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#898446f941de989eb59a155860a54be7cc14d054 Merge branch 'master' into shri/ts-is-for-differential-variablesConflicts: include/petsc-private/tsimpl.h src/ts/impls/eimex/eimex.c src/ts/interface/ts.c List of files: /petsc/systems/Apple/OSX/bin/makeframework Wed, 11 Mar 2015 04:17:30 +0000 Shri Abhyankar <abhyshr@mcs.anl.gov> http://opengrok.phasta.colorado.edu:8080/source/history/petsc/systems/Apple/OSX/bin/makeframework#f2dee214e9786e57c32a0a7e0b16d5e8ff4abb42 Merge branch 'master' into jed/chemNote merging a branch with good stuff in it for a year and a half is insane!Conflicts: src/ts/examples/tutorials/makefile src/ts/interface/ts.c List of files: /petsc/systems/Apple/OSX/bin/makeframework Fri, 06 Mar 2015 00:10:44 +0000 Barry Smith <bsmith@mcs.anl.gov>